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Taxonomy

Taxonomy is an international, peer-reviewed, open access journal published quarterly online by MDPI.
It covers the conception, naming, and classification of groups of organisms, including but not limited to animals, plants, viruses, and microorganisms.
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All Articles (234)

Marasmius neooreades sp. nov. from Japan is described. This species produces fleshy, medium-sized basidiomata that are macromorphologically similar to M. oreades, with a pileus ranging from wheat-colored to dark brown and a tough stipe covered with brownish tomentose squamules. The gill edges bear cheilocystidia that are clavate to diverticulate. The pileipellis is hymeniform and composed of Globulares-type elements containing brown pigments. The species typically occurs gregariously in grasslands and occasionally forms fairy rings. Phylogenetic analyses based on ITS and LSU sequences indicated that M. neooreades forms a well-supported, independent clade distinct from previously described species of Marasmius. In addition, a combination of morphological characters clearly differentiates this species from all described taxa. An illustrated description and the phylogenetic placement of the new species are provided.

11 March 2026

Phylogenetic placement of Marasmius neooreades based on the ITS dataset using IQ-TREE. SH-aLRT support (X ≥ 90%), aBayes support (Y ≥ 0.95) and ultrafast bootstrap support (Z ≥ 90%) are indicated above or below the branches as X/Y/Z.

Recent genomic phylogenies have generated new robust classifications of actinopterygian fishes, making possible greater nomenclatural stability, but genus-level classifications of groups like the diverse catfish subfamily Trichomycterinae are still unclear, containing ill-defined paraphyletic taxa. The focus of the present study is the Trichomycterus Lineage (TL), a clade with great morphological diversity, containing about 170 species widely distributed in South America, occurring in the most important biodiversity hotspots of the world, such as the Atlantic Forest, Cerrado, and the Tropical Andes. Most species are small, but at least one reaches about 400 mm of total length, being used as food and depicted in pre-Hispanic Andean ceramics. Based on a comparative morphological analysis, mainly using osteological characters, supported by concordant genomic phylogenies, a new classification at the genus level is here provided. Many morphological features delimiting TL genera seem to be related to ecological adaptations. Nine genera are here recognised of which five are new. Recognition of the new genera will allow easier descriptions of new species and consequently better biodiversity estimates.

4 March 2026

Hyoid arch, middle and left portions, ventral view, of the following: (A) Cambeva chrysornata; (B) Paracambeva mate; (C) Scleronema macanuda; (D) Trichomycterus nigricans; (E) Mauri megantoni. Larger stippling represents cartilage. BR1–9: branchiostegal rays 1–9. Arrow indicates the curved expansion in the posterior region of the posterior ceratohyal.

New Perspectives in Auricularia Bull. (Auriculariales, Basidiomycota) in Colombia, with the Description of a New Species

  • Laura Ximena Castillo-Balaguera,
  • María Paula Herrera-Sánchez and
  • Cristian Zambrano-Forero
  • + 3 authors

The genus Auricularia holds significant ecological importance due to its role in wood decaying and notable economic value as both an edible and medicinal resource. This study investigates the diversity of Auricularia species in Colombian Andes using an integrative approach. Species identification was based on macromorphological and micromorphological characteristics, alongside molecular analyses employing ITS and LSU markers. A total of 184 sequences of 81 specimens and 30 species were used to construct a phylogenetic tree including RPB2 marker sequences taken from GenBank. The results revealed six Auricularia species in the Colombian Andes: A. subglabra, A. cornea, A. fuscosuccinea, A. nigricans, A. brasiliana, and the newly described A. ibaguensis. This study provides morphological descriptions, distribution records, and interspecific distinctions, aligning these taxa with four out of the five recognized Auricularia species complexes. Novel sequences deposited in GenBank enhance taxonomic resolution, particularly within the A. cornea complex. These findings contribute new insights into the taxonomy of Auricularia in the Colombian Andes and emphasize the need for further research on Neotropical species, which may show significant differences from taxa in other biogeographic regions.

2 March 2026

Sample collection sites located in the Colombian Andes. The map was generated using ArcGIS version 10.8 (ESRI, Redlands, CA, USA). Reproduced with permission of the author. Alvaro Alexander Dávila-Giraldo.

Astigmata is a diverse lineage of mites with significant ecological, medical, and economic importance, yet higher-level relationships within the group remain contentious due to incongruent morphological and molecular data. Here, we integrate multigene data with comparative morphology and ecological traits to reassess phylogenetic relationships, with a focus on the newly described family Lycoglyphidae fam. nov. associated with puffball fungi. Phylogenetic analyses recover Lycoglyphidae within a well-supported cluster—the AR cluster—comprising Acaridae sensu novo, Rhizoglyphidae sensu novo, and several additional related lineages. Within this framework, previously unrecognized lineages such as Pontoppidaniidae (intertidal seaweed habitats) and Cerophagidae (bee-associated) are supported as monophyletic, showing ecological conservatism. Our phylogeny indicates that mating position is phylogenetically structured, with retroconjugate mating prevalent in the AR cluster (except Histiostomatoidea) and many other lineages, while proconjugate mating is present only in two lineages, Hemisarcoptoidea+Glycyphagidae and Rosensteiniidae+Aeroglyphidae. Finally, to facilitate identification and future research, we provide a taxonomic description of new taxa (Lycoglyphidae with Lycoglyphus gen. nov., Obelacarus gen. nov., and Viedebanttia) and a comprehensive key to the families and genera of Acaroidea based on both adults and deutonymphs. Our results clarify some higher-level relationships within Astigmata, indicate the importance of integrating molecular, morphological, and ecological evidence, and provide a practical resource for identification and comparative studies.

20 February 2026

Maximum likelihood tree of astigmatid mites (Astigmata) and outgroups (Oribatida s. str.) inferred in IQ-TREE. The input phylogenetic matrix had 619 taxa and alignments of six genes (6861 sites total aligned): 18S (1675 nt), 28S (3379 nt), EF1A (363 aa), SRP54 (456 aa), HSP70 (569 aa), and COX1 (419 aa). Missing data: 6.1%. Following model selection and partition merging (-m MFP+MERGE), IQ-TREE used a three-partition scheme: TIM2+F+R7 for 18S, GTR+F+I+R8 for 28S, and Q.INSECT+R6/I for all protein-coding genes. This partition scheme was then used in the downstream maximum likelihood phylogenetic analysis with 1000 ultrafast bootstrap replicates and SH-aLRT branch tests to assess node support. A high-resolution tree is also available in Supplementary Materials (Figure S1).

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Taxonomy - ISSN 2673-6500