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Genes, Volume 15, Issue 12

2024 December - 164 articles

Cover Story: Persistent or recurrent green urine is extraordinarily rare in mammals and signifies biliverdinuria. This study characterizes the clinical and metabolic phenotypes of two dogs with life-long green urine and reports the discovery of large exonic deletions in the biliverdin reductase A gene, BLVRA. These are the first confirmed cases of biliverdinuria caused by BLVRA defects in non-human mammals. The data contribute greatly to our understanding of an extremely rare inborn error of metabolism in heme catabolism and might help with the recognition, diagnosis, and management of future cases of hereditary biliverdinuria across species. View this paper
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Articles (164)

  • Article
  • Open Access
2,444 Views
12 Pages

23 December 2024

Background: Sudden infant death syndrome (SIDS) is the leading cause of death among infants aged between one month and one year. Altered enzyme activities or expression of acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) have been observe...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
2 Citations
1,964 Views
17 Pages

Exploring the Role of FICD, a New Potential Gene Involved in Borderline Intellectual Functioning, Psychological and Metabolic Disorders

  • Mirella Vinci,
  • Donatella Greco,
  • Maria Grazia Figura,
  • Simone Treccarichi,
  • Antonino Musumeci,
  • Vittoria Greco,
  • Rossella Pettinato,
  • Angelo Gloria,
  • Carla Papa and
  • Francesco Calì
  • + 2 authors

23 December 2024

Background/Objectives: AMPylation is a post-translational modification involving the transfer of adenosine monophosphate (AMP) from adenosine triphosphate (ATP) to target proteins, serving as a critical regulatory mechanism in cellular functions. Thi...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Review
  • Open Access
2 Citations
4,625 Views
33 Pages

23 December 2024

Research into the biology of plant viruses, their mechanisms of pathogenicity, and the induction of host resistance has laid a solid foundation for the discovery of antiviral agents and their targets and the development of effective control technolog...

(This article belongs to the Section Plant Genetics and Genomics)
  • Feature Paper
  • Review
  • Open Access
6 Citations
5,646 Views
25 Pages

23 December 2024

Background: Neurodevelopmental disorders (NDDs) affect approximately 15% of children and adolescents worldwide. This group of disorders is often polygenic with varying risk factors, with many associated genes converging on shared molecular pathways,...

(This article belongs to the Special Issue The Genetic and Epigenetic Basis of Neurodevelopmental Disorders)
  • Article
  • Open Access
4 Citations
2,367 Views
14 Pages

Genetic Mapping by 55K Single-Nucleotide Polymorphism Array Reveals Candidate Genes for Tillering Trait in Wheat Mutant dmc

  • Kemeng Jiao,
  • Guojun Xia,
  • Yuan Zhou,
  • Chenyu Zhao,
  • Huiyuan Yan,
  • Menglei Qi,
  • Pingfan Xie,
  • Yongjing Ni,
  • Jingxue Zhao and
  • Lei Li
  • + 3 authors

22 December 2024

Background: The tiller number is a key agronomic trait for increasing the yield potential of wheat (Triticum aestivum L.). A number of quantitative trait loci (QTLs) and key genes controlling tillering have been identified, but the regulatory mechani...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
1 Citations
2,271 Views
18 Pages

Complete Genome Assembly of Amycolatopsis bartoniae DSM 45807T Allows the Characterization of a Novel Glycopeptide Biosynthetic Gene Cluster

  • Anastasia Stepanyshyn,
  • Christian Rückert-Reed,
  • Tobias Busche,
  • Bohdan Yaruta,
  • Andres Andreo-Vidal,
  • Flavia Marinelli,
  • Jörn Kalinowski and
  • Oleksandr Yushchuk

22 December 2024

Background: Glycopeptide antibiotics (GPAs) are a very successful class of clinically relevant antibacterials, used to treat severe infections caused by Gram-positive pathogens, e.g., multidrug resistant and methicillin-resistant staphylococci. The b...

(This article belongs to the Section Microbial Genetics and Genomics)
  • Review
  • Open Access
48 Citations
7,310 Views
15 Pages

Federated Learning: Breaking Down Barriers in Global Genomic Research

  • Giulia Calvino,
  • Cristina Peconi,
  • Claudia Strafella,
  • Giulia Trastulli,
  • Domenica Megalizzi,
  • Sarah Andreucci,
  • Raffaella Cascella,
  • Carlo Caltagirone,
  • Stefania Zampatti and
  • Emiliano Giardina

22 December 2024

Recent advancements in Next-Generation Sequencing (NGS) technologies have revolutionized genomic research, presenting unprecedented opportunities for personalized medicine and population genetics. However, issues such as data silos, privacy concerns,...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
2 Citations
2,139 Views
16 Pages

Non-Invasive miRNA Profiling for Differential Diagnosis and Prognostic Stratification of Testicular Germ Cell Tumors

  • Panagiotis J. Vlachostergios,
  • Konstantinos Evmorfopoulos,
  • Ioannis Zachos,
  • Konstantinos Dimitropoulos,
  • Eleni Thodou,
  • Maria Samara,
  • Vassilios Tzortzis and
  • Antonis Giakountis

22 December 2024

Background/Objectives: Testicular germ cell tumors (TGCT) are common in young adult men and have high cure rates. Conventional serum tumor markers and imaging are not able to differentiate between histologic subtypes of the disease, which portend dif...

(This article belongs to the Section Genetic Diagnosis)
  • Article
  • Open Access
2 Citations
3,084 Views
14 Pages

Phenotypic and Genetic Heterogeneity of a Pakistani Cohort of 15 Consanguineous Families Segregating Variants in Leber Congenital Amaurosis-Associated Genes

  • Zainab Akhtar,
  • Sumaira Altaf,
  • Yumei Li,
  • Sana Bibi,
  • Jamal Shah,
  • Kiran Afshan,
  • Meng Wang,
  • Hafiz Muhammad Jafar Hussain,
  • Nadeem Qureshi and
  • Sabika Firasat
  • + 1 author

21 December 2024

Background: Leber congenital amaurosis (LCA) is a congenital onset severe form of inherited retinal dystrophy (IRD) and a common cause of pediatric blindness. Disease-causing variants in at least 14 genes are reported to predispose LCA phenotype. LCA...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1 Citations
1,990 Views
26 Pages

The Arabidopsis thaliana Double-Stranded RNA Binding Proteins DRB1 and DRB2 Are Required for miR160-Mediated Responses to Exogenous Auxin

  • Kim Zimmerman,
  • Joseph L. Pegler,
  • Jackson M. J. Oultram,
  • David A. Collings,
  • Ming-Bo Wang,
  • Christopher P. L. Grof and
  • Andrew L. Eamens

21 December 2024

DOUBLE-STRANDED RNA BINDING (DRB) proteins DRB1, DRB2, and DRB4 are essential for microRNA (miRNA) production in Arabidopsis thaliana (Arabidopsis) with miR160, and its target genes, AUXIN RESPONSE FACTOR10 (ARF10), ARF16, and ARF17, forming an auxin...

(This article belongs to the Special Issue Plant Genetic Diversity and Omics Research)
  • Article
  • Open Access
4 Citations
1,881 Views
12 Pages

New Axes of Interaction in Circ_0079593/miR-516b-5p Network in Melanoma Metastasis Cell Lines

  • Elisa De Tomi,
  • Elisa Orlandi,
  • Francesca Belpinati,
  • Cristina Patuzzo,
  • Elisabetta Trabetti,
  • Macarena Gomez-Lira and
  • Giovanni Malerba

21 December 2024

Background/Objectives: microRNAs (miRNAs) and circular RNA (circRNAs) show a close interconnection in the control of fundamental functions, such as cell proliferation and tumor development. A full understanding of this complex and interconnected netw...

  • Article
  • Open Access
7 Citations
2,940 Views
16 Pages

House Mice in the Atlantic Region: Genetic Signals of Their Human Transport

  • Sofia I. Gabriel,
  • Jonathan J. Hughes,
  • Jeremy S. Herman,
  • John F. Baines,
  • Mabel D. Giménez,
  • Melissa M. Gray,
  • Emilie A. Hardouin,
  • Bret A. Payseur,
  • Peter G. Ryan and
  • Jeremy B. Searle
  • + 3 authors

21 December 2024

Background/Objectives: The colonization history of house mice reflects the maritime history of humans that passively transported them worldwide. We investigated western house mouse colonization in the Atlantic region through studies of mitochondrial...

(This article belongs to the Collection Feature Papers in ‘Animal Genetics and Genomics’)
  • Article
  • Open Access
3 Citations
1,488 Views
13 Pages

Complete Mitochondrial Genomes of Pluvialis fulva and Charadrius dubius with Phylogenetic Analysis of Charadriiformes

  • Kuo Sun,
  • Qingxiong Wang,
  • Kun Bian,
  • Feiran Li,
  • Jie Tang,
  • Lijuan Suo,
  • Xiang Hou and
  • Chao Yang

21 December 2024

Background: Plovers (Charadriidae), within the order of Charadriiformes, a group of modern birds distributed worldwide, are a frequent subject of molecular phylogenetic studies. While research on mitochondrial genome (mitogenome) variation within the...

(This article belongs to the Special Issue Molecular Evolution, Mitochondrial Genomics and Mitochondrial Genome Expression in Animals: 2024–2025)
  • Article
  • Open Access
1 Citations
1,864 Views
22 Pages

Genomic Analysis of Talaromyces verruculosus SJ9: An Efficient Tetracycline-, Enrofloxacin-, and Tylosin-Degrading Fungus

  • Jing Fu,
  • Xiaoqing Wu,
  • Chi Zhang,
  • Yuhan Tang,
  • Fangyuan Zhou,
  • Xinjian Zhang and
  • Susu Fan

21 December 2024

Background/Objectives: Many fungi related to Talaromyces verruculosus can degrade a wide range of pollutants and are widely distributed globally. T. verruculosus SJ9 was enriched from fresh strawberry inter-root soil to yield fungi capable of degradi...

(This article belongs to the Section Microbial Genetics and Genomics)
  • Article
  • Open Access
2 Citations
1,785 Views
17 Pages

Drought Stress Inhibits the Accumulation of Rotenoids and the Biosynthesis of Drought-Responsive Phytohormones in Mirabilis himalaica (Edgew.) Heim Calli

  • Shiyi Zhang,
  • Jiaqi Gao,
  • Xiaozhong Lan,
  • Linfan Zhang,
  • Weipeng Lian,
  • Chenglin Wang,
  • Zhanyun Shen,
  • Xiang Li and
  • Juan Liu

21 December 2024

Background: Mirabilis himalaica, distributed in the high-altitude, arid, and semi-arid regions of Xizang, exhibits great tolerance to drought, which is rich in rotenoids and other secondary metabolites. It is still unknown, though, how drought s...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
1,404 Views
17 Pages

21 December 2024

Background: During the domestication of silkworm, an economic insect, its physiological characteristics have changed greatly. RNA-based gene duplication, known as retrocopy, plays an important role in the formation of new genes and genome evolution,...

(This article belongs to the Special Issue Genomics, Transcriptomics, and Proteomics of Insects)
  • Article
  • Open Access
5 Citations
3,823 Views
9 Pages

Impact of Long-Term Cannabidiol (CBD) Treatment on Mouse Kidney Transcriptome

  • Mikołaj Rokicki,
  • Jakub Żurowski,
  • Sebastian Sawicki,
  • Ewa Ocłoń,
  • Tomasz Szmatoła,
  • Igor Jasielczuk,
  • Karolina Mizera-Szpilka,
  • Ewelina Semik-Gurgul and
  • Artur Gurgul

21 December 2024

Background: Cannabidiol, which is one of the main cannabinoids present in Cannabis sativa plants, has been shown to have therapeutic properties, including anti-inflammatory and antioxidant effects that may be useful for treatment of various kidney co...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
1 Citations
1,472 Views
11 Pages

Relationship of Interleukin 6 with Hepatic Steatosis and Liver Fibrosis in Rheumatoid Arthritis at a Rheumatology Care Center in Cartagena, Colombia

  • Gloria Caterine Pérez-Mingan,
  • Rita Magola Sierra-Merlano,
  • Ismael Yepes,
  • María Judith Palomino Vergara,
  • Miguel Ortiz,
  • Breiner Peña,
  • Eder Cano-Pérez and
  • Doris Gómez-Camargo

21 December 2024

Background/Objectives: This study aimed to investigate the association of IL-6 with steatotic liver disease (SLD) and liver fibrosis (LF) in rheumatoid arthritis (RA) patients at a rheumatology center in Cartagena de Indias, Colombia. Methods: This w...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
4 Citations
1,582 Views
14 Pages

Intraspecific Chloroplast Genome Genetic Polymorphism of Pinellia ternata (Xi Junecry) and Its Revelation of a Single Origin in Phylogeny

  • Wenlong Xing,
  • Weihan Yu,
  • Yuanyuan Kong,
  • Xian Ren,
  • Liuying Zhu,
  • Qingyang Li,
  • Yujie Yang,
  • Yueqin Cheng and
  • Hongwei Wang

20 December 2024

Background: Xi Junecry (Pinellia ternata), a perennial herb of the Araceae family, is indigenous to Xinxian County, Henan Province, China, and is regarded as a premium variety among similar medicinal materials. However, the lack of comprehensive gene...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
25 Citations
3,869 Views
15 Pages

Genome-Wide Association Analysis of Growth Traits in Hu Sheep

  • Tingting Li,
  • Feng Xing,
  • Na Zhang,
  • Jieran Chen,
  • Yuting Zhang,
  • Hengqian Yang,
  • Shiyu Peng,
  • Runlin Ma,
  • Qiuyue Liu and
  • Haitao Wang
  • + 1 author

20 December 2024

(1) Background: The Hu sheep is a renowned breed characterized by high reproduction, year-round estrus, and resistance to high humidity and temperature conditions. However, the breed exhibits lower growth rates and meat yields, which necessitate impr...

(This article belongs to the Special Issue Advances in Cattle, Sheep, and Goats Molecular Genetics and Breeding)
  • Article
  • Open Access
2 Citations
1,553 Views
11 Pages

Novel Intragenic and Genomic Variants Highlight the Phenotypic Variability in HCCS-Related Disease

  • Linda M. Reis,
  • Donald Basel,
  • Pierre Bitoun,
  • David S. Walton,
  • Tom Glaser and
  • Elena V. Semina

20 December 2024

Background: Disruption of HCCS results in microphthalmia with linear skin lesions (MLS) characterized by microphthalmia/anophthalmia, corneal opacity, aplastic skin lesions, variable central nervous system and cardiac anomalies, intellectual disabili...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Feature Paper
  • Article
  • Open Access
1,403 Views
20 Pages

20 December 2024

Background/Objectives: Systems of reproduction differ with respect to the magnitude of neutral genetic diversity maintained in a population. In particular, the partitioning of reproductive organisms into mating types and regular inbreeding have long...

(This article belongs to the Section Population and Evolutionary Genetics and Genomics)
  • Article
  • Open Access
3 Citations
3,459 Views
11 Pages

Expanding the Genotypic and Phenotypic Spectrum of OFD1-Related Conditions: Three More Cases

  • Tatiana Kyian,
  • Artem Borovikov,
  • Inga Anisimova,
  • Oksana Ryzhkova,
  • Maria Bulakh,
  • Elizabeth Bragina,
  • Maria Avakyan,
  • Anna Demchenko,
  • Victoria Zabnenkova and
  • Sergey Kutsev
  • + 3 authors

20 December 2024

Introduction: Pathogenic variants in the OFD1 gene are linked to a spectrum of syndromes that exhibit partial clinical overlap. Hemizygous loss-of-function variants are considered lethal in males, while heterozygous loss-of-function variants generall...

(This article belongs to the Special Issue Genes and Variants in Human Rare Genetic Diseases)
  • Article
  • Open Access
6 Citations
1,880 Views
13 Pages

20 December 2024

Background: Epigenetic dysregulation is a common feature of cancer. Promoter demethylation of tumor-promoting genes and global DNA hypomethylation may trigger tumor progression. Epigenetic changes are unstable; thus, research has focused on detecting...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Review
  • Open Access
5 Citations
2,860 Views
17 Pages

Zonulopathies as Genetic Disorders of the Extracellular Matrix

  • Chimwemwe Chipeta,
  • Jose Aragon-Martin and
  • Aman Chandra

20 December 2024

The zonular fibres are formed primarily of fibrillin-1, a large extracellular matrix (ECM) glycoprotein, and also contain other constituents such as LTBP-2, ADAMTSL6, MFAP-2 and EMILIN-1, amongst others. They are critical for sight, holding the cryst...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Feature Paper
  • Article
  • Open Access
2 Citations
2,511 Views
17 Pages

Dynamic Chromatin Accessibility and Gene Expression Regulation During Maize Leaf Development

  • Yiduo Wang,
  • Shuai Wang,
  • Yufeng Wu,
  • Jiawen Cheng and
  • Haiyan Wang

20 December 2024

Background/Objectives: Chromatin accessibility is closely associated with transcriptional regulation during maize (Zea mays) leaf development. However, its precise role in controlling gene expression at different developmental stages remains poorly u...

(This article belongs to the Section Plant Genetics and Genomics)
  • Review
  • Open Access
12 Citations
8,240 Views
13 Pages

20 December 2024

Background/Objectives: The PPARGC1A gene, encoding the PGC-1α protein, is a critical regulator of energy metabolism, influencing mitochondrial biogenesis, fatty acid oxidation, and carbohydrate metabolism. This narrative review aims to evaluate the r...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
3 Citations
2,517 Views
14 Pages

Polymorphism of Genes Potentially Affecting Growth and Body Size Suggests Genetic Divergence in Wild and Domestic Reindeer (Rangifer tarandus) Populations

  • Anna A. Krutikova,
  • Natalia V. Dementieva,
  • Yuri S. Shcherbakov,
  • Vasiliy V. Goncharov,
  • Darren K. Griffin and
  • Michael N. Romanov

20 December 2024

Background/Objectives: A combination of increased human presence in the Arctic zone alongside climate change has led to a decrease in the number of wild reindeer (Rangifer tarandus). Studying the genetic potential of this species will aid in conserva...

(This article belongs to the Section Population and Evolutionary Genetics and Genomics)
  • Article
  • Open Access
7 Citations
2,060 Views
18 Pages

Comparative Transcriptome Analysis Reveals Mechanisms of Differential Salinity Tolerance Between Suaeda glauca and Suaeda salsa

  • Qidong Yan,
  • Shang Gao,
  • Xianglun Zhang,
  • Guoping Liu,
  • Peitao Chen,
  • Xuanyi Gao,
  • Li Yuan,
  • Yucheng Tian,
  • Dapeng Li and
  • Huan Zhang
  • + 1 author

19 December 2024

Background: Suaeda glauca and Suaeda salsa have obvious morphological features and strongly tolerate saline–alkali environments. However, the mechanisms that lead to the differences in saline–alkali tolerance between them remain unclear. Methods: In...

(This article belongs to the Special Issue Abiotic Stress in Plants: Molecular Genetics and Genomics—2nd Edition)
  • Article
  • Open Access
3 Citations
1,584 Views
11 Pages

Transcriptomic Changes in Human Tonsil-Derived Mesenchymal Stem Cells Across Culture Passages

  • Moon Sik Oh,
  • Heesun Hong,
  • Ok Joo Lee,
  • Su Hyeon Yi,
  • Hae Sang Park,
  • Jae-Jun Lee,
  • Chan Hum Park and
  • Sun-Wha Im

19 December 2024

Background/Objectives: Tonsil-derived mesenchymal stem cells (TMSCs) are in the limelight in regenerative medicine due to their high proliferation and differentiation potential. It is important to conduct studies to determine the optimal conditions f...

(This article belongs to the Section Technologies and Resources for Genetics)
  • Article
  • Open Access
3 Citations
2,988 Views
15 Pages

Association Among MCT1 rs1049434 Polymorphism, Athlete Status, and Physiological Parameters in Japanese Long-Distance Runners

  • Shotaro Seki,
  • Tetsuro Kobayashi,
  • Kenji Beppu,
  • Manabu Nojo,
  • Kosaku Hoshina,
  • Naoki Kikuchi,
  • Takanobu Okamoto,
  • Koichi Nakazato and
  • Inkwan Hwang

19 December 2024

Background/Objectives: Monocarboxylate transporters (MCTs) comprise 14 known isoforms, with MCT1 being particularly important for lactate transport. Variations in lactate metabolism capacity and aerobic performance are associated with the T1470A poly...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
2 Citations
1,574 Views
13 Pages

19 December 2024

Background/Objectives: AML is an aggressive malignant disease characterized by aberrant proliferation and accumulation of immature blast cells in the patient’s bone marrow. Chemotherapeutic treatment can effectively induce remission and re-esta...

(This article belongs to the Special Issue MicroRNA in Cancers)
  • Article
  • Open Access
7 Citations
2,756 Views
18 Pages

The Impact of Bevacizumab and miR200c on EMT and EGFR-TKI Resistance in EGFR-Mutant Lung Cancer Organoids

  • Nobuaki Kobayashi,
  • Seigo Katakura,
  • Nobuhiko Fukuda,
  • Kohei Somekawa,
  • Ayami Kaneko and
  • Takeshi Kaneko

19 December 2024

Objectives: This research aims to investigate the mechanisms of resistance to epidermal growth factor receptor tyrosine kinase inhibitors (EGFR-TKIs) in non-small-cell lung cancer (NSCLC), particularly focusing on the role of the epithelial–mes...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
14 Citations
4,652 Views
19 Pages

Side- and Disease-Dependent Changes in Human Aortic Valve Cell Population and Transcriptomic Heterogeneity Determined by Single-Cell RNA Sequencing

  • Nicolas Villa-Roel,
  • Christian Park,
  • Aitor Andueza,
  • Kyung In Baek,
  • Ally Su,
  • Mark C. Blaser,
  • Bradley G. Leshnower,
  • Ajit Yoganathan,
  • Elena Aikawa and
  • Hanjoong Jo

19 December 2024

Background: Calcific aortic valve disease (CAVD) is a highly prevalent disease, especially in the elderly population, but there are no effective drug therapies other than aortic valve repair or replacement. CAVD develops preferentially on the fibrosa...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1,815 Views
14 Pages

Multiplex Detection of SNPs for Genetic Monitoring in Laboratory Mice by Luminex xTAG Assay

  • Jiaqi Zhou,
  • Jie Wei,
  • Hong Wang,
  • Huan Li,
  • Lan Zhao,
  • Rui Fu and
  • Bingfei Yue

19 December 2024

Background: The genetic quality of laboratory mice may have a direct impact on the results of research. Therefore, it is essential to improve genetic monitoring methods to guarantee research quality. However, few current methods boast high efficiency...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
4 Citations
1,486 Views
17 Pages

The Complete Mitochondrial Genome of the Luciocyprinus langsoni (Cypriniformes: Cyprinidae): Characterization, Phylogeny, and Genetic Diversity Analysis

  • Tiezhu Yang,
  • Chenxi Tan,
  • Liangjie Zhao,
  • Zhiguo Hu,
  • Chaoqun Su,
  • Fan Li,
  • Yuanye Ma,
  • Wenchao Zhang,
  • Xiaoyu Hao and
  • Qingqing He
  • + 2 authors

18 December 2024

Background: Luciocyprinus langsoni is a species belonging to the Cyprinidae family. The objective of this study is to gain a comprehensive understanding of its evolutionary history and genetic characteristics. Methods: The complete mitochondrial geno...

(This article belongs to the Special Issue Advances in Genes and Genomics of Aquatic Animals and Pathogens)
  • Systematic Review
  • Open Access
7 Citations
3,025 Views
17 Pages

Long Non-Coding RNAs as Diagnostic Biomarkers for Ischemic Stroke: A Systematic Review and Meta-Analysis

  • Jianwei Pan,
  • Weijian Fan,
  • Chenjie Gu,
  • Yongmei Xi,
  • Yu Wang and
  • Peter Wang

18 December 2024

Ischemic stroke is a serious cerebrovascular disease, highlighting the urgent need for reliable biomarkers for early diagnosis. Recent reports suggest that long non-coding RNAs (lncRNAs) can be potential biomarkers for ischemic stroke. Therefore, our...

(This article belongs to the Section Epigenomics)
  • Article
  • Open Access
2 Citations
2,326 Views
15 Pages

18 December 2024

Background: ASH1L (absent, small, or homeotic-like 1), a histone methyltransferase, has been identified as a high-risk gene for autism spectrum disorder (ASD). We previously showed that postnatal Ash1l severe deficiency in the prefrontal cortex (PFC)...

(This article belongs to the Special Issue The Genetic and Epigenetic Basis of Neurodevelopmental Disorders)
  • Article
  • Open Access
2 Citations
1,704 Views
11 Pages

Endurance Effort Affected Expression of Actinin 3 and Klotho Different Isoforms Basing on the Arabian Horses Model

  • Grzegorz Myćka,
  • Katarzyna Ropka-Molik,
  • Anna Cywińska and
  • Monika Stefaniuk-Szmukier

18 December 2024

Background: Among numerous genes that have been a focus of equine genetic research, the KL (Klotho) and ACTN3 (Alpha-actinin-3) genes stand out due to their significant roles in muscle function and overall health, as well as performance ability. Prev...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
1 Citations
2,545 Views
20 Pages

Unearthing Genetic Treasures: Exploring Lost Autochthonous Vitis vinifera Varieties in Lebanon

  • Carole Saliba,
  • Alba María Vargas,
  • María Teresa de Andrés,
  • Françoise Lamy,
  • Liliane Boukhdoud,
  • Rhea Kahale,
  • Thierry Robert,
  • Rani Azzi,
  • Noel Abinader and
  • Magda Bou Dagher Kharrat

17 December 2024

Background/Objectives: Lebanon, one of the oldest centers of grapevine (Vitis vinifera L.) cultivation, is home to a rich diversity of local grape varieties. This biodiversity is linked to the country’s unique topography and millennia of cultur...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
1 Citations
1,789 Views
8 Pages

Swedish Genome-Wide Haplotype Association Analysis Suggests Breast Cancer Loci with Varying Risk-Modifying Effects

  • Litika Vermani,
  • Elin Barnekow,
  • Wen Liu,
  • Camilla Wendt,
  • Per Hall,
  • Sara Margolin and
  • Annika Lindblom

17 December 2024

Background: To find support for risk-modifying genes in breast cancer, a haplotype GWAS in sporadic breast cancer cases was undertaken. The results were compared with the results from previous analyses in familial cases and all cases from the same Sw...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Review
  • Open Access
5 Citations
5,480 Views
15 Pages

17 December 2024

The tumor secretome comprises the totality of protein factors secreted by various cell components within the tumor microenvironment, serving as the primary medium for signal transduction between tumor cells and between tumor cells and stromal cells....

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
2 Citations
2,709 Views
18 Pages

Genome-Wide Identification and Evolutionary Analysis of Functional BBM-like Genes in Plant Species

  • Zhengyuan Hong,
  • Linghong Zhu,
  • Chaolei Liu,
  • Kejian Wang,
  • Yuchun Rao and
  • Hongwei Lu

17 December 2024

Background/Objectives: BABY BOOM (BBM), a transcription factor from the APETALA2 (AP2) protein family, plays a critical role in somatic embryo induction and apomixis. BBM has now been widely applied to induce apomixis or enhance plant transformation...

(This article belongs to the Special Issue Genetics and Genomics of Rice)
  • Review
  • Open Access
11 Citations
7,668 Views
16 Pages

Advancements and Challenges in Preimplantation Genetic Testing for Aneuploidies: In the Pathway to Non-Invasive Techniques

  • Ana del Arco de la Paz,
  • Carla Giménez-Rodríguez,
  • Aikaterini Selntigia,
  • Marcos Meseguer and
  • Daniela Galliano

17 December 2024

The evolution of preimplantation genetic testing for aneuploidy (PGT-A) techniques has been crucial in assisted reproductive technologies (ARTs), improving embryo selection and increasing success rates in in vitro fertilization (IVF) treatments. Tech...

(This article belongs to the Special Issue Current Advances and Future Perspectives on Preimplantation Genetic Testing)
  • Article
  • Open Access
2 Citations
3,521 Views
11 Pages

Conventional Cytogenetic Analysis of Solid Tumor Abnormalities: A 25-Year Review of Proficiency Test Results from the College of American Pathologists/American College of Medical Genetics and Genomics Cytogenetics Committee

  • Rachel K. Vanderschelden,
  • William R. Sukov,
  • Juli-Anne Gardner,
  • Catherine W. Rehder,
  • Brynn Levy,
  • Gopalrao V. Velagaleti,
  • Reha M. Toydemir,
  • Guilin Tang,
  • Brittany Boles and
  • Jess F. Peterson
  • + 5 authors

17 December 2024

Background: The joint College of American Pathologists/American College of Medical Genetics and Genomics Cytogenetics Committee works to ensure the competency and proficiency of clinical cytogenetic testing laboratories through proficiency testing (P...

(This article belongs to the Special Issue Clinical Cytogenetics: Current Advances and Future Perspectives)
  • Article
  • Open Access
3 Citations
6,396 Views
22 Pages

Heritability and Genome-Wide Association Study of Dog Behavioral Phenotypes in a Commercial Breeding Cohort

  • Nayan Bhowmik,
  • Shawna R. Cook,
  • Candace Croney,
  • Shanis Barnard,
  • Aynsley C. Romaniuk and
  • Kari J. Ekenstedt

17 December 2024

Background: Canine behavior plays an important role in the success of the human–dog relationship and the dog’s overall welfare, making selection for behavior a vital part of any breeding program. While behaviors are complex traits determi...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
3 Citations
15,425 Views
22 Pages

The Finnic Peoples of Russia: Genetic Structure Inferred from Genome-Wide and Y-Chromosome Data

  • Anastasia Agdzhoyan,
  • Georgy Ponomarev,
  • Vladimir Pylev,
  • Zhaneta Autleva (Kagazezheva),
  • Igor Gorin,
  • Igor Evsyukov,
  • Elvira Pocheshkhova,
  • Sergey Koshel,
  • Viacheslav Kuleshov and
  • Natalia Kuznetsova
  • + 1 author

17 December 2024

Background: Eastern Finnic populations, including Karelians, Veps, Votes, Ingrians, and Ingrian Finns, are a significant component of the history of Finnic populations, which have developed over ~3 kya. Yet, these groups remain understudied from a ge...

(This article belongs to the Section Population and Evolutionary Genetics and Genomics)
  • Article
  • Open Access
2 Citations
2,066 Views
20 Pages

17 December 2024

Background: Autism spectrum disorder (ASD) is a neurodevelopmental disorder characterized by limited interests, difficulties in social interactions, repetitive behaviors, and impairments in social communication. ASD tends to run in families, and twin...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
1 Citations
1,879 Views
12 Pages

Genetic Variations on Chromosome 6p21 Are Associated with Asthma Risk and Disease Severity: A Case–Control Study from Pakistan

  • Aqsa Aslam,
  • Susanne J. H. Vijverberg,
  • Anke-Hilse Maitland-van der Zee and
  • Muhammad Farooq Sabar

17 December 2024

Background: Genetic factors play a role in asthma severity. However, low- and middle-income countries have minimal contribution to genomic asthma research. The current study investigates the influence of an important genetic asthma region (6p21) on s...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1,888 Views
12 Pages

Genetic Composition of Polish Hucul Mare Families: mtDNA Diversity

  • Aleksandra Błaszczak,
  • Monika Stefaniuk-Szmukier,
  • Bogusława Długosz,
  • Adrianna Dominika Musiał,
  • Katarzyna Olczak and
  • Katarzyna Ropka-Molik

17 December 2024

Backround: The Hucul horse breed formed in the region of the Eastern Carpathians, likely through the natural crossbreeding of oriental horses. After World War II, their population significantly decreased, leading to the breeding being based on only 1...

(This article belongs to the Section Population and Evolutionary Genetics and Genomics)

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Genes - ISSN 2073-4425