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Proteomes, Volume 13, Issue 2

June 2025 - 13 articles

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Articles (13)

  • Review
  • Open Access
1 Citations
2,542 Views
34 Pages

Radiotherapy resistance represents a critical aspect of cancer treatment, and molecular characterization is needed to explore the pathways and mechanisms involved. DNA repair, hypoxia, metabolic reprogramming, apoptosis, tumor microenvironment modula...

  • Review
  • Open Access
1 Citations
3,843 Views
25 Pages

Protein deamidation, a nonenzymatic post-translational modification that converts asparagine and glutamine residues into their acidic forms, such as aspartic acid, iso-aspartic acid, or glutamic acid, has emerged as a pivotal process affecting protei...

  • Article
  • Open Access
1,645 Views
13 Pages

A Clinical Validation of a Diagnostic Test for Esophageal Adenocarcinoma Based on a Novel Serum Glycoprotein Biomarker Panel: PromarkerEso

  • Jordana Sheahan,
  • Iris Wang,
  • Peter Galettis,
  • David I. Watson,
  • Virendra Joshi,
  • Michelle M. Hill,
  • Richard Lipscombe,
  • Kirsten Peters and
  • Scott Bringans

Background: Esophageal adenocarcinoma (EAC) diagnosis involves invasive and expensive endoscopy with biopsy, but rising EAC incidence has not been reduced by increased surveillance. This study aimed to develop and clinically validate a novel glycopro...

  • Article
  • Open Access
1,077 Views
14 Pages

Background: Previously, we found that an uncharacterized protein CXorf38 is significantly downregulated in human ZIP8-knockout (KO) cells. Given that ZIP8 regulates essential micronutrients linked to diseases including cancer, this study aims to char...

  • Review
  • Open Access
2 Citations
1,908 Views
17 Pages

Oxidative Stress and Its Role in the Emergence and Progression of Myelodysplastic Syndromes: Insights from Proteomic Analysis and Other Methodologies

  • Anastasia Boura-Theodorou,
  • Konstantina Psatha,
  • Stefania Maniatsi,
  • Areti Kourti,
  • Georgia Kaiafa,
  • Michalis Aivaliotis and
  • Kali Makedou

Myelodysplastic syndromes (MDS) belong to a category of malignant stem-cell and myeloid disorders that deteriorate the function of the hematopoietic system exacerbated by the omnipresent anemia that characterizes myelodysplasia. The pathogenesis of M...

  • Article
  • Open Access
2,181 Views
21 Pages

Knowledge Discovery in Databases of Proteomics by Systems Modeling in Translational Research on Pancreatic Cancer

  • Mathilde Resell,
  • Elisabeth Pimpisa Graarud,
  • Hanne-Line Rabben,
  • Animesh Sharma,
  • Lars Hagen,
  • Linh Hoang,
  • Nan T. Skogaker,
  • Anne Aarvik,
  • Magnus K. Svensson and
  • Manoj Amrutkar
  • + 7 authors

Background: Knowledge discovery in databases (KDD) can contribute to translational research, also known as translational medicine, by bridging the gap between in vitro and in vivo studies, and clinical applications. Here, we propose a ‘systems...

  • Article
  • Open Access
2,448 Views
16 Pages

Background: Deinococcus radiodurans, renowned for its exceptional resistance to radiation, provides a robust model for elucidating cellular stress responses and DNA repair mechanisms. Previous studies have established PprI as a key regulator contribu...

  • Article
  • Open Access
1,752 Views
20 Pages

Analysis of p53-Independent Functions of the Mdm2-MdmX Complex Using Data-Independent Acquisition-Based Profiling

  • Anu Jain,
  • Rafaela Muniz de Queiroz,
  • Jayanta K. Chakrabarty,
  • Karl A. T. Makepeace,
  • Carol Prives and
  • Lewis M. Brown

Background: We utilized data-independent acquisition (DIA) to study the poorly understood biology of Mdm2 and MdmX in a p53-null context. Mdm2 and MdmX form an E3-ligase complex that has as its most well-studied function the negative regulation of th...

  • Article
  • Open Access
2 Citations
5,963 Views
24 Pages

Integrative Spatial Proteomics and Single-Cell RNA Sequencing Unveil Molecular Complexity in Rheumatoid Arthritis for Novel Therapeutic Targeting

  • Xue Wang,
  • Fei Wang,
  • Archana S. Iyer,
  • Heather Knight,
  • Lori J. Duggan,
  • Yingli Yang,
  • Liang Jin,
  • Baoliang Cui,
  • Yupeng He and
  • Jan Schejbal
  • + 4 authors

Understanding the heterogeneity of Rheumatoid Arthritis (RA) and identifying therapeutic targets remain challenging using traditional bulk transcriptomics alone, as it lacks the spatial and protein-level resolution needed to fully capture disease and...

  • Article
  • Open Access
1 Citations
2,675 Views
42 Pages

Intrinsic disorder refers to protein regions that lack a fixed three−dimensional structure under physiological conditions, enabling conformational plasticity. This flexibility allows for diverse functions, including transient interactions, sign...

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Proteomes - ISSN 2227-7382