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Diagnostics

Diagnostics is an international, peer-reviewed, open access journal on medical diagnosis published semimonthly online by MDPI.
The British Neuro-Oncology Society (BNOS), the International Society for Infectious Diseases in Obstetrics and Gynaecology (ISIDOG) and the Swiss Union of Laboratory Medicine (SULM) are affiliated with Diagnostics and their members receive a discount on the article processing charges.
Indexed in PubMed | Quartile Ranking JCR - Q1 (Medicine, General and Internal)

All Articles (16,657)

Background/Objectives: Sarcopenia and muscle composition have emerged as significant indicators in the fields of musculoskeletal and metabolic research. The objective of this study was to develop and validate a fully automated, deep learning-based method for segmenting thigh muscles into three functional groups (extensor, flexor, and adductor) using non-contrast computed tomography (CT) images and to quantitatively evaluate the thigh muscles. Methods: In order to ascertain the most efficacious architecture for automated thigh muscle segmentation, three deep learning models (Dense U-Net, MANet, and SegFormer) were implemented and subsequently compared. Each model was trained using 136 manually labeled non-contrast thigh CT scans and externally validated with 40 scans from another institution. The performance of the segmentation was evaluated using the Dice similarity coefficient (DSC), sensitivity, specificity, and accuracy. Quantitative indices, including total muscle volume, lean muscle volume, and intra-/intermuscular fat volumes, were automatically calculated and compared with manual measurements. Results: All three models exhibited high segmentation accuracy, with the mean DSC exceeding 96%. The MANet model demonstrated optimal performance in internal validation, while the SegFormer model exhibited superior volumetric agreement in external validation, as indicated by an intraclass correlation coefficient (ICC) of at least 0.995 and a p-value less than 0.01. Conclusions: A CT-based deep learning framework enables accurate and reproducible segmentation of functional thigh muscle groups. A comparative evaluation of convolutional attention- and transformer-based architectures supports the feasibility of CT-based quantitative muscle assessment for sarcopenia and musculoskeletal research.

7 November 2025

Pre-processing pipeline for thigh computed tomography (CT) images. Thresholding at −500 Hounsfield units (HU) was applied to create a binary mask separating air from other regions. The bilateral thighs were automatically identified, cropped, zero-padded to a uniform size, and horizontally flipped for data augmentation.

Salivary Biomarker Profile in Periodontal Diseases: A Cross-Sectional Study on Leptin, Adiponectin, and Calprotectin

  • Ali Batuhan Bayırlı,
  • Mehmetcan Uytun and
  • Fulden Cantaş Türkiş
  • + 2 authors

Background/Objectives: This study aimed to evaluate salivary leptin, adiponectin, and calprotectin levels and to investigate the associations among these biomarkers in periodontally healthy individuals, as well as in patients with gingivitis and periodontitis. Methods: A total of 165 participants were included: 55 periodontally healthy individuals, 55 with gingivitis, and 55 with periodontitis. Unstimulated saliva was collected via passive drool, and salivary leptin, adiponectin, and calprotectin levels were biochemically quantified using enzyme-linked immunosorbent assay. Results: Salivary leptin levels were significantly lower in the periodontally healthy group than those in the gingivitis and periodontitis groups, whereas adiponectin levels were reduced in the periodontitis group than in the periodontally healthy and gingivitis groups (p < 0.05). Salivary calprotectin levels differed significantly among groups, highest in the periodontitis group, followed by the gingivitis and periodontally healthy groups (p < 0.05). Salivary leptin and calprotectin levels demonstrated significant positive correlations with all clinical periodontal parameters, while adiponectin levels were negatively correlated (p < 0.05). Receiver operating characteristic and logistic regression analyses identified salivary leptin, calprotectin, and adiponectin levels as significant biomarkers for distinguishing periodontal health, gingivitis, and periodontitis (p < 0.05). Conclusions: These findings suggest salivary leptin, calprotectin, and adiponectin may serve as biomarkers and potential risk predictors of periodontal disease.

7 November 2025

Correlation analysis among clinical, biochemical, and anthropometric variables. Spearman’s correlation coefficients are visualized using a color gradient, with red indicating strong positive correlations, while blue suggests strong negative correlations. Only statistically significant correlations (p &lt; 0.05) are considered for the interpretation. For clarity, only the lower triangle of the symmetrical matrix is presented. CAL, clinical attachment loss; BOP, bleeding on probing; GI, gingival index; PPD, probing pocket depth; PI, plaque index.

Background: Intellectual disability (ID) is a heterogeneous condition caused by diverse genetic factors, including single-nucleotide variants (SNVs) and copy number variants (CNVs). Whole-exome sequencing (WES) and clinical exome sequencing (CES) have become essential tools for identifying pathogenic variants; however, their relative diagnostic performance in ID has not been fully characterized. Methods: Children diagnosed with ID or related neurodevelopmental disorders underwent WES or CES. Identified variants were classified according to ACMG/AMP and ClinGen guidelines, with segregation analysis performed when parental samples were available. Diagnostic yields were compared across demographic, prenatal, and phenotypic subgroups. A multidimensional semi-quantitative scoring system encompassing 15 clinical domains (e.g., age at onset, neuro-motor function, seizures, MRI findings, vision, and dysmorphic features) was developed. Z-scores were calculated for each parameter, followed by hierarchical cluster analysis (HCA) and correlation modeling to define genotype–phenotype associations and pathway-level clustering. Results: A broad spectrum of pathogenic and likely pathogenic variants across multiple genes and biological pathways was identified in our study. CNV-associated cases frequently exhibited prenatal anomalies or multisystem phenotypes associated with large chromosomal rearrangements. Monogenic variants and their corresponding phenotypic profiles were identified through clinical exome sequencing (CES) and whole-exome sequencing (WES). Phenotypic HCA based on Z-scores revealed three major biological groups of patients with coherent genotype–phenotype relationships: Group 1, severe multisystem neurodevelopmental disorders dominated by transcriptional and RNA-processing genes (POLR1C, TCF4, HNRNPU, NIPBL, ACTG1); Group 2, intermediate epileptic and metabolic forms associated with ion-channel and excitability-related genes (SCN2A, PAH, IQSEC2, GNPAT); and Group 3, milder or focal neurodevelopmental phenotypes involving myelination and signaling-related genes (NKX6-2, PLP1, PGAP3, SMAD6, ATP1A3). Gene distribution significantly differed among these biological categories (χ2 = 54.566, df = 34, p = 0.0141), confirming non-random, biologically consistent grouping. Higher Z-scores correlated with earlier onset and greater neurological severity, underscoring the clinical relevance of the multidimensional analytical framework. Conclusions: This study highlights the genetic complexity and clinical heterogeneity of intellectual disability and demonstrates the superior diagnostic resolution of WES and CES. Integrating multidimensional phenotypic profiling with genomic analysis enhances genotype–phenotype integration and enables data-driven phenotype stratification and pathway-based re-analysis. This combined diagnostic and analytical framework offers a more comprehensive approach to diagnosing monogenic ID and provides a foundation for future predictive and functional studies.

7 November 2025

Workflow of genetic testing for patients with intellectual disability (ID) and/or autism spectrum disorder (ASD): Patients meeting the inclusion and exclusion criteria for ID/ASD underwent a stepwise diagnostic workflow. Tier 1 (blue): Cytogenetic and targeted testing, including karyotype analysis and FMR1 CGG repeat expansion testing to detect Fragile X syndrome and gray-zone alleles. Tier 2 (green): Exome-based sequencing, using either whole-exome sequencing (WES) or clinical exome sequencing (CES), with detected variants assessed for pathogenicity. Tier 3 (orange): Confirmation and reporting, in which pathogenic or likely pathogenic variants were validated using orthogonal methods—Sanger sequencing for SNVs/indels and CNVs—followed by interpretation according to ACMG/AMP/ClinGen guidelines and clinical correlation with genetic counseling. For patients with negative findings, re-analysis or additional testing (e.g., chromosomal microarray, methylation analysis, trio sequencing, or long-read sequencing) was recommended.

Background: Iodinated contrast agents are widely used in computed tomography (CT) imaging; however, they can cause adverse drug reactions (ADRs) ranging from mild hypersensitivity to severe anaphylaxis. While several clinical risk factors have been identified, large–scale studies incorporating environmental variables remain limited. This study aimed to assess the prevalence and predictors of contrast agent-related ADRs over a 10-year period. Methods: We retrospectively analyzed 221,962 adult outpatients who underwent contrast-enhanced CT between January 2014 and December 2023 at a single tertiary center: Patient characteristics, clinical conditions (e.g., hypertension, allergy history), contrast agent types, premedication status, seasonal trends, temperature, and humidity were examined. ADRs were categorized as mild, moderate, or severe based on American College of Radiology (ACR) guidelines. Logistic regression was used to identify independent predictors. Results: The overall prevalence of ADRs was 0.64% (1423 cases). ADRs were more frequent in females, younger patients, and those receiving premedication. Seasonal and environmental patterns were evident: higher ADR rates occurred in summer and autumn, with positive correlations to ambient temperature and humidity. Among contrast agents, Ioversol (1.4%) and Iomeprol (1.2%) showed the highest ADR rates. The prevalence of mild ADRs increased in the post–COVID-19 period, while that of moderate reactions declined. Conclusions: This real–world study identified multiple clinical and environmental factors associated with ADRs to iodinated contrast agents in CT imaging. The findings suggest the importance of individualized risk assessment and the consideration of environmental factors when planning contrast administration.

7 November 2025

Annual prevalence of contrast agent-related ADRs from 2014 to 2023. Bars indicate the mean prevalence (%) for each year and error bars indicate 95% confidence intervals calculated using the Wilson method. Values are presented as number (percentage). Abbreviation: ADR, adverse drug reaction.

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Diagnostics - ISSN 2075-4418