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Search Results (372)

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Keywords = fused ring

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17 pages, 901 KiB  
Article
Tuning the Activity of NbOPO4 with NiO for the Selective Conversion of Cyclohexanone as a Model Intermediate of Lignin Pyrolysis Bio-Oils
by Abarasi Hart and Jude A. Onwudili
Energies 2025, 18(15), 4106; https://doi.org/10.3390/en18154106 (registering DOI) - 2 Aug 2025
Abstract
Catalytic upgrading of pyrolysis oils is an important step for producing replacement hydrocarbon-rich liquid biofuels from biomass and can help to advance pyrolysis technology. Catalysts play a pivotal role in influencing the selectivity of chemical reactions leading to the formation of main compounds [...] Read more.
Catalytic upgrading of pyrolysis oils is an important step for producing replacement hydrocarbon-rich liquid biofuels from biomass and can help to advance pyrolysis technology. Catalysts play a pivotal role in influencing the selectivity of chemical reactions leading to the formation of main compounds in the final upgraded liquid products. The present work involved a systematic study of solvent-free catalytic reactions of cyclohexanone in the presence of hydrogen gas at 160 °C for 3 h in a batch reactor. Cyclohexanone can be produced from biomass through the selective hydrogenation of lignin-derived phenolics. Three types of catalysts comprising undoped NbOPO4, 10 wt% NiO/NbOPO4, and 30 wt% NiO/NbOPO4 were studied. Undoped NbOPO4 promoted both aldol condensation and the dehydration of cyclohexanol, producing fused ring aromatic hydrocarbons and hard char. With 30 wt% NiO/NbOPO4, extensive competitive hydrogenation of cyclohexanone to cyclohexanol was observed, along with the formation of C6 cyclic hydrocarbons. When compared to NbOPO4 and 30 wt% NiO/NbOPO4, the use of 10 wt% NiO/NbOPO4 produced superior selectivity towards bi-cycloalkanones (i.e., C12) at cyclohexanone conversion of 66.8 ± 1.82%. Overall, the 10 wt% NiO/NbOPO4 catalyst exhibited the best performance towards the production of precursor compounds that can be further hydrodeoxygenated into energy-dense aviation fuel hydrocarbons. Hence, the presence and loading of NiO was able to tune the activity and selectivity of NbOPO4, thereby influencing the final products obtained from the same cyclohexanone feedstock. This study underscores the potential of lignin-derived pyrolysis oils as important renewable feedstocks for producing replacement hydrocarbon solvents or feedstocks and high-density sustainable liquid hydrocarbon fuels via sequential and selective catalytic upgrading. Full article
43 pages, 7013 KiB  
Review
Fused-Linked and Spiro-Linked N-Containing Heterocycles
by Mikhail Yu. Moskalik and Bagrat A. Shainyan
Int. J. Mol. Sci. 2025, 26(15), 7435; https://doi.org/10.3390/ijms26157435 (registering DOI) - 1 Aug 2025
Viewed by 47
Abstract
Fused and spiro nitrogen-containing heterocycles play an important role as structural motifs in numerous biologically active natural products and pharmaceuticals. The review summarizes various approaches to the synthesis of three-, four-, five-, and six-membered fused and spiro heterocycles with one or two nitrogen [...] Read more.
Fused and spiro nitrogen-containing heterocycles play an important role as structural motifs in numerous biologically active natural products and pharmaceuticals. The review summarizes various approaches to the synthesis of three-, four-, five-, and six-membered fused and spiro heterocycles with one or two nitrogen atoms. The assembling of the titled compounds via cycloaddition, oxidative cyclization, intramolecular ring closure, and insertion of sextet intermediates—carbenes and nitrenes—is examined on a vast number of examples. Many of the reactions proceed with high regio-, stereo-, or diastereoselectivity and in excellent, up to quantitative, yield, which is of principal importance for the synthesis of chiral drug-like compounds. For most unusual and hardly predictable transformations, the mechanisms are given or referred to. Full article
(This article belongs to the Section Macromolecules)
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17 pages, 1693 KiB  
Article
Chirality Transfer and Oxazolidine Formation in Reaction of L and D Enantiomers of β-Hydroxy Amino Acids with Nitrogenous Carboxaldehydes and Nickel(II)
by Cynthia T. Brewer, Greg Brewer and Raymond J. Butcher
Molecules 2025, 30(14), 2913; https://doi.org/10.3390/molecules30142913 - 10 Jul 2025
Viewed by 346
Abstract
The reaction of either the L (2S3R) or D (2R3S) enantiomers of H2N-C*H(R)CO2 (R = -C*H(OH)CH3 or -C*H(OH)CH(CH3)2) and the L (2S) or D (2R) enantiomers [...] Read more.
The reaction of either the L (2S3R) or D (2R3S) enantiomers of H2N-C*H(R)CO2 (R = -C*H(OH)CH3 or -C*H(OH)CH(CH3)2) and the L (2S) or D (2R) enantiomers of H2N-C*H(C(CH3)2OH)CO2 with imidazole-4-carboxaldehyde and nickel(II) acetate in methanol yields a single stereoisomer of an oxazolidine. There is retention of chirality on ring positions 4 and 5 (if Cβ is chiral) of the oxazolidine, Cα and Cβ of the parent amino acid, and transfer of chirality to the newly generated stereogenic centers, ring positions 3, the amino acid nitrogen atom, NAA, and 2, the aldehyde carbon atom, Cald. Specifically, when Cα has an S configuration, both NAA and Cald are formed as R. Likewise, a Cα which is R results in both NAA and Cald being formed as S. For example, the reaction of L threonine (Cα is S and Cβ is R) with 4-imidazolecarboxaldehyde in the presence of nickel(II) gives the facial Λ NiL2, where L is (2R, 3R, 4S, 5R) 4-carboxylato-5-methyl-2-(4-imidazolyl)-1,3-oxazolidine. The same reaction with D threonine produces the enantiomeric Δ complex of (2S, 3S, 4R, 5S) 4-carboxylato-5-methyl-2-(4-imidazoyl)-1,3-oxazolidine. The high stereospecificity is thought to be based on the fused three-ring structure of the characterized nickel complexes in which the hydrogen atoms of Cα, NAA, and Cald must be cis to one another. Identical reactions occur with 2-pyridine carboxaldehyde and LT or DT. In contrast, the reactions of L allo threonine (2S3S) and the primary alcohols, L or D serine, give the conventional meridionally coordinated aldimine product. Full article
(This article belongs to the Special Issue Featured Papers in Organometallic Chemistry—2nd Edition)
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15 pages, 3898 KiB  
Article
Wireless Temperature Monitoring of a Shaft Based on Piezoelectric Energy Harvesting
by Piotr Micek and Dariusz Grzybek
Energies 2025, 18(14), 3620; https://doi.org/10.3390/en18143620 - 9 Jul 2025
Viewed by 237
Abstract
Wireless structural health monitoring is needed for machine elements of which the working motions prevent wired monitoring. Rotating machine shafts are such elements. Wired monitoring of the rotating shaft requires making significant changes to the shaft structure, primarily drilling a hole in the [...] Read more.
Wireless structural health monitoring is needed for machine elements of which the working motions prevent wired monitoring. Rotating machine shafts are such elements. Wired monitoring of the rotating shaft requires making significant changes to the shaft structure, primarily drilling a hole in the longitudinal axis of the shaft and installing a slip ring assembly at the end of the shaft. Such changes to the shaft structure are not always possible. This paper proposes the use of piezoelectric energy harvesting from a rotating shaft to power wireless temperature monitoring of the shaft surface. The main components of presented wireless temperature monitoring are three piezoelectric composite patches, three thermal fuses, a system for storing and distributing the harvested energy, and a radio transmitter. This article contains the results of experimental research of such wireless monitoring on a dedicated laboratory stand. This research included four connections of piezoelectric composite patches: delta, star, parallel, and series for different capacities of a storage capacitor. Based on experimental results, three parameters that influence the frequency of sending data packets by the presented wireless temperature monitoring are identified: amplitude of stress in the rotating shaft, rotation speed of the shaft, and the capacity of a storage capacitor. Full article
(This article belongs to the Special Issue Innovations and Applications in Piezoelectric Energy Harvesting)
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13 pages, 2045 KiB  
Article
Enhanced Nonlinear Optical Absorption in Fused-Ring Aromatic Donor–Acceptor–Donor Core Units of Y6 Derivatives
by Xingyuan Wen, Tianyang Dong, Xingzhi Wu, Jiabei Xu, Xiaofeng Shi, Yinglin Song, Chunru Wang and Li Jiang
Molecules 2025, 30(13), 2748; https://doi.org/10.3390/molecules30132748 - 26 Jun 2025
Viewed by 338
Abstract
This fundamental understanding of molecular structure–NLO property relationships provides critical design principles for next-generation optical limiting materials, quantum photonic devices, and ultrafast nonlinear optical switches, addressing the growing demand for high-performance organic optoelectronic materials in laser protection and photonic computing applications. In this [...] Read more.
This fundamental understanding of molecular structure–NLO property relationships provides critical design principles for next-generation optical limiting materials, quantum photonic devices, and ultrafast nonlinear optical switches, addressing the growing demand for high-performance organic optoelectronic materials in laser protection and photonic computing applications. In this study, it was observed that selenophene-incorporated fused D-A-D architectures exhibit a remarkable enhancement in two-photon absorption characteristics. By strategically modifying the heteroatomic composition of the Y6-derived fused-ring core, replacing thiophene (BDS) with selenophene (BDSe), the optimized system achieves unprecedented NLO performance. BDSe displays a nonlinear absorption coefficient (β) of 3.32 × 10−10 m/W and an effective two-photon absorption cross-section (σTPA) of 2428.2 GM under 532 nm with ns pulse excitation. Comprehensive characterization combining Z-scan measurements, transient absorption spectroscopy, and DFT calculations reveals that the heavy atom effect of selenium induces enhanced spin–orbit coupling, optimized intramolecular charge transfer dynamics and stabilized excited states, collectively contributing to the superior reverse saturable absorption behavior. It is believed that this molecular engineering strategy establishes critical structure–property relationships for the rational design of organic NLO materials. Full article
(This article belongs to the Section Physical Chemistry)
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36 pages, 5930 KiB  
Review
Pyrazolopyridines and Pyrazolopyrimidines as Functional Dipolar Scaffolds: An Approach Regarding Synthesis and Photophysics
by Silvia Cruz and Jaime Portilla
Chemistry 2025, 7(4), 106; https://doi.org/10.3390/chemistry7040106 - 24 Jun 2025
Viewed by 1207
Abstract
Pyrazolopyridines and pyrazolopyrimidines are 5:6 aza-fused N-heteroaromatic compounds (NHACs) comprising a pyrazole ring fused to a pyridine or pyrimidine ring. They exhibit dipolar behavior due to their π-excessive and π-deficient characteristics conferred by their five- and six-membered rings. These features favor their stability, [...] Read more.
Pyrazolopyridines and pyrazolopyrimidines are 5:6 aza-fused N-heteroaromatic compounds (NHACs) comprising a pyrazole ring fused to a pyridine or pyrimidine ring. They exhibit dipolar behavior due to their π-excessive and π-deficient characteristics conferred by their five- and six-membered rings. These features favor their stability, reactivity, and structural diversity, offering numerous modular and functional derivatives (e.g., pyrazolo[1,2-a]pyridines, pyrazolo[1,5-a]pyrimidines, etc.). They have been utilized to obtain relevant chemicals in pharmaceuticals, photophysics, industry, and materials science; thus, their synthesis is highly desirable for discovering novel or improved applications. Therefore, this review focuses on recent advances in the synthesis and applications of these compounds, considering reports from the last decade (2015–2024), with particular emphasis on photophysics, as they contain dipolar 5:6 aza-fused rings as essential scaffolds for this purpose. Full article
(This article belongs to the Section Molecular Organics)
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13 pages, 1157 KiB  
Article
Catalyst-Free Spontaneous Aza-Mannich/Lactamization Cascade Reaction: Easy Access to Polycyclic δ-Lactams
by Antonia Di Mola, Caterina Vietri, Consiglia Tedesco and Antonio Massa
Molecules 2025, 30(13), 2702; https://doi.org/10.3390/molecules30132702 - 23 Jun 2025
Viewed by 407
Abstract
Ring-fused azacyclic compounds are important building blocks in the synthesis of natural products and pharmaceutical agents. Herein, we report an effective and valuable one-pot approach to obtaining polycyclic fused δ-lactams from readily available 2-formylphenyl acetate and diamines under catalyst-free and green conditions. Full article
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14 pages, 1524 KiB  
Article
Design, Synthesis, Theoretical Study, and Antioxidant Activity of Aromaticity-Extended Resveratrol Derivatives Incorporating Chalcogen
by Sangwon Ko, Hyun Min Lim, Yeonho Song, Hyonseok Hwang and Jeong Tae Lee
Int. J. Mol. Sci. 2025, 26(12), 5872; https://doi.org/10.3390/ijms26125872 - 19 Jun 2025
Viewed by 447
Abstract
Naturally occurring antioxidants have attracted significant research interest, owing to their radical scavenging ability that can be improved via structural modifications. In this study, aromaticity-extended resveratrol analogues (35) containing chalcogens were designed and synthesized using ring closure and Horner–Wadsworth–Emmons [...] Read more.
Naturally occurring antioxidants have attracted significant research interest, owing to their radical scavenging ability that can be improved via structural modifications. In this study, aromaticity-extended resveratrol analogues (35) containing chalcogens were designed and synthesized using ring closure and Horner–Wadsworth–Emmons reactions. The antioxidant activities of the derivatives were evaluated using 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABST) assay. All resveratrol derivatives (35) exhibited higher radical scavenging activities than resveratrol 1 and analogue 2, with benzoselenophene-conjugated derivative 5 demonstrating the highest activity. The improved antioxidant performance of the resveratrol derivatives was attributed to the extended π conjugation resulting from the incorporation of fused rings, benzoheteroles. Additionally, the integration of benzoheteroles into resveratrol contributed to an efficient reduction in HOMO-LUMO gaps. This study demonstrates that aromaticity extension by introducing benzofuran, benzothiophene, and benzoselenophene is a feasible strategy for improving the antioxidant activity of naturally occurring oxidants. Full article
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20 pages, 4339 KiB  
Article
Multi-Scale Dynamic Weighted Fusion for Small-Sample Oil Seal Ring Point Cloud Completion with Transformers
by Wencong Yan, Yetong Liu, Liwen Meng, Enyong Xu, Changbo Lin and Yanmei Meng
Processes 2025, 13(6), 1625; https://doi.org/10.3390/pr13061625 - 22 May 2025
Viewed by 454
Abstract
Oil seals are vital components in industrial production, necessitating high-precision 3D reconstruction for automated geometric measurement and quality inspection. High-quality point cloud completion is integral to this process. However, existing methods heavily rely on large datasets and often yield sub-optimal outcomes—such as distorted [...] Read more.
Oil seals are vital components in industrial production, necessitating high-precision 3D reconstruction for automated geometric measurement and quality inspection. High-quality point cloud completion is integral to this process. However, existing methods heavily rely on large datasets and often yield sub-optimal outcomes—such as distorted geometry and uneven point distributions—under limited sample conditions, constraining their industrial applicability. To address this, we propose a point cloud completion network that integrates a dynamic weighted fusion of multi-scale features with Transformer enhancements. Our approach incorporates three key innovations: a multi-layer perceptron fused with EdgeConv to enhance local feature extraction for small-sample oil seal rings, a dynamic weighted fusion strategy to adaptively optimize global feature integration across varying missing rates of oil seal rings, and a Transformer-enhanced multi-layer perceptron to ensure geometric consistency by linking global and local features. These innovations collectively enable high-quality point cloud completion for small-sample oil seal rings, achieving significant improvements at a 25% missing rate, reducing CD by 46%, EMD by 49%, and MMD by 74% compared to PF-Net. Experiments on the ShapeNet-Part dataset further validate the model’s strong generalizability across diverse categories. Experimental results on the industrial oil seal ring dataset and the small-sample ShapeNet sub-dataset show that our approach exhibits highly competitive performance compared to existing models. Full article
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17 pages, 2664 KiB  
Article
Exploring the Chemical and Pharmaceutical Potential of Kapakahines A–G Using Conceptual Density Functional Theory-Based Computational Peptidology
by Norma Flores-Holguín, Juan Frau and Daniel Glossman-Mitnik
Computation 2025, 13(5), 111; https://doi.org/10.3390/computation13050111 - 7 May 2025
Viewed by 533
Abstract
Kapakahines A–G are natural products isolated from the marine sponge Carteriospongia sp., characterized by complex molecular architectures composed of fused rings and diverse functional groups. Preliminary studies have indicated that some of these peptides may exhibit cytotoxic and antitumor activities, which has prompted [...] Read more.
Kapakahines A–G are natural products isolated from the marine sponge Carteriospongia sp., characterized by complex molecular architectures composed of fused rings and diverse functional groups. Preliminary studies have indicated that some of these peptides may exhibit cytotoxic and antitumor activities, which has prompted interest in further exploring their chemical and pharmacokinetic properties. Computational chemistry—particularly Conceptual Density Functional Theory (CDFT)-based Computational Peptidology (CP)—offers a valuable framework for investigating such compounds. In this study, the CDFT-CP approach is applied to analyze the structural and electronic properties of Kapakahines A–G. Alongside the calculation of global and local reactivity descriptors, predicted ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) profiles and pharmacokinetic parameters, including pKa and LogP, are evaluated. The integrated computational analysis provides insights into the stability, reactivity, and potential drug-like behavior of these marine-derived cyclopeptides and contributes to the theoretical groundwork for future studies aimed at optimizing their bioactivity and safety profiles. Full article
(This article belongs to the Section Computational Chemistry)
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14 pages, 1555 KiB  
Article
Synthesis of 1,4-Benzodiazepines via Intramolecular C–N Bond Coupling and Ring Opening of Azetidines
by Xin-Ming Xu, Sen Chen, Shao-Lei Duan, Xiang-Min Wang, Qian Liu and Kai Sun
Molecules 2025, 30(9), 2014; https://doi.org/10.3390/molecules30092014 - 30 Apr 2025
Viewed by 1291
Abstract
A facile and efficient synthesis of functionalized 1,4-benzodiazepine derivatives under mild conditions was developed. The CuI/N,N-dimethylglycine-catalyzed intramolecular cross-coupling reaction of 1-(2-bromobenzyl)azetidine-2-carboxamides proceeded smoothly under mild conditions to provide 1,4,9,10a-tetrahydroazeto[1,2-a]benzo[e][1,4]diazepin-10(2H)-ones. The resulting azetidine-fused 1,4-benzodiazepine compounds underwent [...] Read more.
A facile and efficient synthesis of functionalized 1,4-benzodiazepine derivatives under mild conditions was developed. The CuI/N,N-dimethylglycine-catalyzed intramolecular cross-coupling reaction of 1-(2-bromobenzyl)azetidine-2-carboxamides proceeded smoothly under mild conditions to provide 1,4,9,10a-tetrahydroazeto[1,2-a]benzo[e][1,4]diazepin-10(2H)-ones. The resulting azetidine-fused 1,4-benzodiazepine compounds underwent consecutive N-methylation with methyl triflate and the opening of the four-membered heterocyclic ring by NaN3, KCN and PhSNa to produce diverse 1,4-benzodiazepine derivatives in good to excellent yields. Upon treatment with methyl chloroformate, on the other hand, the 1,4,9,10a-tetrahydroazeto[1,2-a]benzo[e][1,4]diazepin-10(2H)-ones were straightforwardly converted into 2-chloroethyl-substituted 1,4-benzodiazepine derivatives. Full article
(This article belongs to the Special Issue Synthesis, Modification and Application of Heterocyclic Compounds)
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28 pages, 11443 KiB  
Article
Synthesis and Spectroscopic Characterization of Bis(thiadiazolo)benzoporphyrinoids: Insights into the Properties of Porphyrin-Type Systems with Strongly Electron-Withdrawing β,β’-Fused Rings
by Timothy D. Lash, Catherine M. Cillo and Deyaa I. AbuSalim
Molecules 2025, 30(8), 1822; https://doi.org/10.3390/molecules30081822 - 18 Apr 2025
Viewed by 472
Abstract
A series of porphyrinoids fused to highly electron-withdrawing bis(thiadiazolo)benzene units have been prepared and spectroscopically characterized. These structures have modified chromophores and exhibit large bathochromic shifts. The nickel(II), copper(II) and zinc complexes of a bis(thiadiazolo)benzoporphyrin were prepared, and these showed strong absorptions above [...] Read more.
A series of porphyrinoids fused to highly electron-withdrawing bis(thiadiazolo)benzene units have been prepared and spectroscopically characterized. These structures have modified chromophores and exhibit large bathochromic shifts. The nickel(II), copper(II) and zinc complexes of a bis(thiadiazolo)benzoporphyrin were prepared, and these showed strong absorptions above 600 nm that shifted to longer wavelengths with increasing atomic number for the coordinated metal cations. Although the investigated porphyrinoids were poorly soluble, proton NMR data could be obtained, and these demonstrated that the structures possess global aromatic character. This was confirmed with nucleus-independent chemical shift (NICS) calculations and anisotropy of induced current density (AICD) plots. The AICD plots also demonstrate that the fused heterocyclic unit is disconnected from the porphyrinoid π-system, and in this respect, it differs from phenanthroline-fused porphyrinoids as it shows the presence of extended conjugation pathways. Full article
(This article belongs to the Special Issue Porphyrin-Based Compounds: Synthesis and Application, 2nd Edition)
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10 pages, 2365 KiB  
Article
Remarkably Efficient [4+4] Dimerization of [n]-Cyclacenes
by Ankit Somani, Divanshu Gupta and Holger F. Bettinger
Chemistry 2025, 7(2), 62; https://doi.org/10.3390/chemistry7020062 - 12 Apr 2025
Cited by 1 | Viewed by 598
Abstract
Cyclacenes with the general formula C4nH2n are cyclic analogs of acenes. Acenes are well-known for their high reactivity, which increases with the number of fused benzene rings. The cyclic strain, absence of a Clar sextet, and diradical or [...] Read more.
Cyclacenes with the general formula C4nH2n are cyclic analogs of acenes. Acenes are well-known for their high reactivity, which increases with the number of fused benzene rings. The cyclic strain, absence of a Clar sextet, and diradical or polyradical nature are expected to render cyclacenes highly reactive under ambient conditions. Their primary decomposition pathway is anticipated to involve dimerization or polymerization. We explore the reaction pathway of the [π4s + π4s] dimerization of [n]-cyclacenes for 6 ≤ n ≤ 20 by density functional theory (DFT) using spin-unrestricted and thermally-assisted-occupation (TAO) formalisms. Computational analysis predicts a stepwise reaction mechanism that starts with the formation of a van der Waals complex and proceeds through a transition state to an intermediate with a single new C–C bond and two unsaturated valences. A subsequent second transition state results in the formation of the dimerization product. However, for smaller cyclacenes (n < 10), neither the van der Waals complex nor the first transition state is involved, and the intermediate is formed without a barrier. The largest [20]-cyclacene investigated exhibits the highest barriers for these processes. However, with a barrier as low as 3.9 kcal/mol at the UB3LYP-D3(BJ)/6-31G(d) level of theory, dimerization is anticipated to occur very rapidly. Full article
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23 pages, 15163 KiB  
Review
The Role of Flow Chemistry on the Synthesis of Pyrazoles, Pyrazolines and Pyrazole-Fused Scaffolds
by Catarina M. Correia, Artur M. S. Silva and Vera L. M. Silva
Molecules 2025, 30(7), 1582; https://doi.org/10.3390/molecules30071582 - 2 Apr 2025
Cited by 1 | Viewed by 2832
Abstract
Nitrogen-containing heterocycles are fundamental scaffolds in organic chemistry, particularly due to their prevalence in pharmaceuticals, agrochemicals and materials science. Among them, five-membered rings, containing two nitrogen atoms in adjacent positions—such as pyrazoles, pyrazolines and indazoles—are especially significant due to their versatile biological activities [...] Read more.
Nitrogen-containing heterocycles are fundamental scaffolds in organic chemistry, particularly due to their prevalence in pharmaceuticals, agrochemicals and materials science. Among them, five-membered rings, containing two nitrogen atoms in adjacent positions—such as pyrazoles, pyrazolines and indazoles—are especially significant due to their versatile biological activities and structural properties, which led to the search for greener, faster and more efficient methods for their synthesis. Conventional batch synthesis methods, while effective, often face challenges related to reaction efficiency, scalability and safety. Flow chemistry has emerged as a powerful alternative, offering enhanced control over reaction parameters, improved safety profiles and opportunities for scaling up synthesis processes efficiently. This review explores the impact of flow chemistry on the synthesis of these pivotal heterocycles, highlighting its advantages over the conventional batch methods. Although indazoles have a five-membered ring fused with a benzene ring, they will also be considered in this review due to their biological relevance. Full article
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26 pages, 6566 KiB  
Review
The B30.2/SPRY-Domain: A Versatile Binding Scaffold in Supramolecular Assemblies of Eukaryotes
by Peer R. E. Mittl and Hans-Dietmar Beer
Crystals 2025, 15(3), 281; https://doi.org/10.3390/cryst15030281 - 19 Mar 2025
Viewed by 826
Abstract
B30.2 domains, sometimes referred to as PRY/SPRY domains, were originally identified by sequence profiling methods at the gene level. The B30.2 domain comprises a concanavalin A-like fold consisting of two twisted seven-stranded anti-parallel β-sheets. B30.2 domains are present in about 150 human and [...] Read more.
B30.2 domains, sometimes referred to as PRY/SPRY domains, were originally identified by sequence profiling methods at the gene level. The B30.2 domain comprises a concanavalin A-like fold consisting of two twisted seven-stranded anti-parallel β-sheets. B30.2 domains are present in about 150 human and 700 eukaryotic proteins, usually fused to other domains. The B30.2 domain represents a scaffold, which, through six variable loops, binds different unrelated peptides or endogenous low-molecular-weight compounds. At the cellular level, B30.2 proteins engage in supramolecular assemblies with important signaling functions. In humans, B30.2 domains are often found in E3-ligases, such as tripartite motif (Trim) proteins, SPRY domain-containing SOCS box proteins, Ran binding protein 9 and −10, Ret-finger protein-like, and Ring-finger proteins. The B30.2 protein recognizes the target and recruits the E2-conjugase by means of the fused domains, often involving specific adaptor proteins. Further well-studied B30.2 proteins are the methyltransferase adaptor protein Ash2L, some butyrophilins, and Ryanodine Receptors. Although the affinity of an isolated B30.2 domain to its ligand might be weak, it can increase strongly due to avidity effects upon recognition of oligomeric targets or in the context of macromolecular machines. Full article
(This article belongs to the Special Issue Protein Crystallography: The State of the Art)
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