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Computational Approaches: Drug Discovery and Design in Medicinal Chemistry and Bioinformatics II

This special issue belongs to the section “Medicinal Chemistry“.

Special Issue Information

Dear Colleagues,

We are pleased to inform you that Molecules will be launch the second part of the Special Issue “Computational Approaches: Drug Discovery and Design in Medicinal Chemistry and Bioinformatics“ https://www.mdpi.com/journal/molecules/special_issues/comput_appr_drug_dis_des_med_chem_bio.

Understanding ligand–receptor interaction is a key feature in all research fields related to drug design and discovery. This issue will focus on computational approaches that can improve the development of in silico methodologies, a primary need in pharmaceutical sciences. The ongoing and widespread discovery of new biological targets suitable for therapeutic intervention should be paralleled by a high and fast development of newly discovered ligands (potential drugs) or the repurposing of an old drug for the treatment of new diseases.

In this light, all computational approaches, such as docking, induced-fit docking, molecular dynamics simulations, free energy calculations, and reverse modeling, represent efficient tools to obtain insights into structure–function relationships for small molecules and/or natural compounds, also including ligand-based approaches, such as molecular similarity fingerprints, shape methods, pharmacophore modeling, and QSAR, extensively used in hit/lead identification and optimization.

Let us also not forget that drug design and the development process strive to predict the metabolic fate of a drug candidate to establish a relationship between the pharmacodynamics and pharmacokinetics and to highlight the potential toxicity of the drug candidate. In recent years, the improvement of in silico approaches has allowed researchers to obtain more reliable data. As such, this Special Issue welcomes submissions from researchers in the field of computational drug discovery and design, including original research and review articles related to pharmaceutical sciences, pharmacology, chemical biology, and bioinformatics.

Papers combining both experimental and computational studies are also encouraged.

Prof. Dr. Anna Maria Almerico
Prof. Dr. Marco Tutone
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 250 words) can be sent to the Editorial Office for assessment.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Molecules is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • QSAR and 3D-QSAR
  • Unbiased and biased molecular dynamics
  • Pharmacophore modeling
  • Reverse modeling
  • Ab initio calculations
  • Protein–protein interactions
  • Free energy profiling
  • Modeling of nucleic acids (mRNA, rRNA, tRNA)
  • Molecular docking
  • Virtual screening
  • Multitarget approaches
  • ADMET prediction
  • Similarity analysis
  • Computational approaches applied to natural compounds

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Molecules - ISSN 1420-3049