Myodes rufocanus Cataract Identification and Transcriptome Analysis
Abstract
1. Introduction
2. Materials and Methods
- Experimental animals
- Experimental grouping, sample collection and processing
- Slit lamp observation
- Blood physiological and biochemical testing
- Pathological histological analysis
- Transcriptome analysis
- Quantitative fluorescence analysis of the expression of cataract-related genes in the eyeball
3. Results
3.1. Lens Changes in M. rufocanus Under Natural Light and Slit Lamp
3.2. Physiological and Biochemical Testing of M. rufocanus Blood
3.3. M. rufocanus Histopathological Changes
3.4. Transcriptome Results Analysis of the Brown-Backed Mouse Eye
3.5. Expression of Cataract Disease-Causing Genes in the Brown-Backed Mouse Lens
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Ang, M.J.; Afshari, N.A. Cataract and systemic disease: A review. Clin. Exp. Ophthalmol. 2021, 49, 118–127. [Google Scholar] [CrossRef] [PubMed]
- Wang, D.; Tang, T.; Li, P.; Zhao, J.; Shen, B.; Zhang, M. The global burden of cataracts and its attributable risk factors in 204 countries and territories: A systematic analysis of the global burden of disease study. Front. Public Health 2024, 12, 1366677. [Google Scholar] [CrossRef] [PubMed]
- Wu, T.-H.; Liu, W.-M.; Li, J.-Q.; Song, Z.-Y.; Lu, P.-R. Time trends and gender disparities of Chinese cataract burden and their predictions. Int. J. Ophthalmol. 2023, 16, 1527–1534. [Google Scholar] [CrossRef]
- Oda, S.; Kabeya, H.; Sato, S.; Shimonagane, A.; Inoue, K.; Hayashidani, H.; Takada, N.; Fujita, H.; Kawabata, H.; Maruyama, S. Isolation of Pathogenic Yersinia enterocolitica 1B/O:8 from Apodemus Mice in Japan. J. Wildl. Dis. 2014, 51, 260–264. [Google Scholar] [CrossRef]
- Iwasa, M.A.; Nakata, K. A Note on the Genetic Status of the Dark Red-Backed Vole, Myodes rex, in Hokkaido, Japan. Mammal Study 2011, 36, 99–103. [Google Scholar] [CrossRef]
- Kusumoto, K. Humoral Immune Response of Overwintered Gray Red-Backed Voles (Myodes rufocanus bedfordiae) under Cold Stress in Spring. Bull. Fac. Agric. Saga Univ. 2015, 100, 15–26. [Google Scholar]
- Soininen, E.M.; Valentini, A.; Coissac, E.; Miquel, C.; Gielly, L.; Brochmann, C.; Brysting, A.K.; Sønstebø, J.H.; Ims, R.A.; Yoccoz, N.G.; et al. Analysing diet of small herbivores: The efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures. Front. Zool. 2009, 6, 16. [Google Scholar] [CrossRef]
- Suzuki, T.; Obara, Y.; Tsuchiya, K.; Oshida, T.; Iwasa, M.A. Ag-NORs Analysis in Three Species of Red-Backed Voles, with a Consideration of Generic Allocation of Anderson’s Red-Backed Vole. Mammal Study 2014, 39, 91–97. [Google Scholar]
- Graw, J. Congenital hereditary cataracts. Int. J. Dev. Biol. 2004, 48, 1031–1044. [Google Scholar] [CrossRef]
- Ma, C.; Zheng, G.; Hao, L. Analysis of disease-causing gene mutation in three Chinese families with congenital inherited cataract. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 2018, 35, 165–168. [Google Scholar]
- Wang, X.; Wang, D.; Shan, Z. Clinical and genetic analysis of a family diagnosed with familial hypobetalipoproteinemia in which the proband was diagnosed with diabetes mellitus. Atherosclerosis 2015, 239, 552–556. [Google Scholar] [CrossRef] [PubMed]
- Aymoz, D.; Solé, C.; Pierre, J.; Schmitt, M.; de Nadal, E.; Posas, F.; Pelet, S. Timing of gene expression in a cell-fate decision system. Mol. Syst. Biol. 2018, 14, e8024. [Google Scholar] [CrossRef] [PubMed]
- Yoo, M.; Shin, J.; Kim, J.; Ryall, K.A.; Lee, K.; Lee, S.; Jeon, M.; Kang, J.; Tan, A.C. DSigDB: Drug signatures database for gene set analysis. Bioinformatics 2015, 31, 3069–3071. [Google Scholar] [CrossRef] [PubMed]
- Ferraz, A.L.; Ojeda, A.; López-Béjar, M.; Fernandes, L.T.; Castelló, A.; Folch, J.M.; Pérez-Enciso, M. Transcriptome architecture across tissues in the pig. BMC Genom. 2008, 9, 173. [Google Scholar] [CrossRef]
- Söllner, J.F.; Leparc, G.; Hildebrandt, T.; Klein, H.; Thomas, L.; Stupka, E.; Simon, E. An RNA-Seq atlas of gene expression in mouse and rat normal tissues. Sci. Data 2017, 4, 170185. [Google Scholar] [CrossRef]
- Gluck, C.; Min, S.; Oyelakin, A.; Smalley, K.; Sinha, S.; Romano, R.-A. RNA-seq based transcriptomic map reveals new insights into mouse salivary gland development and maturation. BMC Genom. 2016, 17, 923. [Google Scholar] [CrossRef]
- Zhou, G.; Zhou, N.; Hu, S.; Zhao, L.; Zhang, C.; Qi, Y. A missense mutation in CRYBA4 associated with congenital cataract and microcornea. Mol. Vis. 2010, 16, 1019–1024. [Google Scholar]
- Jiao, X.; Kabir, F.; Irum, B.; Khan, A.O.; Wang, Q.; Li, D.; Khan, A.A.; Husnain, T.; Akram, J.; Riazuddin, S.; et al. A Common Ancestral Mutation in CRYBB3 Identified in Multiple Consanguineous Families with Congenital Cataracts. PLoS ONE 2016, 11, e0157005. [Google Scholar] [CrossRef]
- Zhang, L.F.; Qin, Z.W.; Lu, B.; Lyu, D.N.; Li, J.Y.; Yan, C.X.; Song, F.; Tang, Q.M.; Yin, H.F.; Fu, Q.L. Transcriptome profiling of differentiated lenses through RNA sequencing. Zhonghua Yan Ke Za Zhi 2020, 56, 356–363. [Google Scholar]
- Guo, R.; Huang, D.; Ji, J.; Liu, W. A novel mutation GJA8 NM_005267.5: C.124G > A, p.(E42K) causing congenital nuclear cataract. BMC Ophthalmol. 2022, 22, 172. [Google Scholar] [CrossRef]
- Hassan, A.Y.; Yousaf, S.; Levin, M.R.; Saeedi, O.J.; Riazuddin, S.; Alexander, J.L.; Ahmed, Z.M. Novel Homozygous Missense Variant in GJA3 Connexin Domain Causing Congenital Nuclear and Cortical Cataracts. Int. J. Mol. Sci. 2021, 23, 240. [Google Scholar] [CrossRef]
- Anand, D.; Agrawal, S.A.; Slavotinek, A.; Lachke, S.A. Mutation update of transcription factor genes FOXE3, HSF4, MAF, and PITX3 causing cataracts and other developmental ocular defects. Hum. Mutat. 2018, 39, 471–494. [Google Scholar] [CrossRef]
- Rajaram, N.; Kerppola, T.K. Synergistic transcription activation by Maf and Sox and their subnuclear localization are disrupted by a mutation in Maf that causes cataract. Mol. Cell. Biol. 2004, 24, 5694–5709. [Google Scholar] [CrossRef] [PubMed]
- Tang, Y.; Song, H.; Chen, J.; Tang, X. Comparison of pseudophakic retinal straylight in spherical/aspherical and hydrophobic/hydrophilic intraocular lens. Int. J. Ophthalmol. 2015, 8, 1146–1150. [Google Scholar] [PubMed]
- Yuan, C.; Han, T.; Su, P.; Liu, M.; Zhou, X.; Zhang, D.; Jia, W.; Wang, A.; Yue, M.; Xiang, Z.; et al. A novel MIP mutation in a Chinese family with congenital cataract. Ophthalmic Genet. 2018, 39, 473–476. [Google Scholar] [CrossRef] [PubMed]
- Si, N.; Song, Z.; Meng, X.; Li, X.; Xiao, W.; Zhang, X. A novel MAF missense mutation leads to congenital nuclear cataract by impacting the transactivation of crystallin and noncrystallin genes. Gene 2019, 692, 113–118. [Google Scholar] [CrossRef]







| Normal Group | Cataract Group | |
|---|---|---|
| WBC (109/L) | 1.82 ± 0.13 | 1.09 ± 0.02 |
| Neu # (109/L) | 0.18 ± 0.06 | 0.18 ± 0.03 |
| Lym # (109/L) | 1.46 ± 0.19 | 0.78 ± 0.08 |
| Mon # (109/L) | 0.12 ± 0.05 | 0.1 ± 0.04 |
| Eos # (109/L) | 0.06 ± 0.01 | 0.03 ± 0.03 |
| Bas # (109/L) | 0 ± 0.00 | 0 ± 0 |
| Neu % (%) | 9.7 ± 3.41 | 5.9 ± 2.78 |
| Lym % (%) | 79.9 ± 5.70 | 70.9 ± 7.97 |
| Mon % (%) | 6.87 ± 3.10 | 9.63 ± 4.01 |
| Eos % (%) | 3.33 ± 0.67 | 3.5 ± 3.00 |
| Bas % (%) | 0.2 ± 0.35 | 0.07 ± 0.12 |
| RBC (1012/L) | 9.66 ± 1.21 | 9.21 ± 1.64 |
| HGB (g/L) | 153 ± 17.58 | 147 ± 35.00 |
| HCT (%) | 39.23 ± 5.04 | 39.47 ± 7.82 |
| MCV (fL) | 40.63 ± 1.94 | 42.8 ± 1.18 |
| MCH (pg) | 15.83 ± 0.21 | 15.83 ± 0.87 |
| MCHC (g/L) | 390.67 ± 22.05 | 370 ± 18.73 |
| RDW-CV (%) | 12.9 ± 0.79 | 14.23 ± 0.75 |
| RDW-SD (fL) | 22.7 ± 2.69 | 26.57 ± 0.32 |
| PLT (109/L) | 409 ± 76.21 | 447.67 ± 122.32 |
| MPV (fL) | 4.9 ± 0.75 | 4.8 ± 0.61 |
| PDW (%) | 15.77 ± 0.21 | 15.5 ± 0.35 |
| PCT (%) | 0.2 ± 0.05 | 0.22 ± 0.08 |
| Normal Group | Cataract Group | |
|---|---|---|
| ALT | 116.47 ± 2.79 | 111.40 ± 9.62 |
| AST | 326.17 ± 36.00 | 326.7 ± 16.87 |
| ALB | 42.8 ± 2.08 | 42.07 ± 6.57 |
| UREA | 6.22 ± 0.22 | 7.72 ± 1.15 |
| CREA-S | 26.47 ± 7.30 | 24.83 ± 1.93 |
| GLU-G | 3.17 ± 0.51 | 3.17 ± 0.51 |
| TP2 | 61.3 ± 1.74 | 59.00 ± 8.42 |
| TC | 2.5 ± 0.46 | 2.15 ± 0.47 |
| TG | 0.73 ± 0.20 | 0.55 ± 0.21 |
| Gene | Gene id | MeanTPM (T) | MeanTPM (C) | log2FoldChange | p Value | q Value | Result |
|---|---|---|---|---|---|---|---|
| CRYBA4 | TRINITY_DN1059_83_c0_g1 | 4.831032667 | 10.9069265 | −1.174841104 | 6.24159 × 10−7 | 6.93998 × 10−5 | down |
| CRYBB2 | TRINITY_DN12097 | 0.661233833 | 3.832961667 | −2.53522712 | 9.43316 × 10−8 | 1.38287 × 10−5 | down |
| CRYBB3 | TRINITY_DN11253 | 7.652753667 | 28.19613833 | −1.881446722 | 0.000155279 | 0.006090819 | down |
| TRINITY_DN11340 | 299.0457839 | 1003.509257 | −1.746615643 | 3.70015 × 10−5 | 0.002024292 | down | |
| CRYGS | TRINITY_DN11253 | 744.6663483 | 3103.17669 | −2.059079776 | 0.002696894 | 0.048259947 | down |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Wang, M.; Zhou, Q.; Han, S.; Geng, Y.; Yu, X.; Quan, F. Myodes rufocanus Cataract Identification and Transcriptome Analysis. Genes 2026, 17, 495. https://doi.org/10.3390/genes17050495
Wang M, Zhou Q, Han S, Geng Y, Yu X, Quan F. Myodes rufocanus Cataract Identification and Transcriptome Analysis. Genes. 2026; 17(5):495. https://doi.org/10.3390/genes17050495
Chicago/Turabian StyleWang, Mingzhe, Qiuyun Zhou, Shengnan Han, Yulu Geng, Xianfeng Yu, and Fushi Quan. 2026. "Myodes rufocanus Cataract Identification and Transcriptome Analysis" Genes 17, no. 5: 495. https://doi.org/10.3390/genes17050495
APA StyleWang, M., Zhou, Q., Han, S., Geng, Y., Yu, X., & Quan, F. (2026). Myodes rufocanus Cataract Identification and Transcriptome Analysis. Genes, 17(5), 495. https://doi.org/10.3390/genes17050495

