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Cells

Cells is an international, peer-reviewed, open access journal on cell biology, molecular biology, and biophysics, published semimonthly online by MDPI.
The Nordic Autophagy Society (NAS), the Spanish Society of Hematology and Hemotherapy (SEHH) and the International Cell Death Society (ICDS) are affiliated with Cells and their members receive discounts on the article processing charges.
Indexed in PubMed | Quartile Ranking JCR - Q2 (Cell Biology)

All Articles (20,040)

Decoding Glioblastoma Through Liquid Biopsy: Molecular Insights and Clinical Prospects

  • Tomasz Wasiak,
  • Maria Jaskólska and
  • Adrianna Rutkowska
  • + 2 authors

Liquid biopsy (LB) offers a minimally invasive approach to characterizing and monitoring glioblastoma (GB), a tumor marked by extensive heterogeneity, limited surgical accessibility and rapid molecular evolution. By analyzing circulating tumor-derived components such as circulating tumor DNA (ctDNA), extracellular vesicles (EVs), circulating RNA species and circulating tumor cells (CTC), LB provides dynamic molecular information that cannot be captured by neuroimaging or single-site tissue sampling. Cerebrospinal fluid (CSF) currently yields the highest sensitivity for detecting tumor-specific alterations, while plasma enables repeat monitoring despite lower biomarker abundance. EVs have gained particular prominence due to their ability to preserve DNA, RNA, and protein cargo that reflects key genomic changes, treatment resistance mechanisms, and immune evasion. Although advances are substantial, clinical implementation remains constrained by low analyte concentrations, methodological variability, limited standardization and the high cost of testing, which is rarely reimbursed by insurers. This review summarizes current evidence on circulating biomarkers in GB and highlights research priorities essential for integrating LB into future diagnostic and therapeutic workflows.

6 February 2026

Relative abundance of tumor-derived biomarkers in plasma versus CSF in glioblastoma. CSF obtained intraoperatively from a subarachnoid leak contains higher level of tumor-derived material, including circulating tumor DNA (ctDNA), extracellular vesicles (EVs) and RNA, owing to its direct proximity to the tumor and minimal dilution. In contrast, plasma exhibits low biomarker abundance due to the substantial restrictions imposed by the blood-brain barrier (BBB) and the high background cell free DNA (cfDNA). This difference underpins the higher diagnostic sensitivity of CSF-based LB compared with peripheral blood-based liquid biopsy (LB). Plasma refers to peripheral blood-derived plasma and does not originate directly from the brain parenchyma. Colors differentiate plasma and CSF samples, while arrow thickness reflects the relative abundance of recoverable tumor-derived biomarkers.

Dietary fats are consumed as mixtures, yet it remains unclear whether fatty acid composition, independent of fat content, dictates human macrophage polarization. We compared two defined mixtures containing identical fatty acids (palmitic, oleic, and linoleic acids) in different ratios: a palmitate-enriched mixture (4:3:3) and an unsaturated fat-dominant mixture (2:4:4). In primary human monocyte-derived macrophages, palmitate enrichment increased CD14+CD11b+HLA-DR+ pro-inflammatory polarization, whereas the unsaturated fat-dominant mixture increased CD14+CD11b+CD163+ anti-inflammatory polarization. Mechanistic studies in THP-1-derived macrophages recapitulated these phenotype shifts and identified a reciprocal nuclear-receptor program: palmitate enrichment induced peroxisome proliferator-activated receptor gamma (PPARγ), together with ER-stress mediators EIF2AK3 and DDIT3, while the unsaturated fat-dominant mixture preferentially induced PPARα and IRF4. Pharmacologic modulation demonstrated functional dependence on PPARγ: GW9662 attenuated palmitate-driven M1-like polarization, whereas rosiglitazone disrupted the protective program under unsaturated fat-dominant conditions. These findings show that fatty acid composition, at equivalent total lipid concentration, is a dominant determinant of human macrophage inflammatory fate and highlight PPARγ as a context-dependent lipid sensor.

6 February 2026

Palmitic acid-rich diet reduces intracellular lipid accumulation and alters macrophage morphology. THP-1-derived macrophages were stimulated for 24 h with defined lipid mixtures to mimic dietary fatty acid environments: a palmitic acid-enriched formulation (HFD; PA:OA:LA = 4:3:3) or an unsaturated fat-dominant mixture (GFD; PA:OA:LA = 2:4:4). (A) Representative confocal micrographs showing macrophages stained with phalloidin (red, F-actin cytoskeleton), BODIPY 493/503 (green, neutral lipids), and DAPI (blue, nuclei). Scale bars = 100 µm. HFD treatment markedly reduced intracellular lipid droplet accumulation compared to GFD, as seen by lower BODIPY signal intensity. (B) Quantification of intracellular lipid content based on BODIPY fluorescence intensity normalized to cell count. Data represent mean ± SEM from n = 3 independent experiments. (C) Flow cytometric analyses showing changes in cell complexity (side scatter, SSC) and size (forward scatter, FSC). Representative dot plots display increased granularity in HFD-treated macrophages, consistent with morphological activation. Along with quantification bar graph of granular (high-SSC) macrophage populations expressed as percentage of total cells. Data are presented as mean ± SEM (n = 3); * p < 0.05, ** p < 0.01 by one-way ANOVA with Tukey’s post hoc test.

Tracking Focal Adhesion Turnover: A Novel Reporter for FA-Phagy Flux

  • Kuizhi Qu,
  • Mengjun Dai and
  • Yan-Ning Rui
  • + 5 authors

Focal adhesions (FAs) are critical multi-protein complexes regulating cell adhesion, migration, and survival, and their dysregulation contributes to cancer metastasis and vascular diseases. Despite extensive research on FA formation, little is known about FA turnover, particularly its regulation by autophagy. This study introduces a novel tandem fluorescence reporter capable of tracking the entire FA-phagy flux, from autophagosome formation to lysosomal degradation. The reporter, based on a red–green fluorescence system with a lysosome-specific cleavage site, integrates seamlessly into endogenous focal adhesion complexes, demonstrating sensitivity and specificity to autophagy stimuli. Validated in multiple cell lines, the tool revealed dynamic FA-phagy responses to starvation-induced autophagy and the involvement of autophagy regulators such as mTOR and ATG genes. This versatile reporter provides a powerful tool for investigating FA-phagy mechanisms, with significant implications for cancer biology and vascular research.

6 February 2026

The FA-phagy reporter localizes at focal adhesions. (A) The schematic of FA-phagy reporter design. Both mCherry and GFP were fused to the N-terminus of the focal adhesion marker protein zyxin (abbreviated as mCLG-ZYX), with an added linker-specific cleavage site (LSCS). (B–E) Representative images of HeLa cells expressing the mCLG-ZYX reporter. (B1,D1) GFP signals from the mCLG-ZYX reporter were enhanced by immunostaining with an anti-GFP antibody (green). (B2) Endogenous vinculin and (D2) endogenous paxillin were detected by immunostaining using secondary antibodies conjugated with Alexa Fluor 647 (red). (B3,D3) Merged images of the mCLG-ZYX reporter signals (B1,D1) and endogenous focal adhesion markers, vinculin (B2) or paxillin (D2). (B4–B6,D4–D6) Higher-magnification views of focal adhesion regions indicated in (B1–B3) and (D1–D3). (C,E) Quantification of co-localization ratios for the mCLG-ZYX reporter co-localized with vinculin (D) or paxillin (E). n = 15 cell counts, 20× objective. Scale bar: 10 µm.

Src family tyrosine kinases regulate oocyte maturation and fertilization in many species, yet their physiological roles in Xenopus laevis (X. laevis) remain incompletely defined. Here, we generated three X. laevis Src (xSrc) constructs with defined point mutations allowing for selective immunochemical detection and controlled modulation of kinase activity: wild type (xSrcWT, Arg121His), constitutively active (xSrcKA, Arg121His/Tyr526Phe), and kinase-negative (xSrcKN, Arg121His/Lys294Met). Capped mRNAs were microinjected into immature oocytes, and effects on meiotic maturation and egg activation were analyzed. All constructs produced detectable Src protein within 4–5 h after injection without inducing progesterone-independent maturation. Following progesterone treatment, MAP kinase phosphorylation, CDK1 activation, and germinal vesicle breakdown (GVBD) occurred normally in all groups, although xSrcKA-expressing oocytes showed a modest but reproducible acceleration of MAPK activation and GVBD. Global tyrosine phosphorylation analysis revealed increased phosphorylation of several proteins, including a prominent ~50 kDa substrate, specifically in xSrcKA oocytes. After maturation, oocytes were subjected to artificial activation. xSrcKN-expressing oocytes responded normally to Ca2+ ionophore (A23187), indicating that Src activity is not required for direct Ca2+-mediated activation. In contrast, xSrcKN oocytes exhibited markedly reduced activation in response to hydrogen peroxide or Cathepsin B, which stimulate membrane-associated signaling pathways. These findings demonstrate that Src kinase activity is required for membrane signal-mediated egg activation but is dispensable for activation driven by direct intracellular Ca2+ elevation. Collectively, our results identify Src kinase as a positive regulator of progesterone-induced meiotic maturation and a critical mediator of specific fertilization-like activation pathways in X. laevis.

6 February 2026

Schematic representation of wild-type and mutant X. laevis Src (xSrc) constructs used for expression in oocytes. The full-length xSrc2 protein (accession no. NP_001080738.1) contains three conserved domains: SH3, SH2, and SH1 (kinase domain), with critical regulatory residues Lys294 (ATP-binding site), Tyr415 (autophosphorylation site), and Tyr526 (C-terminal inhibitory phosphorylation site). Three expression constructs were generated: wild type (xSrcWT), constitutively active (xSrcKA, Tyr526Phe), and kinase-negative (xSrcKN, Lys294Met). To enable immunochemical detection distinct from endogenous Src proteins, all constructs included a common Arg121His substitution within the SH3 domain, which renders the recombinant proteins specifically recognizable by the monoclonal antibody mAb327 (anti-human/mouse/chicken Src).

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Cells - ISSN 2073-4409