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Metabolites, Volume 4, Issue 3

2014 September - 19 articles

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Articles (19)

  • Review
  • Open Access
29 Citations
23,177 Views
48 Pages

Unraveling Biochemical Pathways Affected by Mitochondrial Dysfunctions Using Metabolomic Approaches

  • Stéphane Demine,
  • Nagabushana Reddy,
  • Patricia Renard,
  • Martine Raes and
  • Thierry Arnould

25 September 2014

Mitochondrial dysfunction(s) (MDs) can be defined as alterations in the mitochondria, including mitochondrial uncoupling, mitochondrial depolarization, inhibition of the mitochondrial respiratory chain, mitochondrial network fragmentation, mitochondr...

  • Article
  • Open Access
22 Citations
9,959 Views
17 Pages

Chemical Analysis of Whale Breath Volatiles: A Case Study for Non-Invasive Field Health Diagnostics of Marine Mammals

  • Raquel Cumeras,
  • William H.K. Cheung,
  • Frances Gulland,
  • Dawn Goley and
  • Cristina E. Davis

12 September 2014

We explored the feasibility of collecting exhaled breath from a moribund gray whale (Eschrichtius robustus) for potential non-invasive health monitoring of marine mammals. Biogenic volatile organic compound (VOC) profiling is a relatively new field o...

  • Article
  • Open Access
23 Citations
7,408 Views
24 Pages

Metabolic Effects of Known and Novel HDAC and SIRT Inhibitors in Glioblastomas Independently or Combined with Temozolomide

  • Miroslava Cuperlovic-Culf,
  • Mohamed Touaibia,
  • Patrick-Denis St-Coeur,
  • Julie Poitras,
  • Pier Morin and
  • Adrian S. Culf

12 September 2014

Inhibition of protein deacetylation enzymes, alone or in combination with standard chemotherapies, is an exciting addition to cancer therapy. We have investigated the effect of deacetylase inhibition on the metabolism of glioblastoma cells. 1H NMR me...

  • Article
  • Open Access
6 Citations
6,465 Views
15 Pages

11 September 2014

The benefit of calcium channel blockers for cardiovascular prevention against heart attack and stroke has not been firmly supported. We investigated the possible cardiovascular protective effect of diltiazem (DTZ) against injury induced by isoprotere...

  • Article
  • Open Access
17 Citations
8,230 Views
24 Pages

5 September 2014

Volatile organic compounds (VOCs) produced during microbial fermentations determine the flavor of fermented food and are of interest for the production of fragrances or food additives. However, the microbial synthesis of these compounds from simple c...

  • Review
  • Open Access
20 Citations
6,790 Views
11 Pages

27 August 2014

Glioblastoma continues to be an invariably fatal malignancy. The established approach for understanding the biology of these aggressive tumors in an effort to identify novel molecular targets has largely been genotype-based. Unfortunately, clinical g...

  • Article
  • Open Access
6 Citations
9,075 Views
18 Pages

Novel Strategy for Non-Targeted Isotope-Assisted Metabolomics by Means of Metabolic Turnover and Multivariate Analysis

  • Yasumune Nakayama,
  • Yoshihiro Tamada,
  • Hiroshi Tsugawa,
  • Takeshi Bamba and
  • Eiichiro Fukusaki

25 August 2014

Isotope-labeling is a useful technique for understanding cellular metabolism. Recent advances in metabolomics have extended the capability of isotope-assisted studies to reveal global metabolism. For instance, isotope-assisted metabolomics technology...

  • Review
  • Open Access
28 Citations
11,565 Views
23 Pages

21 August 2014

In many plants, biogenic volatile organic compounds (BVOCs) are produced as specialized metabolites that contribute to the characteristics of each plant. The varieties and composition of BVOCs are chemically diverse by plant species and the circumsta...

  • Article
  • Open Access
29 Citations
10,441 Views
19 Pages

Generation and Evaluation of a Genome-Scale Metabolic Network Model of Synechococcus elongatus PCC7942

  • Julián Triana,
  • Arnau Montagud,
  • Maria Siurana,
  • David Fuente,
  • Arantxa Urchueguía,
  • Daniel Gamermann,
  • Javier Torres,
  • Jose Tena,
  • Pedro Fernández De Córdoba and
  • Javier F. Urchueguía

20 August 2014

The reconstruction of genome-scale metabolic models and their applications represent a great advantage of systems biology. Through their use as metabolic flux simulation models, production of industrially-interesting metabolites can be predicted. Due...

  • Review
  • Open Access
49 Citations
10,209 Views
25 Pages

Establishment of Glycosaminoglycan Assays for Mucopolysaccharidoses

  • Shunji Tomatsu,
  • Tsutomu Shimada,
  • Robert W. Mason,
  • Adriana M. Montaño,
  • Joan Kelly,
  • William A. LaMarr,
  • Francyne Kubaski,
  • Roberto Giugliani,
  • Aratrik Guha and
  • Tadao Orii
  • + 4 authors

11 August 2014

Mucopolysaccharidoses (MPS) are a group of lysosomal storage disorders caused by deficiency of the lysosomal enzymes essential for catabolism of glycosaminoglycans (GAGs). Accumulation of undegraded GAGs results in dysfunction of multiple organs, res...

  • Brief Report
  • Open Access
49 Citations
10,562 Views
15 Pages

The Succinated Proteome of FH-Mutant Tumours

  • Ming Yang,
  • Nicola Ternette,
  • Huizhong Su,
  • Raliat Dabiri,
  • Benedikt M. Kessler,
  • Julie Adam,
  • Bin Tean Teh and
  • Patrick J. Pollard

7 August 2014

Inherited mutations in the Krebs cycle enzyme fumarate hydratase (FH) predispose to hereditary leiomyomatosis and renal cell cancer (HLRCC). Loss of FH activity in HLRCC tumours causes accumulation of the Krebs cycle intermediate fumarate to high lev...

  • Article
  • Open Access
21 Citations
8,392 Views
17 Pages

Carbon Partitioning in Green Algae (Chlorophyta) and the Enolase Enzyme

  • Jürgen E. W. Polle,
  • Peter Neofotis,
  • Andy Huang,
  • William Chang,
  • Kiran Sury and
  • Eliza M. Wiech

4 August 2014

The exact mechanisms underlying the distribution of fixed carbon within photoautotrophic cells, also referred to as carbon partitioning, and the subcellular localization of many enzymes involved in carbon metabolism are still unknown. In contrast to...

  • Communication
  • Open Access
13 Citations
6,790 Views
11 Pages

4 August 2014

In the unicellular green alga Chlorella sorokiniana (211/8 k), the protein O-acetylserine(thiol)lyase (OASTL), representing the key-enzyme in the biosynthetic cysteine pathway, was isolated and purified to apparent homogeneity. The purification was...

  • Article
  • Open Access
55 Citations
9,347 Views
13 Pages

Metabolite Profiling of Root Exudates of Common Bean under Phosphorus Deficiency

  • Keitaro Tawaraya,
  • Ryota Horie,
  • Saki Saito,
  • Tadao Wagatsuma,
  • Kazuki Saito and
  • Akira Oikawa

16 July 2014

Root exudates improve the nutrient acquisition of plants and affect rhizosphere microbial communities. The plant nutrient status affects the composition of root exudates. The purpose of this study was to examine common bean (Phaseolus vulgaris L.) ro...

  • Article
  • Open Access
7 Citations
5,762 Views
8 Pages

8 July 2014

Ethane in human breath derives from lipid peroxidation, specifically the reaction between omega-3 fatty acids and reactive oxygen species. It has been proposed to be a non-invasive marker of oxidative stress, a deleterious process which may play an...

  • Article
  • Open Access
20 Citations
9,747 Views
19 Pages

Metabolic Profiling of Retrograde Pathway Transcription Factors Rtg1 and Rtg3 Knockout Yeast

  • Zanariah Hashim,
  • Yukio Mukai,
  • Takeshi Bamba and
  • Eiichiro Fukusaki

8 July 2014

Rtg1 and Rtg3 are two basic helix-loop-helix (bHLH) transcription factors found in yeast Saccharomyces cerevisiae that are involved in the regulation of the mitochondrial retrograde (RTG) pathway. Under RTG response, anaplerotic synthesis of citrate...

  • Review
  • Open Access
20 Citations
8,750 Views
25 Pages

Metabolomics for Biomarker Discovery in Gastroenterological Cancer

  • Shin Nishiumi,
  • Makoto Suzuki,
  • Takashi Kobayashi,
  • Atsuki Matsubara,
  • Takeshi Azuma and
  • Masaru Yoshida

7 July 2014

The study of the omics cascade, which involves comprehensive investigations based on genomics, transcriptomics, proteomics, metabolomics, etc., has developed rapidly and now plays an important role in life science research. Among such analyses, metab...

  • Article
  • Open Access
54 Citations
10,108 Views
15 Pages

Insect-Induced Daidzein, Formononetin and Their Conjugates in Soybean Leaves

  • Shinichiro Murakami,
  • Ryu Nakata,
  • Takako Aboshi,
  • Naoko Yoshinaga,
  • Masayoshi Teraishi,
  • Yutaka Okumoto,
  • Atsushi Ishihara,
  • Hironobu Morisaka,
  • Alisa Huffaker and
  • Naoki Mori
  • + 1 author

4 July 2014

In response to attack by bacterial pathogens, soybean (Gylcine max) leaves accumulate isoflavone aglucones, isoflavone glucosides, and glyceollins. In contrast to pathogens, the dynamics of related insect-inducible metabolites in soybean leaves remai...

  • Article
  • Open Access
25 Citations
9,371 Views
15 Pages

30 June 2014

Nutrient balance is important for photosynthetic growth and biomass production in microalgae. Here, we investigated and compared metabolic responses of amino acid pools to nitrogen and sulfur starvation in a unicellular model cyanobacterium, Synecho...

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Metabolites - ISSN 2218-1989