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Search Results (1,766)

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20 pages, 4055 KiB  
Article
Biphasic Salt Effects on Lycium ruthenicum Germination and Growth Linked to Carbon Fixation and Photosynthesis Gene Expression
by Xinmeng Qiao, Ruyuan Wang, Lanying Liu, Boya Cui, Xinrui Zhao, Min Yin, Pirui Li, Xu Feng and Yu Shan
Int. J. Mol. Sci. 2025, 26(15), 7537; https://doi.org/10.3390/ijms26157537 (registering DOI) - 4 Aug 2025
Abstract
Since the onset of industrialization, the safety of arable land has become a pressing global concern, with soil salinization emerging as a critical threat to agricultural productivity and food security. To address this challenge, the cultivation of economically valuable salt-tolerant plants has been [...] Read more.
Since the onset of industrialization, the safety of arable land has become a pressing global concern, with soil salinization emerging as a critical threat to agricultural productivity and food security. To address this challenge, the cultivation of economically valuable salt-tolerant plants has been proposed as a viable strategy. In the study, we investigated the physiological and molecular responses of Lycium ruthenicum Murr. to varying NaCl concentrations. Results revealed a concentration-dependent dual effect: low NaCl levels significantly promoted seed germination, while high concentrations exerted strong inhibitory effects. To elucidate the mechanisms underlying these divergent responses, a combined analysis of metabolomics and transcriptomics was applied to identify key metabolic pathways and genes. Notably, salt stress enhanced photosynthetic efficiency through coordinated modulation of ribulose 5-phosphate and erythrose-4-phosphate levels, coupled with the upregulation of critical genes encoding RPIA (Ribose 5-phosphate isomerase A) and RuBisCO (Ribulose-1,5-bisphosphate carboxylase/oxygenase). Under low salt stress, L. ruthenicum maintained intact cellular membrane structures and minimized oxidative damage, thereby supporting germination and early growth. In contrast, high salinity severely disrupted PS I (Photosynthesis system I) functionality, blocking energy flow into this pathway while simultaneously inducing membrane lipid peroxidation and triggering pronounced cellular degradation. This ultimately suppressed seed germination rates and impaired root elongation. These findings suggested a mechanistic framework for understanding L. ruthenicum adaptation under salt stress and pointed out a new way for breeding salt-tolerant crops and understanding the mechanism. Full article
(This article belongs to the Section Molecular Biology)
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17 pages, 5497 KiB  
Review
Hydrogel Applications for Cultural Heritage Protection: Emphasis on Antifungal Efficacy and Emerging Research Directions
by Meijun Chen, Shunyu Xiang and Huan Tang
Gels 2025, 11(8), 606; https://doi.org/10.3390/gels11080606 - 2 Aug 2025
Viewed by 74
Abstract
Hydrogels, characterized by their high water content, tunable mechanical properties, and excellent biocompatibility, have emerged as a promising material platform for the preservation of cultural heritage. Their unique physicochemical features enable non-invasive and adaptable solutions for environmental regulation, structural stabilization, and antifungal protection. [...] Read more.
Hydrogels, characterized by their high water content, tunable mechanical properties, and excellent biocompatibility, have emerged as a promising material platform for the preservation of cultural heritage. Their unique physicochemical features enable non-invasive and adaptable solutions for environmental regulation, structural stabilization, and antifungal protection. This review provides a comprehensive overview of recent progress in hydrogel-based strategies specifically developed for the conservation of cultural relics, with a particular focus on antifungal performance—an essential factor in preventing biodeterioration. Current hydrogel systems, composed of natural or synthetic polymer networks integrated with antifungal agents, demonstrate the ability to suppress fungal growth, regulate humidity, alleviate mechanical stress, and ensure minimal damage to artifacts during application. This review also highlights future research directions, such as the application prospects of novel materials, including stimuli-responsive hydrogels and self-dissolving hydrogels. As an early exploration of the use of hydrogels in antifungal protection and broader cultural heritage conservation, this work is expected to promote the wider application of this emerging technology, contributing to the effective preservation and long-term transmission of cultural heritage worldwide. Full article
(This article belongs to the Special Issue Properties and Structure of Hydrogel-Related Materials (2nd Edition))
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25 pages, 2128 KiB  
Article
Central Insulin-Like Growth Factor-1-Induced Anxiolytic and Antidepressant Effects in a Rat Model of Sporadic Alzheimer’s Disease Are Associated with the Peripheral Suppression of Inflammation
by Joanna Dunacka, Beata Grembecka and Danuta Wrona
Cells 2025, 14(15), 1189; https://doi.org/10.3390/cells14151189 - 1 Aug 2025
Viewed by 187
Abstract
(1) Insulin-like growth factor-1 (IGF-1) is a neurotrophin with anti-inflammatory properties. Neuroinflammation and stress activate peripheral immune mechanisms, which may contribute to the development of depression and anxiety in sporadic Alzheimer’s disease (sAD). This study aims to evaluate whether intracerebroventricular (ICV) premedication with [...] Read more.
(1) Insulin-like growth factor-1 (IGF-1) is a neurotrophin with anti-inflammatory properties. Neuroinflammation and stress activate peripheral immune mechanisms, which may contribute to the development of depression and anxiety in sporadic Alzheimer’s disease (sAD). This study aims to evaluate whether intracerebroventricular (ICV) premedication with IGF-1 in a rat model of streptozotocin (STZ)-induced neuroinflammation can prevent the emergence of anhedonia and anxiety-like behavior by impacting the peripheral inflammatory responses. (2) Male Wistar rats were subjected to double ICVSTZ (total dose: 3 mg/kg) and ICVIGF-1 injections (total dose: 2 µg). We analyzed the level of anhedonia (sucrose preference), anxiety (elevated plus maze), peripheral inflammation (hematological and cytometric measurement of leukocyte populations, interleukin (IL)-6), and corticosterone concentration at 7 (very early stage, VES), 45 (early stage, ES), and 90 days after STZ injections (late stage, LS). (3) We found that ICVIGF-1 administration reduces behavioral symptoms: anhedonia (ES and LS) and anxiety (VES, ES), and peripheral inflammation: number of leukocytes, lymphocytes, T lymphocytes, monocytes, granulocytes, IL-6, and corticosterone concentration (LS) in the rat model of sAD. (4) The obtained results demonstrate beneficial effects of central IGF-1 administration on neuropsychiatric symptoms and peripheral immune system activation during disease progression in the rat model of sAD. Full article
(This article belongs to the Section Cells of the Nervous System)
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35 pages, 10887 KiB  
Article
Heteroaryl-Capped Hydroxamic Acid Derivatives with Varied Linkers: Synthesis and Anticancer Evaluation with Various Apoptosis Analyses in Breast Cancer Cells, Including Docking, Simulation, DFT, and ADMET Studies
by Ekta Shirbhate, Biplob Koch, Vaibhav Singh, Akanksha Dubey, Haya Khader Ahmad Yasin and Harish Rajak
Pharmaceuticals 2025, 18(8), 1148; https://doi.org/10.3390/ph18081148 - 1 Aug 2025
Viewed by 104
Abstract
Background/Objectives: Cancer suffers from unresolved therapeutic challenges owing to the lack of targeted therapies and heightened recurrence risk. This study aimed to investigate the new series of hydroxamate by structurally modifying the pharmacophore of vorinostat. Methods: The present work involves the synthesis of [...] Read more.
Background/Objectives: Cancer suffers from unresolved therapeutic challenges owing to the lack of targeted therapies and heightened recurrence risk. This study aimed to investigate the new series of hydroxamate by structurally modifying the pharmacophore of vorinostat. Methods: The present work involves the synthesis of 15 differently substituted 2H-1,2,3-triazole-based hydroxamide analogs by employing triazole ring as a cap with varied linker fragments. The compounds were evaluated for their anticancer effect, especially their anti-breast cancer response. Molecular docking and molecular dynamics simulations were conducted to examine binding interactions. Results: Results indicated that among all synthesized hybrids, the molecule VI(i) inhibits the growth of MCF-7 and A-549 cells (GI50 < 10 μg/mL) in an antiproliferative assay. Compound VI(i) was also tested for cytotoxic activity by employing an MTT assay against A549, MCF-7, and MDA-MB-231 cell lines, and the findings indicate its potent anticancer response, especially against MCF-7 cells with IC50 of 60 µg/mL. However, it experiences minimal toxicity towards the normal cell line (HEK-293). Mechanistic studies revealed a dual-pathway activation: first, apoptosis (17.18% of early and 10.22% of late apoptotic cells by annexin V/PI analysis); second, cell cycle arrest at the S and G2/M phases. It also promotes ROS generation in a concentration-dependent manner. The HDAC–inhibitory assay, extended in silico molecular docking, and MD simulation experiments further validated its significant binding affinity towards HDAC 1 and 6 isoforms. DFT and ADMET screening further support the biological proclivity of the title compounds. The notable biological contribution of VI(i) highlights it as a potential candidate, especially against breast cancer cells. Full article
(This article belongs to the Section Medicinal Chemistry)
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19 pages, 14783 KiB  
Article
Behavior of Osteoblastic Lineage Cells When in the Presence of Tamoxifen: In Vitro and In Vivo Studies on Osseointegration
by Luiz Guilherme Fiorin, Emanuela Galliera, Henrique R. Matheus, Dolaji Henin, Edilson Ervolino, Gabriela Carrara Simionato, Juliano Milanezi de Almeida and Claudia Dellavia
Dent. J. 2025, 13(8), 351; https://doi.org/10.3390/dj13080351 - 1 Aug 2025
Viewed by 73
Abstract
Background/Objectives: Tamoxifen, a selective estrogen receptor modulator widely used as an adjunct in the treatment of breast cancer, has known effects on bone metabolism, although its impact on osseointegration and cellular responses during early bone healing remains unclear. Understanding these effects is essential [...] Read more.
Background/Objectives: Tamoxifen, a selective estrogen receptor modulator widely used as an adjunct in the treatment of breast cancer, has known effects on bone metabolism, although its impact on osseointegration and cellular responses during early bone healing remains unclear. Understanding these effects is essential given the increasing use of dental implants in cancer survivors. The study aimed to observe the influence of tamoxifen on human osteosarcoma (SAOS-2) cells lines, as well on the osseointegration of titanium implants in ovariectomized female rats. Methods: SAOS-2 cells were incubated with Dulbecco’s modified growth medium. Six titanium (Ti) disks were used at each time point. The samples were divided into groups with the presence (TAM, n = 36) or not (CTR, n = 36) of tamoxifen in a concentration of 2 μM. In vivo, 72 animals were divided in groups with bilateral ovariectomy or SHAM and tamoxifen administration or not (15 mg/kg). Cell viability, mineralization rate, and collagen synthesis were assessed, as well as bone/implant contact (BIC) and bone ingrowth (BIN). Results: Tamoxifen caused a decrease in SAOS-2 viability, although an increase in the mineralization rate was observed. In vivo, the TAM groups presented higher BIC and BIN when compared to their control, but a lower percentage of mature collagen cells. Conclusions: Based on our findings, in vitro, the therapy with TAM slightly reduced the viability of SAOS-2 cells while significantly increasing the mineralization rate. In vivo, the therapy positively influenced BIC and BIN during the osseointegration phase. Full article
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14 pages, 31608 KiB  
Article
Primary Metabolic Variations in Maize Plants Affected by Different Levels of Nitrogen Supply
by The Ngoc Phuong Nguyen, Rose Nimoh Serwaa and Jwakyung Sung
Metabolites 2025, 15(8), 519; https://doi.org/10.3390/metabo15080519 - 1 Aug 2025
Viewed by 165
Abstract
Background/Objectives: Nitrogen (N) is an essential macronutrient that strongly influences maize growth and metabolism. While many studies have focused on nitrogen responses during later developmental stages, early-stage physiological and metabolic responses remain less explored. This study investigated the effect of different nitrogen-deficient [...] Read more.
Background/Objectives: Nitrogen (N) is an essential macronutrient that strongly influences maize growth and metabolism. While many studies have focused on nitrogen responses during later developmental stages, early-stage physiological and metabolic responses remain less explored. This study investigated the effect of different nitrogen-deficient levels on maize seedling growth and primary metabolite profiles. Methods: Seedlings were treated with N-modified nutrient solution, which contained 0% to 120% of the standard nitrogen level (8.5 mM). Results: Nitrogen starvation (N0) significantly reduced plant height (by 11–14%), shoot fresh weight (over 30%) compared to the optimal N supply (N100). Total leaf nitrogen content under N0–N20 was less than half of that in N100, whereas moderate N deficiency resulted in moderate reductions in growth and nitrogen content. Metabolite analysis revealed that N deficiency induced the accumulation of soluble sugars and organic acids (up to threefold), while sufficient N promoted the synthesis of amino acids related to nitrogen assimilation and protein biosynthesis. Statistical analyses (PCA and ANOVA) showed that both genotypes (MB and TYC) and tissue type (upper vs. lower leaves) influenced the metabolic response to nitrogen, with MB displaying more consistent shifts and TYC exhibiting greater variability under moderate stress. Conclusions: These findings highlight the sensitivity of maize seedlings to early nitrogen deficiency, with severity influenced by nitrogen level, tissue-specific position, and genotype; thus underscore the close coordination between physiological growth and primary metabolic pathways in response to nitrogen availability. These findings expand current knowledge of nitrogen response mechanisms and offer practical insights for improving nitrogen use efficiency in maize cultivation. Full article
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15 pages, 2636 KiB  
Article
Genome-Wide Identification of DNA Methyltransferase and Demethylase in Populus sect. Turanga and Their Potential Roles in Heteromorphic Leaf Development in Populus euphratica
by Chen Qiu, Jianhao Sun, Mingyu Jia, Xiaoli Han, Jia Song, Zhongshuai Gai and Zhijun Li
Plants 2025, 14(15), 2370; https://doi.org/10.3390/plants14152370 - 1 Aug 2025
Viewed by 188
Abstract
DNA methylation, mediated by DNA methyltransferases (DMTs) and demethylases (DMLs), is an important epigenetic modification that maintains genomic stability and regulates gene expression in plant growth, development, and stress responses. However, a comprehensive characterization of these gene families in Populus sect. Turanga remains [...] Read more.
DNA methylation, mediated by DNA methyltransferases (DMTs) and demethylases (DMLs), is an important epigenetic modification that maintains genomic stability and regulates gene expression in plant growth, development, and stress responses. However, a comprehensive characterization of these gene families in Populus sect. Turanga remains lacking. In this study, eight PeDMT and two PeDML genes were identified in Populus euphratica, and six PpDMT and three PpDML genes in Populus pruinosa. Phylogenetic analysis revealed that DMTs and DMLs could be classified into four and three subfamilies, respectively. The analysis of cis-acting elements indicated that the promoter regions of both DMTs and DMLs were enriched with elements responsive to growth and development, light, phytohormones, and stress. Collinearity analysis detected three segmentally duplicated gene pairs (PeDMT5/8, PeDML1/2, and PpDML2/3), suggesting potential functional diversification. Transcriptome profiling showed that several PeDMTs and PeDMLs exhibited leaf shape- and developmental stage-specific expression patterns, with PeDML1 highly expressed during early stages and in broad-ovate leaves. Whole-genome bisulfite sequencing revealed corresponding decreases in DNA methylation levels, suggesting that active demethylation may contribute to heteromorphic leaf formation. Overall, this study provides significant insights for exploring the functions and expression regulation of plant DMTs and DMLs and will contribute to future research unraveling the molecular mechanisms of epigenetic regulation in P. euphratica. Full article
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21 pages, 3996 KiB  
Technical Note
Design of a Standards-Based Cloud Platform to Enhance the Practicality of Agrometeorological Countermeasures
by Sejin Han, Minju Baek, Jin-Ho Lee, Sang-Hyun Park, Seung-Gil Hong, Yong-Kyu Han and Yong-Soon Shin
Atmosphere 2025, 16(8), 924; https://doi.org/10.3390/atmos16080924 - 30 Jul 2025
Viewed by 161
Abstract
The need for systems that forecast and respond proactively to meteorological disasters is growing amid climate variability. Although the early warning system in South Korea includes countermeasure information, it remains limited in terms of data recency, granularity, and regional adaptability. Additionally, its closed [...] Read more.
The need for systems that forecast and respond proactively to meteorological disasters is growing amid climate variability. Although the early warning system in South Korea includes countermeasure information, it remains limited in terms of data recency, granularity, and regional adaptability. Additionally, its closed architecture hinders interoperability with external systems. This study aims to redesign the countermeasure function as an independent cloud-based platform grounded in the common standard terminology framework in South Korea. A multi-dimensional data model was developed using attributes such as crop type, cultivation characteristics, growth stage, disaster type, and risk level. The platform incorporates user-specific customization features and history tracking capabilities, and it is structured using a microservices architecture to ensure modularity and scalability. The proposed system enables real-time management and dissemination of localized countermeasure suggestions tailored to various user types, including central and local governments and farmers. This study offers a practical model for enhancing the precision and applicability of agrometeorological response information. It is expected to serve as a scalable reference platform for future integration with external agricultural information systems. Full article
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5 pages, 628 KiB  
Interesting Images
Infrared Photography: A Novel Diagnostic Approach for Ocular Surface Abnormalities Due to Vitamin A Deficiency
by Hideki Fukuoka and Chie Sotozono
Diagnostics 2025, 15(15), 1910; https://doi.org/10.3390/diagnostics15151910 - 30 Jul 2025
Viewed by 242
Abstract
Vitamin A deficiency (VAD) remains a significant cause of preventable blindness worldwide, with ocular surface changes representing early manifestations that require prompt recognition and treatment. Conventional examination methods are capable of detecting advanced changes; however, subtle conjunctival abnormalities may be overlooked, potentially delaying [...] Read more.
Vitamin A deficiency (VAD) remains a significant cause of preventable blindness worldwide, with ocular surface changes representing early manifestations that require prompt recognition and treatment. Conventional examination methods are capable of detecting advanced changes; however, subtle conjunctival abnormalities may be overlooked, potentially delaying the administration of appropriate interventions. We herein present the case of a 5-year-old Japanese boy with severe VAD due to selective eating patterns. This case demonstrates the utility of infrared photography as a novel diagnostic approach for detecting and monitoring conjunctival surface abnormalities. The patient exhibited symptoms including corneal ulcers, night blindness, and reduced visual acuity. Furthermore, blood tests revealed undetectable levels of vitamin A (5 IU/dL), despite relatively normal physical growth parameters. Conventional slit-lamp examination revealed characteristic sandpaper-like conjunctival changes. However, infrared photography (700–900 nm wavelength) revealed distinct abnormal patterns of conjunctival surface folds and keratinization that were not fully appreciated on a routine examination. Following high-dose vitamin A supplementation (4000 IU/day), complete resolution of ocular abnormalities was achieved within 2 months, with infrared imaging objectively documenting treatment response and normalization of conjunctival surface patterns. This case underscores the potential for severe VAD in developed countries, particularly in the context of dietary restrictions, thereby underscoring the significance of a comprehensive dietary history and a meticulous ocular examination. Infrared photography provides a number of advantages, including the capacity for non-invasive assessment, enhanced visualization of subtle changes, objective monitoring of treatment response, and cost-effectiveness due to the use of readily available equipment. This technique represents an underutilized diagnostic modality with particular promise for screening programs and clinical monitoring of VAD-related ocular manifestations, potentially preventing irreversible visual loss through early detection and intervention. Full article
(This article belongs to the Collection Interesting Images)
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24 pages, 6890 KiB  
Article
Multi-Level Transcriptomic and Physiological Responses of Aconitum kusnezoffii to Different Light Intensities Reveal a Moderate-Light Adaptation Strategy
by Kefan Cao, Yingtong Mu and Xiaoming Zhang
Genes 2025, 16(8), 898; https://doi.org/10.3390/genes16080898 - 28 Jul 2025
Viewed by 270
Abstract
Objectives: Light intensity is a critical environmental factor regulating plant growth, development, and stress adaptation. However, the physiological and molecular mechanisms underlying light responses in Aconitum kusnezoffii, a valuable alpine medicinal plant, remain poorly understood. This study aimed to elucidate the adaptive [...] Read more.
Objectives: Light intensity is a critical environmental factor regulating plant growth, development, and stress adaptation. However, the physiological and molecular mechanisms underlying light responses in Aconitum kusnezoffii, a valuable alpine medicinal plant, remain poorly understood. This study aimed to elucidate the adaptive strategies of A. kusnezoffii under different light intensities through integrated physiological and transcriptomic analyses. Methods: Two-year-old A. kusnezoffii plants were exposed to three controlled light regimes (790, 620, and 450 lx). Leaf anatomical traits were assessed via histological sectioning and microscopic imaging. Antioxidant enzyme activities (CAT, POD, and SOD), membrane lipid peroxidation (MDA content), osmoregulatory substances, and carbon metabolites were quantified using standard biochemical assays. Transcriptomic profiling was conducted using Illumina RNA-seq, with differentially expressed genes (DEGs) identified through DESeq2 and functionally annotated via GO and KEGG enrichment analyses. Results: Moderate light (620 lx) promoted optimal leaf structure by enhancing palisade tissue development and epidermal thickening, while reducing membrane lipid peroxidation. Antioxidant defense capacity was elevated through higher CAT, POD, and SOD activities, alongside increased accumulation of soluble proteins, sugars, and starch. Transcriptomic analysis revealed DEGs enriched in photosynthesis, monoterpenoid biosynthesis, hormone signaling, and glutathione metabolism pathways. Key positive regulators (PHY and HY5) were upregulated, whereas negative regulators (COP1 and PIFs) were suppressed, collectively facilitating chloroplast development and photomorphogenesis. Trend analysis indicated a “down–up” gene expression pattern, with early suppression of stress-responsive genes followed by activation of photosynthetic and metabolic processes. Conclusions: A. kusnezoffii employs a coordinated, multi-level adaptation strategy under moderate light (620 lx), integrating leaf structural optimization, enhanced antioxidant defense, and dynamic transcriptomic reprogramming to maintain energy balance, redox homeostasis, and photomorphogenic flexibility. These findings provide a theoretical foundation for optimizing artificial cultivation and light management of alpine medicinal plants. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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23 pages, 8003 KiB  
Article
Study on Meso-Mechanical Evolution Characteristics and Numerical Simulation of Deep Soft Rock
by Anying Yuan, Hao Huang and Tang Li
Processes 2025, 13(8), 2358; https://doi.org/10.3390/pr13082358 - 24 Jul 2025
Viewed by 285
Abstract
To reveal the meso-mechanical essence of deep rock mass failure and capture precursor information, this study focuses on soft rock failure mechanisms. Based on the discontinuous medium discrete element method (DEM), we employed digital image correlation (DIC) technology, acoustic emission (AE) monitoring, and [...] Read more.
To reveal the meso-mechanical essence of deep rock mass failure and capture precursor information, this study focuses on soft rock failure mechanisms. Based on the discontinuous medium discrete element method (DEM), we employed digital image correlation (DIC) technology, acoustic emission (AE) monitoring, and particle flow code (PFC) numerical simulation to investigate the failure evolution characteristics and AE quantitative representation of soft rocks. Key findings include the following: Localized high-strain zones emerge on specimen surfaces before macroscopic crack visualization, with crack tip positions guiding both high-strain zones and crack propagation directions. Strong force chain evolution exhibits high consistency with the macroscopic stress response—as stress increases and damage progresses, force chains concentrate near macroscopic fracture surfaces, aligning with crack propagation directions, while numerous short force chains coalesce into longer chains. The spatial and temporal distribution characteristics of acoustic emissions were explored, and the damage types were quantitatively characterized, with ring-down counts demonstrating four distinct stages: sporadic, gradual increase, stepwise growth, and surge. Shear failures predominantly occurred along macroscopic fracture surfaces. At the same time, there is a phenomenon of acoustic emission silence in front of the stress peak in the surrounding rock of deep soft rock roadway, as a potential precursor indicator for engineering disaster early warning. These findings provide critical theoretical support for deep engineering disaster prediction. Full article
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23 pages, 8883 KiB  
Article
Venom IMP-L2 from the Ectoparasitoid Scleroderma guani Regulates the IIS/TOR Pathway in Tenebrio molitor
by Wenxiu Wang, Zhiquan Zhang, Xuemin Ren, Chaoyan Wu and Jiaying Zhu
Insects 2025, 16(8), 763; https://doi.org/10.3390/insects16080763 - 24 Jul 2025
Viewed by 420
Abstract
Parasitoid venom significantly influences host physiology and development. Our previous research identified high levels of insulin-binding protein IMP-L2 in the venom of Scleroderma guani. IMP-L2 may inhibit the insulin/insulin-like growth factor signaling (IIS) cascade by competitively binding insulin-like peptides (ILPs) with insulin [...] Read more.
Parasitoid venom significantly influences host physiology and development. Our previous research identified high levels of insulin-binding protein IMP-L2 in the venom of Scleroderma guani. IMP-L2 may inhibit the insulin/insulin-like growth factor signaling (IIS) cascade by competitively binding insulin-like peptides (ILPs) with insulin receptor (InR). However, how to regulate IIS transduction is unclear. We speculate that venom-derived IMP-L2 may bind ILPs to inhibit IIS transduction. Consequently, we investigated the regulation of the IIS/TOR pathway by venom-derived IMP-L2. An expression analysis of IIS/TOR pathway genes across various developmental stages of Tenebrio molitor demonstrated that this pathway governs the entire developmental process. By examining gene expression before and after parasitism, we determined that S. guani predominantly inhibits TOR pathway signaling in T. molitor post-parasitism. Bioinformatics and expression analyses revealed that IMP-L2 is critically involved in Hymenoptera insects, exhibiting high expression in the venom apparatus, and is upregulated in response to S. guani parasitism factors. Additionally, recombinant IMP-L2 was produced via eukaryotic expression. Finally, the recombinant IMP-L2 was found to inhibit the TOR and IIS/TOR signaling pathways at early (6 h) and late (24 h) stages post-injection. Knockdown of IMP-L2 in S. guani parasitized T. molitor pupae, resulting in accelerated death of T. molitor. During parasitism, S. guani may suppress host growth and development by modulating the IIS/TOR signaling pathway through venom-derived IMP-L2, potentially affecting host lifespan. Full article
(This article belongs to the Section Insect Molecular Biology and Genomics)
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14 pages, 1209 KiB  
Article
Investigation of Growth Differentiation Factor 15 as a Prognostic Biomarker for Major Adverse Limb Events in Peripheral Artery Disease
by Ben Li, Farah Shaikh, Houssam Younes, Batool Abuhalimeh, Abdelrahman Zamzam, Rawand Abdin and Mohammad Qadura
J. Clin. Med. 2025, 14(15), 5239; https://doi.org/10.3390/jcm14155239 - 24 Jul 2025
Viewed by 306
Abstract
Background/Objectives: Peripheral artery disease (PAD) impacts more than 200 million individuals globally and leads to mortality and morbidity secondary to progressive limb dysfunction and amputation. However, clinical management of PAD remains suboptimal, in part because of the lack of standardized biomarkers to predict [...] Read more.
Background/Objectives: Peripheral artery disease (PAD) impacts more than 200 million individuals globally and leads to mortality and morbidity secondary to progressive limb dysfunction and amputation. However, clinical management of PAD remains suboptimal, in part because of the lack of standardized biomarkers to predict patient outcomes. Growth differentiation factor 15 (GDF15) is a stress-responsive cytokine that has been studied extensively in cardiovascular disease, but its investigation in PAD remains limited. This study aimed to use explainable statistical and machine learning methods to assess the prognostic value of GDF15 for limb outcomes in patients with PAD. Methods: This prognostic investigation was carried out using a prospectively enrolled cohort comprising 454 patients diagnosed with PAD. At baseline, plasma GDF15 levels were measured using a validated multiplex immunoassay. Participants were monitored over a two-year period to assess the occurrence of major adverse limb events (MALE), a composite outcome encompassing major lower extremity amputation, need for open/endovascular revascularization, or acute limb ischemia. An Extreme Gradient Boosting (XGBoost) model was trained to predict 2-year MALE using 10-fold cross-validation, incorporating GDF15 levels along with baseline variables. Model performance was primarily evaluated using the area under the receiver operating characteristic curve (AUROC). Secondary model evaluation metrics were accuracy, sensitivity, specificity, negative predictive value (NPV), and positive predictive value (PPV). Prediction histogram plots were generated to assess the ability of the model to discriminate between patients who develop vs. do not develop 2-year MALE. For model interpretability, SHapley Additive exPlanations (SHAP) analysis was performed to evaluate the relative contribution of each predictor to model outputs. Results: The mean age of the cohort was 71 (SD 10) years, with 31% (n = 139) being female. Over the two-year follow-up period, 157 patients (34.6%) experienced MALE. The XGBoost model incorporating plasma GDF15 levels and demographic/clinical features achieved excellent performance for predicting 2-year MALE in PAD patients: AUROC 0.84, accuracy 83.5%, sensitivity 83.6%, specificity 83.7%, PPV 87.3%, and NPV 86.2%. The prediction probability histogram for the XGBoost model demonstrated clear separation for patients who developed vs. did not develop 2-year MALE, indicating strong discrimination ability. SHAP analysis showed that GDF15 was the strongest predictive feature for 2-year MALE, followed by age, smoking status, and other cardiovascular comorbidities, highlighting its clinical relevance. Conclusions: Using explainable statistical and machine learning methods, we demonstrated that plasma GDF15 levels have important prognostic value for 2-year MALE in patients with PAD. By integrating clinical variables with GDF15 levels, our machine learning model can support early identification of PAD patients at elevated risk for adverse limb events, facilitating timely referral to vascular specialists and aiding in decisions regarding the aggressiveness of medical/surgical treatment. This precision medicine approach based on a biomarker-guided prognostication algorithm offers a promising strategy for improving limb outcomes in individuals with PAD. Full article
(This article belongs to the Special Issue The Role of Biomarkers in Cardiovascular Diseases)
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31 pages, 4937 KiB  
Article
Proximal LiDAR Sensing for Monitoring of Vegetative Growth in Rice at Different Growing Stages
by Md Rejaul Karim, Md Nasim Reza, Shahriar Ahmed, Kyu-Ho Lee, Joonjea Sung and Sun-Ok Chung
Agriculture 2025, 15(15), 1579; https://doi.org/10.3390/agriculture15151579 - 23 Jul 2025
Viewed by 270
Abstract
Precise monitoring of vegetative growth is essential for assessing crop responses to environmental changes. Conventional methods of geometric characterization of plants such as RGB imaging, multispectral sensing, and manual measurements often lack precision or scalability for growth monitoring of rice. LiDAR offers high-resolution, [...] Read more.
Precise monitoring of vegetative growth is essential for assessing crop responses to environmental changes. Conventional methods of geometric characterization of plants such as RGB imaging, multispectral sensing, and manual measurements often lack precision or scalability for growth monitoring of rice. LiDAR offers high-resolution, non-destructive 3D canopy characterization, yet applications in rice cultivation across different growth stages remain underexplored, while LiDAR has shown success in other crops such as vineyards. This study addresses that gap by using LiDAR for geometric characterization of rice plants at early, middle, and late growth stages. The objective of this study was to characterize rice plant geometry such as plant height, canopy volume, row distance, and plant spacing using the proximal LiDAR sensing technique at three different growth stages. A commercial LiDAR sensor (model: VPL−16, Velodyne Lidar, San Jose, CA, USA) mounted on a wheeled aluminum frame for data collection, preprocessing, visualization, and geometric feature characterization using a commercial software solution, Python (version 3.11.5), and a custom algorithm. Manual measurements compared with the LiDAR 3D point cloud data measurements, demonstrating high precision in estimating plant geometric characteristics. LiDAR-estimated plant height, canopy volume, row distance, and spacing were 0.5 ± 0.1 m, 0.7 ± 0.05 m3, 0.3 ± 0.00 m, and 0.2 ± 0.001 m at the early stage; 0.93 ± 0.13 m, 1.30 ± 0.12 m3, 0.32 ± 0.01 m, and 0.19 ± 0.01 m at the middle stage; and 0.99 ± 0.06 m, 1.25 ± 0.13 m3, 0.38 ± 0.03 m, and 0.10 ± 0.01 m at the late growth stage. These measurements closely matched manual observations across three stages. RMSE values ranged from 0.01 to 0.06 m and r2 values ranged from 0.86 to 0.98 across parameters, confirming the high accuracy and reliability of proximal LiDAR sensing under field conditions. Although precision was achieved across growth stages, complex canopy structures under field conditions posed segmentation challenges. Further advances in point cloud filtering and classification are required to reliably capture such variability. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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17 pages, 4524 KiB  
Article
Growth and Water-Use Efficiency of European Beech and Turkey Oak at Low-Elevation Site
by Negar Rezaie, Ettore D’Andrea, Marco Ciolfi, Enrico Brugnoli and Silvia Portarena
Forests 2025, 16(8), 1210; https://doi.org/10.3390/f16081210 - 23 Jul 2025
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Abstract
In Italy, beech and Turkey oak are among the most widespread tree species, thriving across various climatic zones. However, rising temperatures and prolonged droughts significantly affect their physiological performance and growth dynamics. To assess their long-term responses to climate change, mature beech and [...] Read more.
In Italy, beech and Turkey oak are among the most widespread tree species, thriving across various climatic zones. However, rising temperatures and prolonged droughts significantly affect their physiological performance and growth dynamics. To assess their long-term responses to climate change, mature beech and Turkey oak trees were studied in Central Italy at an elevation of 450 m. Using dendrochronological and stable isotope analyses (1981–2020), their growth patterns and physiological adaptations were evaluated. Beech exhibited a higher growth rate, with a basal area increment (BAI) of 17.1 ± 1.1 cm2 year−1, compared to Turkey oak, showing a BAI of 12.7 ± 0.96 cm2 year−1. Both species actively responded to increasing atmospheric CO2 levels. Additionally, spring and the previous summer’s climatic conditions played a key role in growth, while summer temperature and precipitation influenced carbon discrimination. For beech, correlations between BAI and iWUE (intrinsic water efficiency, defined as the ratio between photosynthesis and stomatal conductance) were initially weak and not statistically significant. However, the correlation became significant, strengthening steadily into the early 2000s, likely related to thinning of the beech trees. For Turkey oak, the correlation was already significant and strong from the beginning of the analysis period (1981), persisting until the late 1990s. Our findings suggest that both species actively adjust their iWUE in response to an increasing atmospheric CO2 concentration. However, while Turkey oak’s iWUE and BAI relationship remains unaffected by the likely thinning, beech benefits from reduced competition for light, nutrients, and water. Despite climate change’s impact on marginal populations, microclimatic conditions allow beech to outperform Turkey oak, a species typically better suited to drier climates. Full article
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