Advances in Plant and Food Metabolomics

A special issue of Plants (ISSN 2223-7747). This special issue belongs to the section "Plant Nutrition".

Deadline for manuscript submissions: closed (31 December 2024) | Viewed by 5354

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Guest Editor
Department for Sustainable Food Processes, Università Cattolica Del Sacro Cuore, 29122 Piacenza, Italy
Interests: plant science; food science; metabolomics; proteomics; biochemistry
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Guest Editor
Department for Sustainable Food Processes, Università Cattolica Del Sacro Cuore, 29122 Piacenza, Italy
Interests: Foodomics; Metabolomics; Plant Science; Chemometrics

Special Issue Information

Dear Colleagues,

Metabolomics, a rapidly evolving field, plays a pivotal role in understanding the intricate metabolic networks of plants and food systems. This Special Issue aims to explore the innovative applications of metabolomics and related chemometrics in unraveling complex metabolomic data, thereby advancing our comprehension of plant metabolism and food quality.

Contributions to this issue encompass a diverse array of topics, including but not limited to:

  • Multivariate Data Analysis (MVDA): Articles delve into the utilization of MVDA techniques such as principal component analysis (PCA), partial least squares-discriminant analysis (PLS-DA), and hierarchical clustering analysis (HCA) to discern patterns, classify samples, and identify biomarkers in plant and food metabolomics datasets.
  • Machine Learning and Pattern Recognition: Novel applications of machine learning algorithms, including support vector machines (SVM), random forests (RF), and neural networks, are explored for predictive modeling, feature selection, and classification tasks in metabolomics studies.
  • Data Fusion and Integration: Researchers present methodologies for integrating multiple omics datasets (e.g., genomics, proteomics) with metabolomics data using chemometric approaches to achieve a holistic understanding of plant metabolic pathways and food quality attributes.
  • Quantitative Structure-Activity Relationship (QSAR) Modeling: Studies investigate developing QSAR models to predict the biological activities of phytochemicals and food components, facilitating the discovery of bioactive compounds with potential health benefits.
  • Metabolite Annotation and Identification: Innovative strategies employing cheminformatics tools, spectral databases, and statistical algorithms are proposed for accurate metabolite annotation and identification, enhancing the reliability of metabolomics studies.

This Special Issue, by compiling cutting-edge research, endeavors to foster interdisciplinary collaborations, accelerate methodological advancements, and contribute to elucidating complex metabolic processes in plants and assessing food quality parameters.

Dr. Luigi Lucini
Dr. Leilei Zhang
Dr. Pascual García-Pérez
Guest Editors

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Keywords

  • untargeted analysis
  • biomarker discovery
  • metabolic profiling
  • data fusion techniques
  • cheminformatics
  • quality markers
  • fingerprinting

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Published Papers (3 papers)

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Research

15 pages, 17991 KiB  
Article
Non-Targeted Metabolome Analysis with Low-Dose Selenate-Treated Arabidopsis
by Hongqiao Li, Tetsuya Mori, Rintaro Moriyama, Moeka Fujita, Genki Hatanaka, Naoki Shiotsuka, Ryota Hosomi and Akiko Maruyama-Nakashita
Plants 2025, 14(3), 322; https://doi.org/10.3390/plants14030322 - 22 Jan 2025
Viewed by 882
Abstract
Selenate, the most common form of selenium (Se) in soil environments, is beneficial for higher plants. Selenate is similar to sulfate in terms of the structure and the manner of assimilation by plants, which involves the reduction of selenate to selenide and the [...] Read more.
Selenate, the most common form of selenium (Se) in soil environments, is beneficial for higher plants. Selenate is similar to sulfate in terms of the structure and the manner of assimilation by plants, which involves the reduction of selenate to selenide and the replacement of an S moiety in the organic compounds such as amino acids. The nonspecific incorporation of seleno-amino acids into proteins induce Se toxicity in plants. Selenate alters the plant metabolism, particularly the S metabolism, which is comparable to the responses to S deficiency (−S). However, previous analyses involved high concentrations of selenate, and the effects of lower selenate doses have not been elucidated. In this study, we analyzed the metabolic changes induced by selenate treatment through a non-targeted metabolome analysis and found that 2 µM of selenate decreased the S assimilates and amino acids, and increased the flavonoids, while the glutathione levels were maintained. The results suggest that the decrease in amino acid levels, which is not detected under −S, along with the disruptions in S assimilation, amino acid biosynthesis pathways, and the energy metabolism, present the primary metabolic influences of selenate. These results suggest that selenate targets the energy metabolism and S assimilation first, and induces oxidative stress mitigation, represented by flavonoid accumulation, as a key adaptive response, providing a novel, possible mechanism in plant stress adaptation. Full article
(This article belongs to the Special Issue Advances in Plant and Food Metabolomics)
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20 pages, 2728 KiB  
Article
Ziziphus mauritiana Lam. Bark and Leaves: Extraction, Phytochemical Composition, In Vitro Bioassays and In Silico Studies
by Nilofar, Kouadio Ibrahime Sinan, Stefano Dall’Acqua, Stefania Sut, Abdullahi Ibrahim Uba, Ouattara Katinan Etienne, Claudio Ferrante, Jamil Ahmad and Gokhan Zengin
Plants 2024, 13(16), 2195; https://doi.org/10.3390/plants13162195 - 8 Aug 2024
Cited by 4 | Viewed by 2904
Abstract
In this work, homogenizer-assisted extraction (HAE) and maceration (MAE) were applied on leaves and bark of Ziziphus mauritiana using water and methanol (MeOH) as solvents. HAE and MAE extracts were compared through liquid chromatography coupled with mass spectrometry (LC-MS) and evaluating the antioxidant [...] Read more.
In this work, homogenizer-assisted extraction (HAE) and maceration (MAE) were applied on leaves and bark of Ziziphus mauritiana using water and methanol (MeOH) as solvents. HAE and MAE extracts were compared through liquid chromatography coupled with mass spectrometry (LC-MS) and evaluating the antioxidant activity, and enzyme inhibition against acetylcholinesterase (AChE), butrylcholinesterase (BChE), tyrosinase, α-amylase, and α-glucosidase. Considering the phytochemical contents and the bioassays results, the HAE extracts resulted favorably with larger content of phenolics and higher antioxidant activity. The MeOH extracts displayed the highest α-amylase inhibitory activity, with HAE MeOH leaf extract leading at 0.78 mmol acarbose equivalent (ACAE)/g. In conclusion, the study highlights that HAE can increase the extraction of phenolic and flavonoid from Z. mauritiana plant materials compared to maceration. Further research could explore the potential therapeutic applications of Z. mauritiana extracts, especially HAE MeOH leaf extracts, for their notable antioxidant and enzyme inhibitory activities, facilitating the way for the development of novel pharmaceutical interventions. Full article
(This article belongs to the Special Issue Advances in Plant and Food Metabolomics)
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16 pages, 2465 KiB  
Article
Metabolomic Profiles and Biopharmaceutical Properties of Petrosimonia brachiata and P. nigdeensis from Turkey
by Marco A. De Gregorio, Leilei Zhang, Mohamad Fawzi Mahomoodally, Gokhan Zengin, Sharmeen Jugreet, Evren Yildiztugay, Andrea Fiorini and Luigi Lucini
Plants 2024, 13(15), 2073; https://doi.org/10.3390/plants13152073 - 26 Jul 2024
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Abstract
Halophytic plants possess a huge range of active constituents and medicinal benefits. In this study, extracts (water, ethanol, ethyl acetate, dichloromethane, and n-hexane) of two halophytes of the genus Petrosimonia (P. brachiata and P. nigdeensis) were investigated for their phytochemical profiles [...] Read more.
Halophytic plants possess a huge range of active constituents and medicinal benefits. In this study, extracts (water, ethanol, ethyl acetate, dichloromethane, and n-hexane) of two halophytes of the genus Petrosimonia (P. brachiata and P. nigdeensis) were investigated for their phytochemical profiles and pharmacological properties. The phytochemical profiles of both species were investigated using an untargeted metabolomics approach based on high-resolution mass spectrometry. The two species show different polyphenolic profiles and these are influenced by the different extraction solvents used. The same extracts were used for different bioactivity assays. The results show that all extracts yielded total flavonoid and phenolic contents of 11.14–24.22 mg GAE/g and 3.15–22.03 mg RE/g, respectively. While extracts of both species demonstrated a radical scavenging ability in the ABTS assay (16.12–98.02 mg TE/g), only the polar and moderately polar extracts (water, ethanol, and ethyl acetate) showed scavenging potential in the DPPH assay (4.74–16.55 mg TE/g). A reducing potential was also displayed by all extracts in the CUPRAC and FRAP assays (26.02–80.35 mg TE/g and 31.70–67.69 mg TE/g, respectively). The total antioxidant capacity of the extracts ranged from 0.24 to 2.17 mmol TE/g, and the metal chelating activity ranged from 14.74 to 33.80 mg EDTAE/g. The water extracts possessed a higher metal chelating power than the other extracts. All extracts acted as inhibitors of acetylcholinesterase (0.16–3.85 mg GALAE/g) and amylase (0.11–1.28 mmol ACAE/g). Moreover, apart from the water extracts, the other extracts also showed anti-butyrylcholinesterase activity (0.73–2.86 mg GALAE/g), as well as anti-tyrosinase (36.74–61.40 mg KAE/g) and anti-glucosidase (2.37–2.73 mmol ACAE/g) potential. In general, the water extracts were found to be weak inhibitors of the tested enzymes, while the ethanol extracts mostly showed an inhibitory effect. The obtained findings revealed the antioxidant and enzyme inhibitory properties of these two species and demonstrated that the solvent type used affected the pharmacological properties of the extracts and hence, can be useful to further investigate the active constituents yielded in the extracts and understand the mechanisms involved. Full article
(This article belongs to the Special Issue Advances in Plant and Food Metabolomics)
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