HoBi-like Pestivirus Is Highly Prevalent in Cattle Herds in the Amazon Region (Northern Brazil)
Abstract
:1. Introduction
2. Materials and Methods
2.1. Target Population and Sample Size
2.2. RNA Isolation and RT–qPCR
2.3. Sequencing and Phylogenetic Analysis
2.4. Virus Neutralization
3. Results
3.1. RT–PCR and Phylogenetic Analyses
3.2. Virus Neutralization
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Target | Primer | Pestivirus Species * | Reference |
---|---|---|---|
5′UTR | Pesti F; Pesti R | BVDV-1, BVDV-2 | [40] |
324 F; 326 R ** | BVDV-1, BVDV-2, HoBiPeV | [41] | |
Panpesti F; Panpesti R | BVDV-1, BVDV-2, HoBiPeV | [31] | |
Npro | TF3; TR3 ** | HoBiPeV | [42] |
LV Pesti F; LV PestiR | BVDV-2 | [34] | |
BD1, BD3 | BVDV-1 | [4] | |
E2 | SF3, SR3 ** | HoBiPeV | [43] |
E2F, E2R | BVDV-1, BVDV-2 | [44] |
Federative State | VN Sample | Positive Samples | |||
---|---|---|---|---|---|
BVDV-1 | BVDV-2 | HoBiPeV | No Predominant Titer | ||
AM | 226 | 14 | 2 | 20 | 28 |
AP | 57 | 5 | 5 | 9 | 13 |
PA | 29 | 1 | 7 | 4 | 12 |
RR | 78 | 15 | 11 | 4 | 27 |
Total | 390 | 35 | 25 | 37 | 80 |
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Baumbach, L.F.; Mósena, A.C.S.; Alves, R.S.; Camargo, L.J.; Olegário, J.C.; Lobraico, L.R.; Costa, J.M.N.; Borba, M.R.; Bauermann, F.V.; Weber, M.N.; et al. HoBi-like Pestivirus Is Highly Prevalent in Cattle Herds in the Amazon Region (Northern Brazil). Viruses 2023, 15, 453. https://doi.org/10.3390/v15020453
Baumbach LF, Mósena ACS, Alves RS, Camargo LJ, Olegário JC, Lobraico LR, Costa JMN, Borba MR, Bauermann FV, Weber MN, et al. HoBi-like Pestivirus Is Highly Prevalent in Cattle Herds in the Amazon Region (Northern Brazil). Viruses. 2023; 15(2):453. https://doi.org/10.3390/v15020453
Chicago/Turabian StyleBaumbach, Leticia F., Ana Cristina S. Mósena, Raquel S. Alves, Laura J. Camargo, Juliana C. Olegário, Leonardo R. Lobraico, João Marcos N. Costa, Mauro R. Borba, Fernando V. Bauermann, Matheus N. Weber, and et al. 2023. "HoBi-like Pestivirus Is Highly Prevalent in Cattle Herds in the Amazon Region (Northern Brazil)" Viruses 15, no. 2: 453. https://doi.org/10.3390/v15020453
APA StyleBaumbach, L. F., Mósena, A. C. S., Alves, R. S., Camargo, L. J., Olegário, J. C., Lobraico, L. R., Costa, J. M. N., Borba, M. R., Bauermann, F. V., Weber, M. N., & Canal, C. W. (2023). HoBi-like Pestivirus Is Highly Prevalent in Cattle Herds in the Amazon Region (Northern Brazil). Viruses, 15(2), 453. https://doi.org/10.3390/v15020453