Bioremediation of Agricultural Contaminants: Microbial and Plant–Microbe Strategies

A special issue of Plants (ISSN 2223-7747). This special issue belongs to the section "Plant–Soil Interactions".

Deadline for manuscript submissions: 31 March 2026 | Viewed by 19

Special Issue Editors


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Guest Editor
Program of Agricultural Microbiology, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil
Interests: agronomy; soil microbiology; pesticide environmental behavior; microbial ecology; composing; plant growth-promoting bacteria; biological control; sewage treatment and agricultural use; regenerative agriculture; biological nitrogen fixation; pesticide biod
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Guest Editor
Departamento de Ingeniería Bioquímica, Tecnológico Nacional de México/I.T. Celaya, Celaya, Mexico
Interests: microorganisms
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Special Issue Information

Dear Colleagues,

The contamination of agricultural soils due to the excessive use of pesticides, fertilizers, and other pollutants poses a serious environmental risk, affecting soil health, water quality, and biodiversity, as well as food security. Bioremediation, which is a sustainable approach, uses microbial and plant–microbe interactions to efficiently detoxify contaminated environments. Microorganisms such as archaea, bacteria, fungi, and algae can break down pollutants, transforming harmful chemicals into less-toxic or non-toxic forms. Among microbial strategies, biodegradation, biosorption, and bioaccumulation are key processes used in contaminant removal. In addition, plant-assisted bioremediation, or phytoremediation, enhances pollutant decomposition by using plants and their associated microbes to immobilize, absorb, and degrade toxins. Rhizoremediation, a subset of phytoremediation, relies on root-associated bacteria to accelerate pollutant degradation. Endophytic bacteria and mycorrhizal fungi further enhance the efficiency of this process by improving soil structure and promoting plant resilience. The application of bioaugmentation and biostimulation can optimize microbial activity, ensuring a faster remediation process. The synergy between plants and microbes is a promising approach for the mitigation of pesticide residues, heavy metals, and other organic pollutants (antibiotic residues). Recent advances explore genetically modified microbes and synthetic biology approaches to enhance biodegradation capabilities. Although bioremediation is environmentally friendly and cost-effective, challenges such as variability in environmental conditions and microbial viability require further research. Therefore, the objective of this Special Issue is to explore innovative research that contributes to the field of bioremediation, focusing on the interactions between microbial communities and plants, as well as other biotechnologies to mitigate the impact of agro-industrial residues on soil.

Prof. Dr. Adijailton José de Souza
Prof. Dr. Gustavo Santoyo
Dr. Ma. Del Carmen Orozco-Mosqueda
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Plants is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • bioremediation
  • soil quality
  • food security
  • biotechnology
  • microbial community
  • microbe–plant interaction
  • regenerative agriculture strategies

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This special issue is now open for submission.
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