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Metabolites, Volume 11, Issue 6

2021 June - 77 articles

Cover Story: The General Unified Microbiome Profiling Pipeline (GUMPP) is designed for large-scale (HPC level), streamlined, and reproducible analysis of bacterial 16S rRNA data and prediction of microbial metagenomes, enzymatic reactions, and metabolic pathways from amplicon data. The GUMPP workflow introduces reproducible data analyses at each of the three levels of resolution: genus; operational taxonomic units (OTUs); amplicon sequence variants (ASVs). The resulting datasets can be coupled with biostatistical and mathematical machine learning approaches to play a significant role in extracting truly significant and meaningful information for the development of mechanistic hypotheses that are applicable to the development of novel therapies in personalized medicine. View this paper
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Articles (77)

  • Article
  • Open Access
5 Citations
3,266 Views
7 Pages

The development of obesity and type 2 diabetes (T2D) has been associated with impaired mitochondrial function. In pancreatic beta (β) cells, mitochondrial energy metabolism plays a central role in triggering and controlling glucose-stimulated insulin...

  • Review
  • Open Access
28 Citations
11,026 Views
37 Pages

What We Know So Far about the Metabolite-Mediated Microbiota-Intestinal Immunity Dialogue and How to Hear the Sound of This Crosstalk

  • Clément Caffaratti,
  • Caroline Plazy,
  • Geoffroy Mery,
  • Abdoul-Razak Tidjani,
  • Federica Fiorini,
  • Sarah Thiroux,
  • Bertrand Toussaint,
  • Dalil Hannani and
  • Audrey Le Gouellec

Trillions of microorganisms, termed the “microbiota”, reside in the mammalian gastrointestinal tract, and collectively participate in regulating the host phenotype. It is now clear that the gut microbiota, metabolites, and intestinal immune function...

  • Article
  • Open Access
7 Citations
3,289 Views
15 Pages

Statistical Integration of ‘Omics Data Increases Biological Knowledge Extracted from Metabolomics Data: Application to Intestinal Exposure to the Mycotoxin Deoxynivalenol

  • Marie Tremblay-Franco,
  • Cécile Canlet,
  • Philippe Pinton,
  • Yannick Lippi,
  • Roselyne Gautier,
  • Claire Naylies,
  • Manon Neves,
  • Isabelle P. Oswald,
  • Laurent Debrauwer and
  • Imourana Alassane-Kpembi

The effects of low doses of toxicants are often subtle and information extracted from metabolomic data alone may not always be sufficient. As end products of enzymatic reactions, metabolites represent the final phenotypic expression of an organism an...

  • Review
  • Open Access
50 Citations
11,337 Views
19 Pages

Therapeutic Potential of Date Palm against Human Infertility: A Review

  • Maham Shehzad,
  • Hina Rasheed,
  • Summar A. Naqvi,
  • Jameel M. Al-Khayri,
  • Jose Manuel Lorenzo,
  • Mohammed Abdulrazzaq Alaghbari,
  • Muhammad Faisal Manzoor and
  • Rana Muhammad Aadil

Male and female infertility is a global major health problem. Approximately 15% of couples of a reproductive age are unable to achieve the desired pregnancy within 12 months, despite daily unprotected sexual intercourse, and about 10% of infertilitie...

  • Article
  • Open Access
25 Citations
5,441 Views
17 Pages

A Metabolic Choreography of Maize Plants Treated with a Humic Substance-Based Biostimulant under Normal and Starved Conditions

  • Kgalaletso Othibeng,
  • Lerato Nephali,
  • Anza-Tshilidzi Ramabulana,
  • Paul Steenkamp,
  • Daniel Petras,
  • Kyo Bin Kang,
  • Hugo Opperman,
  • Johan Huyser and
  • Fidele Tugizimana

Humic substance (HS)-based biostimulants show potentials as sustainable strategies for improved crop development and stress resilience. However, cellular and molecular mechanisms governing the agronomically observed effects of HS on plants remain eni...

  • Article
  • Open Access
9 Citations
3,635 Views
18 Pages

A Time-Course Comparison of Skeletal Muscle Metabolomic Alterations in Walker-256 Tumour-Bearing Rats at Different Stages of Life

  • Gabriela de Matuoka e Chiocchetti,
  • Leisa Lopes-Aguiar,
  • Natália Angelo da Silva Miyaguti,
  • Lais Rosa Viana,
  • Carla de Moraes Salgado,
  • Ophelie Ocean Orvoën,
  • Derly Florindo,
  • Rogério Williams dos Santos and
  • Maria Cristina Cintra Gomes-Marcondes

Cancer cachexia is a severe wasting condition that needs further study to find ways to minimise the effects of damage and poor prognosis. Skeletal muscle is the most impacted tissue in cancer cachexia; thus, elucidation of its metabolic alterations c...

  • Article
  • Open Access
7 Citations
5,702 Views
14 Pages

The Capacity to Secrete Insulin Is Dose-Dependent to Extremely High Glucose Concentrations: A Key Role for Adenylyl Cyclase

  • Katherine M. Gerber,
  • Nicholas B. Whitticar,
  • Daniel R. Rochester,
  • Kathryn L. Corbin,
  • William J. Koch and
  • Craig S. Nunemaker

Insulin secretion is widely thought to be maximally stimulated in glucose concentrations of 16.7-to-30 mM (300-to-540 mg/dL). However, insulin secretion is seldom tested in hyperglycemia exceeding these levels despite the Guinness World Record being...

  • Review
  • Open Access
86 Citations
8,146 Views
13 Pages

Asparagine: A Metabolite to Be Targeted in Cancers

  • Jie Jiang,
  • Sandeep Batra and
  • Ji Zhang

Amino acids play central roles in cancer progression beyond their function as building blocks for protein synthesis. Thus, targeting amino acid acquisition and utilization has been proved to be therapeutically beneficial in various pre-clinical model...

  • Article
  • Open Access
17 Citations
10,174 Views
14 Pages

The Effects of Fasting or Ketogenic Diet on Endurance Exercise Performance and Metabolism in Female Mice

  • Lola E. Holcomb,
  • Caitlin C. O’Neill,
  • Elizabeth A. DeWitt and
  • Stephen C. Kolwicz

The promotion of ketone body (KB) metabolism via ketosis has been suggested as a strategy to increase exercise performance. However, studies in humans and animals have yielded inconsistent results. The purpose of the current study was to examine the...

  • Article
  • Open Access
34 Citations
11,439 Views
12 Pages

Flavor and nutritional quality has been negatively impacted during the course of domestication and improvement of the cultivated tomato (Solanum lycopersicum). Recent emphasis on consumers has emphasized breeding strategies that focus on flavor-...

  • Feature Paper
  • Article
  • Open Access
6 Citations
3,154 Views
22 Pages

A Compositional Model to Predict the Aggregated Isotope Distribution for Average DNA and RNA Oligonucleotides

  • Annelies Agten,
  • Piotr Prostko,
  • Melvin Geubbelmans,
  • Youzhong Liu,
  • Thomas De Vijlder and
  • Dirk Valkenborg

Structural modifications of DNA and RNA molecules play a pivotal role in epigenetic and posttranscriptional regulation. To characterise these modifications, more and more MS and MS/MS- based tools for the analysis of nucleic acids are being developed...

  • Article
  • Open Access
9 Citations
3,343 Views
10 Pages

Differences in Clinical and Dietary Characteristics, Serum Adipokine Levels, and Metabolomic Profiles between Early- and Late-Onset Gout

  • Young Sun Suh,
  • Hae Sook Noh,
  • Hyun-Jin Kim,
  • Yun-Hong Cheon,
  • Mingyo Kim,
  • Hanna Lee,
  • Hyun-Ok Kim and
  • Sang-Il Lee

This study aimed to identify differences in clinical and dietary characteristics, serum adipokine levels, and metabolomic profiles between early- and late-onset gout. Eighty-three men with gout were divided into an early-onset group (n = 38, aged <...

  • Article
  • Open Access
7 Citations
3,925 Views
29 Pages

Evaluating the Robustness of Biomarkers of Dairy Food Intake in a Free-Living Population Using Single- and Multi-Marker Approaches

  • Katherine J. Li,
  • Kathryn J. Burton-Pimentel,
  • Elske M. Brouwer-Brolsma,
  • Edith J. M. Feskens,
  • Carola Blaser,
  • René Badertscher,
  • Reto Portmann and
  • Guy Vergères

Studies examining associations between self-reported dairy intake and health are inconclusive, but biomarkers hold promise for elucidating such relationships by offering objective measures of dietary intake. Previous human intervention studies identi...

  • Article
  • Open Access
5 Citations
3,788 Views
16 Pages

Fructose Causes Liver Damage, Polyploidy, and Dysplasia in the Setting of Short Telomeres and p53 Loss

  • Christopher Chronowski,
  • Viktor Akhanov,
  • Doug Chan,
  • Andre Catic,
  • Milton Finegold and
  • Ergün Sahin

Studies in humans and model systems have established an important role of short telomeres in predisposing to liver fibrosis through pathways that are incompletely understood. Recent studies have shown that telomere dysfunction impairs cellular metabo...

  • Article
  • Open Access
7 Citations
3,301 Views
16 Pages

Characterizing Autophagy in the Cold Ischemic Injury of Small Bowel Grafts: Evidence from Rat Jejunum

  • Ibitamuno Caleb,
  • Luca Erlitz,
  • Vivien Telek,
  • Mónika Vecsernyés,
  • György Sétáló,
  • Péter Hardi,
  • Ildikó Takács,
  • Gábor Jancsó and
  • Tibor Nagy

Cold ischemic injury to the intestine during preservation remains an unresolved issue in transplantation medicine. Autophagy, a cytoplasmic protein degradation pathway, is essential for metabolic adaptation to starvation, hypoxia, and ischemia. It ha...

  • Article
  • Open Access
19 Citations
4,836 Views
15 Pages

Identification of Koala (Phascolarctos cinereus) Faecal Cortisol Metabolites Using Liquid Chromatography-Mass Spectrometry and Enzyme Immunoassays

  • Flavia Santamaria,
  • Christopher K. Barlow,
  • Rolf Schlagloth,
  • Ralf B. Schittenhelm,
  • Rupert Palme and
  • Joerg Henning

The koala (Phascolarctos cinereus) is an arboreal folivorous marsupial endemic to Australia. Anthropogenic activities and climate change are threats to this species’ survival and are potential stressors. A suitable non-invasive method is needed to ob...

  • Article
  • Open Access
4 Citations
5,008 Views
16 Pages

Serum Metabolites Responding in a Dose-Dependent Manner to the Intake of a High-Fat Meal in Normal Weight Healthy Men Are Associated with Obesity

  • Ueli Bütikofer,
  • David Burnand,
  • Reto Portmann,
  • Carola Blaser,
  • Flurina Schwander,
  • Katrin A. Kopf-Bolanz,
  • Kurt Laederach,
  • René Badertscher,
  • Barbara Walther and
  • Guy Vergères

Although the composition of the human blood metabolome is influenced both by the health status of the organism and its dietary behavior, the interaction between these two factors has been poorly characterized. This study makes use of a previously pub...

  • Article
  • Open Access
3 Citations
4,030 Views
19 Pages

Bioactivation of Isoxazole-Containing Bromodomain and Extra-Terminal Domain (BET) Inhibitors

  • Noah R. Flynn,
  • Michael D. Ward,
  • Mary A. Schleiff,
  • Corentine M. C. Laurin,
  • Rohit Farmer,
  • Stuart J. Conway,
  • Gunnar Boysen,
  • S. Joshua Swamidass and
  • Grover P. Miller

The 3,5-dimethylisoxazole motif has become a useful and popular acetyl-lysine mimic employed in isoxazole-containing bromodomain and extra-terminal (BET) inhibitors but may introduce the potential for bioactivations into toxic reactive metabolites. A...

  • Article
  • Open Access
23 Citations
4,422 Views
21 Pages

Metabolite Profiling in Arabidopsisthaliana with Moderately Impaired Photorespiration Reveals Novel Metabolic Links and Compensatory Mechanisms of Photorespiration

  • Stefan Timm,
  • Adriano Nunes-Nesi,
  • Alexandra Florian,
  • Marion Eisenhut,
  • Katja Morgenthal,
  • Markus Wirtz,
  • Rüdiger Hell,
  • Wolfram Weckwerth,
  • Martin Hagemann and
  • Hermann Bauwe
  • + 1 author

Photorespiration is an integral component of plant primary metabolism. Accordingly, it has been often observed that impairing the photorespiratory flux negatively impacts other cellular processes. In this study, the metabolic acclimation of the Arabi...

  • Article
  • Open Access
5 Citations
3,649 Views
16 Pages

Biogenic Volatile Organic Compounds (BVOCs) include many chemical compounds emitted by plants into the atmosphere. These compounds have a great effect on biosphere–atmosphere interactions and may affect the concentration of atmospheric pollutants, wi...

  • Article
  • Open Access
4 Citations
2,806 Views
22 Pages

Feature screening is an important and challenging topic in current class-imbalance learning. Most of the existing feature screening algorithms in class-imbalance learning are based on filtering techniques. However, the variable rankings obtained by v...

  • Article
  • Open Access
16 Citations
5,285 Views
15 Pages

Agronomic and Metabolomic Side-Effects of a Divergent Selection for Indol-3-Ylmethylglucosinolate Content in Kale (Brassica oleracea var. acephala)

  • Jorge Poveda,
  • Pablo Velasco,
  • Antonio de Haro,
  • Tor J. Johansen,
  • Alex C. McAlvay,
  • Christian Möllers,
  • Jørgen A.B. Mølmann,
  • Elena Ordiales and
  • Víctor M. Rodríguez

Brassica oleracea var. acephala (kale) is a cruciferous vegetable widely cultivated for its leaves and flower buds in Europe and a food of global interest as a “superfood”. Brassica crops accumulate phytochemicals called glucosinolates (GSLs) which p...

  • Review
  • Open Access
38 Citations
5,495 Views
17 Pages

Coenzyme Q (ubiquinone or CoQ) is a conserved polyprenylated lipid essential for mitochondrial respiration. CoQ is composed of a redox-active benzoquinone ring and a long polyisoprenyl tail that serves as a membrane anchor. A classic pathway leading...

  • Review
  • Open Access
22 Citations
4,355 Views
17 Pages

Hyperpolarized metabolic MRI with 13C-labeled agents has emerged as a powerful technique for in vivo assessments of real-time metabolism that can be used across scales of cells, tissue slices, animal models, and human subjects. Hyperpolarized contras...

  • Article
  • Open Access
3 Citations
3,957 Views
15 Pages

Ectopic Leptin Production by Intraocular Pancreatic Islet Organoids Ameliorates the Metabolic Phenotype of ob/ob Mice

  • Barbara Leibiger,
  • Tilo Moede,
  • Ismael Valladolid-Acebes,
  • Meike Paschen,
  • Montse Visa,
  • Ingo B. Leibiger and
  • Per-Olof Berggren

The pancreatic islets of Langerhans consist of endocrine cells that secrete peptide hormones into the blood circulation in response to metabolic stimuli. When transplanted into the anterior chamber of the eye (ACE), pancreatic islets engraft and main...

  • Article
  • Open Access
7 Citations
4,168 Views
13 Pages

Dried Blood Spot (DBS) Methodology Study for Biomarker Discovery in Lysosomal Storage Disease (LSD)

  • Corina-Marcela Rus,
  • Sebastiano Di Bucchianico,
  • Claudia Cozma,
  • Ralf Zimmermann and
  • Peter Bauer

Lysosomal storage diseases (LSDs) are a heterogeneous group of inherited metabolic diseases caused by mutations in genes encoding for proteins involved in the lysosomal degradation of macromolecules. They occur in approximately 1 in 5000 live births...

  • Article
  • Open Access
78 Citations
6,066 Views
19 Pages

Metabolic Profiles of Brassica juncea Roots in Response to Cadmium Stress

  • Piaopiao Tan,
  • Chaozhen Zeng,
  • Chang Wan,
  • Zhe Liu,
  • Xujie Dong,
  • Jiqing Peng,
  • Haiyan Lin,
  • Mei Li,
  • Zhixiang Liu and
  • Mingli Yan

Brassica juncea has great application potential in phytoremediation of cadmium (Cd)-contaminated soil because of its excellent Cd accumulating and high biomass. In this study, we compared the effects of Cd under 48 h and 7 d stress in roots of Brassi...

  • Article
  • Open Access
5 Citations
3,607 Views
12 Pages

Comparative Metabolic Profiling of Grape Pulp during the Growth Process Reveals Systematic Influences under Root Restriction

  • Feng Leng,
  • Shuyan Duan,
  • Shiren Song,
  • Liping Zhao,
  • Wenping Xu,
  • Caixi Zhang,
  • Chao Ma,
  • Lei Wang and
  • Shiping Wang

The compositions and contents of metabolites in the pulp tissue play critical roles in the fruit quality for table grape. In this study, the effects of root restriction (RR) on the primary and secondary metabolites of pulp tissue at five developmenta...

  • Article
  • Open Access
8 Citations
4,010 Views
16 Pages

The Pharmacometabodynamics of Gefitinib after Intravenous Administration to Mice: A Preliminary UPLC–IM–MS Study

  • Billy Molloy,
  • Lauren Mullin,
  • Adam King,
  • Lee A. Gethings,
  • Robert S. Plumb and
  • Ian D. Wilson

The effects of intravenous gefitinib (10 mg/kg), an anilinoquinazoline thymidylate kinase inhibitor (TKI), selective for the epidermal growth factor receptor (EGFR), on the urinary metabotypes of mice were studied. We hypothesized that, in response t...

  • Article
  • Open Access
26 Citations
5,812 Views
18 Pages

Metabolomic Characterization of Commercial, Old, and Red-Fleshed Apple Varieties

  • Adriana Teresa Ceci,
  • Michele Bassi,
  • Walter Guerra,
  • Michael Oberhuber,
  • Peter Robatscher,
  • Fulvio Mattivi and
  • Pietro Franceschi

In this study, a metabolomic investigation was presented to correlate single polyphenolic compounds in apple pulp with quality characteristics such as antioxidant activity and content of phenolic compounds and anthocyanins in apple skin. Since the co...

  • Feature Paper
  • Article
  • Open Access
28 Citations
5,512 Views
18 Pages

Cryptosporidiosis Modulates the Gut Microbiome and Metabolism in a Murine Infection Model

  • Avinash V. Karpe,
  • Melanie L. Hutton,
  • Steven J. Mileto,
  • Meagan L. James,
  • Chris Evans,
  • Rohan M. Shah,
  • Amol B. Ghodke,
  • Katie E. Hillyer,
  • Suzanne S. Metcalfe and
  • David J. Beale
  • + 4 authors

Cryptosporidiosis is a major human health concern globally. Despite well-established methods, misdiagnosis remains common. Our understanding of the cryptosporidiosis biochemical mechanism remains limited, compounding the difficulty of clinical diagno...

  • Article
  • Open Access
6 Citations
4,003 Views
14 Pages

Effects of Dufulin on Oxidative Stress and Metabolomic Profile of Tubifex

  • Yile Yu,
  • Yuxin Zhu,
  • Jing Yang,
  • Wentao Zhu,
  • Zhiqiang Zhou and
  • Renke Zhang

Dufulin is a highly effective antiviral pesticide used in plants. In this study, a seven-day experiment was conducted to evaluate the effects of Dufulin at five different concentrations (1 × 10−4, 1 × 10−3, 1 × 10−2, 0.1, and 1 mg/L) on Tubifex. LC-M...

  • Article
  • Open Access
5 Citations
3,160 Views
10 Pages

Circulating Levels of Pro-Neurotensin and Its Relationship with Nonalcoholic Steatohepatitis and Hepatic Lipid Metabolism

  • Beatriz Villar,
  • Laia Bertran,
  • Carmen Aguilar,
  • Jessica Binetti,
  • Salomé Martínez,
  • Fàtima Sabench,
  • Monica Real,
  • David Riesco,
  • Marta París and
  • Teresa Auguet
  • + 2 authors

Recent studies suggest a link between pro-neurotensin (pro-NT) and nonalcoholic fatty liver disease (NAFLD), but the published data are conflicting. Thus, we aimed to analyze pro-NT levels in women with morbid obesity (MO) and NAFLD to investigate if...

  • Feature Paper
  • Article
  • Open Access
12 Citations
5,684 Views
19 Pages

Metabolomic Study of High-Fat Diet-Induced Obese (DIO) and DIO Plus CCl4-Induced NASH Mice and the Effect of Obeticholic Acid

  • Nanlin Zhu,
  • Suling Huang,
  • Qingli Zhang,
  • Zhuohui Zhao,
  • Hui Qu,
  • Mengmeng Ning,
  • Ying Leng and
  • Jia Liu

The pathophysiology of nonalcoholic fatty liver disease (NAFLD) is a complex process involving metabolic and inflammatory changes in livers and other organs, but the pathogenesis is still not well clarified. Two mouse models were established to study...

  • Review
  • Open Access
21 Citations
5,167 Views
19 Pages

Metabolomics Studies in Psoriatic Disease: A Review

  • John Koussiouris,
  • Nikita Looby,
  • Melanie Anderson,
  • Vathany Kulasingam and
  • Vinod Chandran

Metabolomics investigates a broad range of small molecules, allowing researchers to understand disease-related changes downstream of the genome and proteome in response to external environmental stimuli. It is an emerging technology that holds promis...

  • Article
  • Open Access
17 Citations
4,620 Views
18 Pages

Recent magnetic resonance studies in healthy and cancerous organs have concluded that deuterated metabolites possess highly desirable properties for mapping non-invasively and, as they happen, characterizing glycolysis and other biochemical processes...

  • Article
  • Open Access
10 Citations
7,421 Views
15 Pages

Urinary Elimination of Ecdysterone and Its Metabolites Following a Single-Dose Administration in Humans

  • Gabriella Ambrosio,
  • Tasha Yuliandra,
  • Bernhard Wuest,
  • Monica Mazzarino,
  • Xavier de la Torre,
  • Francesco Botrè,
  • Patrick Diel,
  • Eduard Isenmann and
  • Maria Kristina Parr

Ecdysterone is a phytosteroid widely discussed for its various pharmacological, growth-promoting, and anabolic effects, mediated by the activation of estrogen receptor beta (ERbeta). Performance-enhancement in sports was demonstrated recently, and ec...

  • Article
  • Open Access
36 Citations
4,939 Views
19 Pages

Metabolite Profiling Reveals Distinct Modulation of Complex Metabolic Networks in Non-Pigmented, Black, and Red Rice (Oryza sativa L.) Cultivars

  • Tae Jin Kim,
  • So Yeon Kim,
  • Young Jin Park,
  • Sun-Hyung Lim,
  • Sun-Hwa Ha,
  • Sang Un Park,
  • Bumkyu Lee and
  • Jae Kwang Kim

Comprehensive profiling of primary and secondary metabolites was performed to understand metabolic differences associated with color formation in pigmented rice (Oryza sativa L.). Overall, 110 metabolites from non-pigmented, black, and red rice culti...

  • Article
  • Open Access
32 Citations
5,526 Views
18 Pages

Plant Transcriptome Reprograming and Bacterial Extracellular Metabolites Underlying Tomato Drought Resistance Triggered by a Beneficial Soil Bacteria

  • Rafael J. L. Morcillo,
  • Juan I. Vílchez,
  • Song Zhang,
  • Richa Kaushal,
  • Danxia He,
  • Hailing Zi,
  • Renyi Liu,
  • Karsten Niehaus,
  • Avtar K. Handa and
  • Huiming Zhang

Water deficit is one of the major constraints to crop production and food security worldwide. Some plant growth-promoting rhizobacteria (PGPR) strains are capable of increasing plant drought resistance. Knowledge about the mechanisms underlying bacte...

  • Article
  • Open Access
22 Citations
5,109 Views
15 Pages

Hypothalamic Expression of Neuropeptide Y (NPY) and Pro-OpioMelanoCortin (POMC) in Adult Male Mice Is Affected by Chronic Exposure to Endocrine Disruptors

  • Marilena Marraudino,
  • Elisabetta Bo,
  • Elisabetta Carlini,
  • Alice Farinetti,
  • Giovanna Ponti,
  • Isabella Zanella,
  • Diego Di Lorenzo,
  • Gian Carlo Panzica and
  • Stefano Gotti

In the arcuate nucleus, neuropeptide Y (NPY) neurons, increase food intake and decrease energy expenditure, and control the activity of pro-opiomelanocortin (POMC) neurons, that decrease food intake and increase energy expenditure. Both systems proje...

  • Review
  • Open Access
27 Citations
5,710 Views
17 Pages

Stable Isotope Abundance and Fractionation in Human Diseases

  • Illa Tea,
  • Arnaud De Luca,
  • Anne-Marie Schiphorst,
  • Mathilde Grand,
  • Sophie Barillé-Nion,
  • Eric Mirallié,
  • Delphine Drui,
  • Michel Krempf,
  • Régis Hankard and
  • Guillaume Tcherkez

The natural abundance of heavy stable isotopes (13C, 15N, 18O, etc.) is now of considerable importance in many research fields, including human physiology. In fact, it varies between tissues and metabolites due to isotope effects in biological proces...

  • Article
  • Open Access
1 Citations
3,206 Views
15 Pages

Alterations of Striato-Thalamic Metabolism in Normal Aging Human Brain—An MR Metabolic Imaging Study

  • Mareike Ahlswede,
  • Patrick Nösel,
  • Andrew A. Maudsley,
  • Sulaiman Sheriff,
  • Nima Mahmoudi,
  • Paul Bronzlik,
  • Heinrich Lanfermann and
  • Xiao-Qi Ding

Aging effects on striato-thalamic metabolism in healthy human brains were studied in vivo using short-TE whole brain 1H-MR spectroscopic imaging (wbMRSI) on eighty healthy subjects aged evenly between 20 to 70 years at 3T. Relative concentrations of...

  • Article
  • Open Access
14 Citations
4,413 Views
13 Pages

Pemafibrate Protects against Fatty Acid-Induced Nephropathy by Maintaining Renal Fatty Acid Metabolism

  • Daiki Aomura,
  • Makoto Harada,
  • Yosuke Yamada,
  • Takero Nakajima,
  • Koji Hashimoto,
  • Naoki Tanaka and
  • Yuji Kamijo

As classical agonists for peroxisomal proliferator-activated receptor alpha (PPARα), fibrates activate renal fatty acid metabolism (FAM) and provide renoprotection. However, fibrate prescription is limited in patients with kidney disease, since impai...

  • Article
  • Open Access
23 Citations
9,055 Views
13 Pages

Accurate Lipid Quantification of Tissue Homogenates Requires Suitable Sample Concentration, Solvent Composition, and Homogenization Procedure—A Case Study in Murine Liver

  • Marcus Höring,
  • Sabrina Krautbauer,
  • Louisa Hiltl,
  • Verena Babl,
  • Alexander Sigruener,
  • Ralph Burkhardt and
  • Gerhard Liebisch

Lipidomics aim to quantify lipid species in all kinds of samples, including tissues. To subject a fixed amount of sample to various workflows, tissue homogenates were frequently prepared at defined concentrations in water or by addition of organic so...

  • Article
  • Open Access
4 Citations
4,122 Views
17 Pages

Identifying the interactions of functional, biotic, and abiotic factors that define plant–insect communities has long been a goal of community ecologists. Metabolomics approaches facilitate a broader understanding of how phytochemistry mediates the f...

  • Article
  • Open Access
2 Citations
4,160 Views
14 Pages

Machine Learning Algorithms, Applied to Intact Islets of Langerhans, Demonstrate Significantly Enhanced Insulin Staining at the Capillary Interface of Human Pancreatic β Cells

  • Louise Cottle,
  • Ian Gilroy,
  • Kylie Deng,
  • Thomas Loudovaris,
  • Helen E. Thomas,
  • Anthony J. Gill,
  • Jaswinder S. Samra,
  • Melkam A. Kebede,
  • Jinman Kim and
  • Peter Thorn

Pancreatic β cells secrete the hormone insulin into the bloodstream and are critical in the control of blood glucose concentrations. β cells are clustered in the micro-organs of the islets of Langerhans, which have a rich capillary network. Recent wo...

  • Article
  • Open Access
26 Citations
5,678 Views
12 Pages

Identification of Salivary Microorganisms and Metabolites Associated with Halitosis

  • Jae-kwon Jo,
  • Seung-Ho Seo,
  • Seong-Eun Park,
  • Hyun-Woo Kim,
  • Eun-Ju Kim,
  • Chang-Su Na,
  • Kwang-Moon Cho,
  • Sun-Jae Kwon,
  • Young-Ho Moon and
  • Hong-Seok Son

Halitosis is mainly caused by the action of oral microbes. The purpose of this study was to investigate the differences in salivary microbes and metabolites between subjects with and without halitosis. Of the 52 participants, 22 were classified into...

  • Article
  • Open Access
21 Citations
6,852 Views
15 Pages

Towards Standards for Human Fecal Sample Preparation in Targeted and Untargeted LC-HRMS Studies

  • Farideh Hosseinkhani,
  • Anne-Charlotte Dubbelman,
  • Naama Karu,
  • Amy C. Harms and
  • Thomas Hankemeier

Gut microbiota and their metabolic products are increasingly being recognized as important modulators of human health. The fecal metabolome provides a functional readout of the interactions between human metabolism and the gut microbiota in health an...

  • Review
  • Open Access
54 Citations
6,740 Views
14 Pages

Myelin is a lipid-rich membrane that wraps around axons and facilitates rapid action potential propagation. In the brain, myelin is synthesized and maintained by oligodendrocytes. These cells have a high metabolic demand that requires mitochondrial A...

  • Article
  • Open Access
2 Citations
3,158 Views
13 Pages

Successful Islet Outcomes Using Australia-Wide Donors: A National Centre Experience

  • Wayne J Hawthorne,
  • Sussan Davies,
  • Hee-chang Mun,
  • Yi Vee Chew,
  • Lindy Williams,
  • Patricia Anderson,
  • Natasha Rogers and
  • Philip J O’Connell

Cold ischemia and hence travel time can adversely affect outcomes of islet isolation. The aim of this study was to compare the isolation and transplant outcomes of donor pancreata according to the distance from islet isolation facility. Principally,...

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Metabolites - ISSN 2218-1989