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Epigenomes, Volume 5, Issue 2

June 2021 - 9 articles

Cover Story: Determining DNA methylation is one of the important goals of epigenetics. Another crucial aim is combining bisulfite treatment of associate genetics and epigenetics with phenotypic traits. This has now become possible with genome-wide association studies (GWAS) and epigenome-wide association studies (EWAS). The EpiDiverse EWAS pipeline was implemented based on the GEM R package, including graphical outputs, novel missing data imputation, compatibility with new input types, and was tested on Picea abies (Norway spruce) and Quercus lobata (valley oak) data sets. View this paper
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Articles (9)

  • Review
  • Open Access
21 Citations
29,149 Views
19 Pages

H3K4 Methylation in Aging and Metabolism

  • Chia-Ling Hsu,
  • Yi-Chen Lo and
  • Cheng-Fu Kao

During the process of aging, extensive epigenetic alterations are made in response to both exogenous and endogenous stimuli. Here, we summarize the current state of knowledge regarding one such alteration, H3K4 methylation (H3K4me), as it relates to...

  • Review
  • Open Access
15 Citations
6,384 Views
20 Pages

During the last years, epigenetic processes have emerged as important factors for many neurodegenerative diseases, such as Alzheimer’s disease (AD). These complex diseases seem to have a heritable component; however, genome-wide association studies f...

  • Review
  • Open Access
19 Citations
11,866 Views
14 Pages

Gestational diabetes mellitus (GDM) is a pregnancy complication first detected in the second or third trimester in women that did not show evident glucose intolerance or diabetes before gestation. In 2019, the International Diabetes Federation report...

  • Article
  • Open Access
12 Citations
8,666 Views
20 Pages

The EpiDiverse Plant Epigenome-Wide Association Studies (EWAS) Pipeline

  • Sultan Nilay Can,
  • Adam Nunn,
  • Dario Galanti,
  • David Langenberger,
  • Claude Becker,
  • Katharina Volmer,
  • Katrin Heer,
  • Lars Opgenoorth,
  • Noe Fernandez-Pozo and
  • Stefan A. Rensing

Bisulfite sequencing is a widely used technique for determining DNA methylation and its relationship with epigenetics, genetics, and environmental parameters. Various techniques were implemented for epigenome-wide association studies (EWAS) to reveal...

  • Article
  • Open Access
15 Citations
6,557 Views
23 Pages

Early-Life Exposure to Environmental Contaminants Perturbs the Sperm Epigenome and Induces Negative Pregnancy Outcomes for Three Generations via the Paternal Lineage

  • Clotilde Maurice,
  • Mathieu Dalvai,
  • Romain Lambrot,
  • Astrid Deschênes,
  • Marie-Pier Scott-Boyer,
  • Serge McGraw,
  • Donovan Chan,
  • Nancy Côté,
  • Ayelet Ziv-Gal and
  • Jodi A. Flaws
  • + 4 authors

Due to the grasshopper effect, the Arctic food chain in Canada is contaminated with persistent organic pollutants (POPs) of industrial origin, including polychlorinated biphenyls and organochlorine pesticides. Exposure to POPs may be a contributor to...

  • Article
  • Open Access
14 Citations
6,350 Views
17 Pages

Chronic pain is a highly prevalent and costly issue that often emerges during childhood or adolescence and persists into adulthood. Adverse childhood experiences (ACEs) increase risk for several adverse health conditions, including chronic pain. Rece...

  • Review
  • Open Access
13 Citations
5,548 Views
11 Pages

Pancreatic adenocarcinoma has a horrible prognosis, which is partly due to difficulties in diagnosing the disease in an early stage. Additional blood-born biomarkers for pancreatic adenocarcinoma are needed. Epigenetic modifications, as changes in DN...

  • Communication
  • Open Access
4 Citations
4,718 Views
6 Pages

Epigenetic gene silencing by DNA methylation and histone methylation by EZH2 play an important role in the development of acute myeloid leukemia (AML). EZH2 catalyzes the trimethylation of histone H3-lysine 27-trimethylated (H3K27me3). These epigenet...

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Epigenomes - ISSN 2075-4655