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Genes, Volume 8, Issue 6

2017 June - 23 articles

Cover Story: MYC is a key regulator of cell type progression, apoptosis and cellular transformation; however, it is also an oncogene whose unchecked overexpression leads to genomic instability, one of the hallmarks of cancer. Genotoxic chemotherapeutic drugs kill cancer cells by inducing double strand breaks and cell death. Paradoxically, oncogenic MYC induces chemoresistance by sensitizing the cellular DNA-repair machinery, implying an antagonistic role of MYC in genomic instability. View the paper
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Articles (23)

  • Review
  • Open Access
19 Citations
7,074 Views
14 Pages

21 June 2017

Genetic studies have identified 61 variants associated with the risk of developing Type 1 Diabetes (T1D). The functions of most of the non-HLA (Human Leukocyte Antigen) genetic variants remain unknown. We found that only 16 of these risk variants cou...

  • Article
  • Open Access
19 Citations
8,081 Views
8 Pages

Identifying Bird Remains Using Ancient DNA Barcoding

  • Love Dalén,
  • Vendela K. Lagerholm,
  • Johan A. A. Nylander,
  • Nick Barton,
  • Zbigniew M. Bochenski,
  • Teresa Tomek,
  • David Rudling,
  • Per G. P. Ericson,
  • Martin Irestedt and
  • John R. Stewart

21 June 2017

Bird remains that are difficult to identify taxonomically using morphological methods, are common in the palaeontological record. Other types of challenging avian material include artefacts and food items from endangered taxa, as well as remains from...

  • Article
  • Open Access
20 Citations
6,038 Views
15 Pages

21 June 2017

Plastome-genome incompatibility (PGI) is prevalent in several plants including the Zantedeschia species, a worldwide commercial flower crop native to South Africa. Generally, hybrids suffering from PGI appear less vigorous and more susceptible than n...

  • Article
  • Open Access
6 Citations
6,101 Views
7 Pages

Endogenous Retroviral Insertions Indicate a Secondary Introduction of Domestic Sheep Lineages to the Caucasus and Central Asia between the Bronze and Iron Age

  • Oskar Schroeder,
  • Norbert Benecke,
  • Kai Frölich,
  • Zuogang Peng,
  • Kai Kaniuth,
  • Leonid Sverchkov,
  • Sabine Reinhold,
  • Andrey Belinskiy and
  • Arne Ludwig

20 June 2017

Sheep were one of the first livestock species domesticated by humans. After initial domestication in the Middle East they were spread across Eurasia. The modern distribution of endogenous Jaagsiekte sheep retrovirus insertions in domestic sheep breed...

  • Article
  • Open Access
4,578 Views
12 Pages

20 June 2017

African trypanosomiasis occurs in 36 countries in sub-Saharan Africa with 10,000 reported cases annually. No definitive remedy is currently available and if left untreated, the disease becomes fatal. Structural and biochemical studies of trypanosomal...

  • Communication
  • Open Access
20 Citations
7,146 Views
8 Pages

Using Small RNA-seq Data to Detect siRNA Duplexes Induced by Plant Viruses

  • Xiaoran Niu,
  • Yu Sun,
  • Ze Chen,
  • Rugang Li,
  • Chellappan Padmanabhan,
  • Jishou Ruan,
  • Jan F. Kreuze,
  • KaiShu Ling,
  • ZhangJun Fei and
  • Shan Gao

16 June 2017

Small interfering RNA (siRNA) duplexes are short (usually 21 to 24 bp) double-stranded RNAs (dsRNAs) with several overhanging nucleotides at both 5′- and 3′-ends. It has been found that siRNA duplexes bind the RNA-induced silencing complex (RISC) and...

  • Article
  • Open Access
18 Citations
5,167 Views
13 Pages

Comparative Analysis of Genome Wide DNA Methylation Profiles for the Genic Male Sterile Cabbage Line 01-20S and Its Maintainer Line

  • Fengqing Han,
  • Xiaoli Zhang,
  • Xing Liu,
  • Henan Su,
  • Congcong Kong,
  • Zhiyuan Fang,
  • Limei Yang,
  • Mu Zhuang,
  • Yangyong Zhang and
  • Honghao Lv
  • + 2 authors

16 June 2017

Methylation modifications play an important role in multiple biological processes. Several studies have reported altered methylation patterns in male sterile plants such as rice and wheat, but little is known about the global methylation profiles and...

  • Article
  • Open Access
12 Citations
19,655 Views
12 Pages

An ‛Aukward’ Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks

  • Jessica E. Thomas,
  • Gary R. Carvalho,
  • James Haile,
  • Michael D. Martin,
  • Jose A. Samaniego Castruita,
  • Jonas Niemann,
  • Mikkel-Holger S. Sinding,
  • Marcela Sandoval-Velasco,
  • Nicolas J. Rawlence and
  • Michael Knapp
  • + 5 authors

15 June 2017

One hundred and seventy-three years ago, the last two Great Auks, Pinguinus impennis, ever reliably seen were killed. Their internal organs can be found in the collections of the Natural History Museum of Denmark, but the location of their skins has...

  • Article
  • Open Access
13 Citations
5,243 Views
10 Pages

12 June 2017

Adiponectin plays an important role in energy homeostasis and metabolism in mammalian adipose tissue. In this study, the relationship between adiponectin gene (ADIPOQ) haplotypes and variation in growth and carcass traits in New Zealand (NZ) Romney l...

  • Review
  • Open Access
20 Citations
6,899 Views
10 Pages

Splice-Switching Therapy for Spinal Muscular Atrophy

  • Katharina E. Meijboom,
  • Matthew J.A. Wood and
  • Graham McClorey

12 June 2017

Spinal muscular atrophy (SMA) is a genetic disorder with severity ranging from premature death in infants to restricted motor function in adult life. Despite the genetic cause of this disease being known for over twenty years, only recently has a the...

  • Review
  • Open Access
43 Citations
10,145 Views
14 Pages

The Dual Roles of MYC in Genomic Instability and Cancer Chemoresistance

  • Alpana Kumari,
  • Watson P. Folk and
  • Daitoku Sakamuro

7 June 2017

Cancer is associated with genomic instability and aging. Genomic instability stimulates tumorigenesis, whereas deregulation of oncogenes accelerates DNA replication and increases genomic instability. It is therefore reasonable to assume a positive fe...

  • Article
  • Open Access
46 Citations
7,015 Views
18 Pages

6 June 2017

MicroRNAs (miRNAs) are a class of endogenous small noncoding RNAs which regulate diverse molecular and biochemical processes at a post-transcriptional level in plants. As the ancestor of domesticated wheat, wild emmer wheat (Triticum turgidum ssp. di...

  • Article
  • Open Access
17 Citations
9,174 Views
17 Pages

Fine Mapping and Transcriptome Analysis Reveal Candidate Genes Associated with Hybrid Lethality in Cabbage (Brassica Oleracea)

  • Zhiliang Xiao,
  • Yang Hu,
  • Xiaoli Zhang,
  • Yuqian Xue,
  • Zhiyuan Fang,
  • Limei Yang,
  • Yangyong Zhang,
  • Yumei Liu,
  • Zhansheng Li and
  • Mu Zhuang
  • + 3 authors

5 June 2017

Hybrid lethality is a deleterious phenotype that is vital to species evolution. We previously reported hybrid lethality in cabbage (Brassica oleracea) and performed preliminary mapping of related genes. In the present study, the fine mapping of hybri...

  • Review
  • Open Access
75 Citations
14,152 Views
21 Pages

Ataxin-2: From RNA Control to Human Health and Disease

  • Lauren A. Ostrowski,
  • Amanda C. Hall and
  • Karim Mekhail

5 June 2017

RNA-binding proteins play fundamental roles in the regulation of molecular processes critical to cellular and organismal homeostasis. Recent studies have identified the RNA-binding protein Ataxin-2 as a genetic determinant or risk factor for various...

  • Review
  • Open Access
39 Citations
7,355 Views
19 Pages

3 June 2017

Recently, non-clonal chromosomal alterations previously unappreciated are being proposed to be included in cytogenetic practice. The aim of this inclusion is to obtain a greater understanding of chromosomal instability (CIN) and tumor heterogeneity a...

  • Article
  • Open Access
27 Citations
6,346 Views
19 Pages

31 May 2017

Detecting single nucleotide polymorphisms’ (SNPs) interaction is one of the most popular approaches for explaining the missing heritability of common complex diseases in genome-wide association studies. Many methods have been proposed for SNP interac...

  • Article
  • Open Access
78 Citations
9,275 Views
18 Pages

DNA Methylation Profiling of Human Prefrontal Cortex Neurons in Heroin Users Shows Significant Difference between Genomic Contexts of Hyper- and Hypomethylation and a Younger Epigenetic Age

  • Alexey Kozlenkov,
  • Andrew E. Jaffe,
  • Alisa Timashpolsky,
  • Pasha Apontes,
  • Sergei Rudchenko,
  • Mihaela Barbu,
  • William Byne,
  • Yasmin L. Hurd,
  • Steve Horvath and
  • Stella Dracheva

30 May 2017

We employed Illumina 450 K Infinium microarrays to profile DNA methylation (DNAm) in neuronal nuclei separated by fluorescence-activated sorting from the postmortem orbitofrontal cortex (OFC) of heroin users who died from heroin overdose (N = 37), su...

  • Review
  • Open Access
304 Citations
19,084 Views
30 Pages

MYC Deregulation in Primary Human Cancers

  • Manpreet Kalkat,
  • Jason De Melo,
  • Katherine Ashley Hickman,
  • Corey Lourenco,
  • Cornelia Redel,
  • Diana Resetca,
  • Aaliya Tamachi,
  • William B. Tu and
  • Linda Z. Penn

25 May 2017

MYC regulates a complex biological program by transcriptionally activating and repressing its numerous target genes. As such, MYC is a master regulator of many processes, including cell cycle entry, ribosome biogenesis, and metabolism. In cancer, the...

  • Review
  • Open Access
127 Citations
22,286 Views
25 Pages

Maternal Factors that Induce Epigenetic Changes Contribute to Neurological Disorders in Offspring

  • Avijit Banik,
  • Deepika Kandilya,
  • Seshadri Ramya,
  • Walter Stünkel,
  • Yap Seng Chong and
  • S. Thameem Dheen

24 May 2017

It is well established that the regulation of epigenetic factors, including chromatic reorganization, histone modifications, DNA methylation, and miRNA regulation, is critical for the normal development and functioning of the human brain. There are a...

  • Article
  • Open Access
51 Citations
10,309 Views
15 Pages

Reticulate Evolution of the Rock Lizards: Meiotic Chromosome Dynamics and Spermatogenesis in Diploid and Triploid Males of the Genus Darevskia

  • Victor Spangenberg,
  • Marine Arakelyan,
  • Eduard Galoyan,
  • Sergey Matveevsky,
  • Ruzanna Petrosyan,
  • Yuri Bogdanov,
  • Felix Danielyan and
  • Oxana Kolomiets

24 May 2017

Knowing whether triploid hybrids resulting from natural hybridization of parthenogenetic and bisexual species are fertile is crucial for understanding the mechanisms of reticulate evolution in rock lizards. Here, using males of the bisexual diploid r...

  • Review
  • Open Access
332 Citations
29,903 Views
20 Pages

CpG and Non-CpG Methylation in Epigenetic Gene Regulation and Brain Function

  • Hyun Sik Jang,
  • Woo Jung Shin,
  • Jeong Eon Lee and
  • Jeong Tae Do

23 May 2017

DNA methylation is a major epigenetic mark with important roles in genetic regulation. Methylated cytosines are found primarily at CpG dinucleotides, but are also found at non-CpG sites (CpA, CpT, and CpC). The general functions of CpG and non-CpG me...

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Genes - ISSN 2073-4425