Microbial Ecology of Rotten Sea Ice: Implications for Arctic Carbon Cycling with Global Warming
Abstract
1. Introduction
1.1. “Rotten” Ice in a Changing Arctic
1.2. Role of Rotten Ice in Arctic Biogeochemical Cycles
2. Materials and Methods
2.1. Sample Collection and Processing
2.2. Chemical and Biological Measurements
2.3. Phytoplankton Abundance and Identification
2.4. Nucleotide Extraction, Amplification, Sequencing, and Processing
2.5. Statistical Analyses in Python
3. Results
3.1. Physical and Chemical Properties
3.2. Microscopy and Cell Counts
3.3. Photopigments
3.4. 16S rRNA Gene and Transcript Sequences: Bacteria and Archaea
3.5. 18S rRNA Gene and Transcript Sequences: Eukaryota
3.6. Comparing DNA to cDNA
3.7. Relating Environmental Data to Microbial Communities
4. Discussion
4.1. Rotten Ice Is a Distinct Habitat from Earlier-Season Ice
4.2. Rotten Ice Retains Particulate Carbon and Nitrogen
4.3. Comparison of Rotten Ice with Other Late-Season Sea Ice Environments
4.4. Late-Season Shifts in Sea Ice Microbial Communities
4.5. Differences in the Active (cDNA) and Latent (DNA) Microbial Communities
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| rRNA | Ribosomal Ribonucleic Acid |
| EPS | extracellular polymeric substances |
| pEPS | particulate extracellular polymeric substances |
| SPM | suspended particulate matter |
| POC | Particulate organic carbon |
| PN | Particulate nitrogen |
| DOC | Dissolved organic carbon |
| glu-eq | glucose equivalents |
| DAPI | 4′,6-diamidino-2-phenylindole |
| CTC | 5-Cyano-2,3-ditolyl tetrazolium chloride |
| ASVs | amplicon sequence variants |
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Frantz, C.M.; Crump, B.C.; Carpenter, S.; Firth, E.; Orellana, M.V.; Light, B.; Junge, K. Microbial Ecology of Rotten Sea Ice: Implications for Arctic Carbon Cycling with Global Warming. Microorganisms 2026, 14, 482. https://doi.org/10.3390/microorganisms14020482
Frantz CM, Crump BC, Carpenter S, Firth E, Orellana MV, Light B, Junge K. Microbial Ecology of Rotten Sea Ice: Implications for Arctic Carbon Cycling with Global Warming. Microorganisms. 2026; 14(2):482. https://doi.org/10.3390/microorganisms14020482
Chicago/Turabian StyleFrantz, Carie M., Byron C. Crump, Shelly Carpenter, Erin Firth, Mónica V. Orellana, Bonnie Light, and Karen Junge. 2026. "Microbial Ecology of Rotten Sea Ice: Implications for Arctic Carbon Cycling with Global Warming" Microorganisms 14, no. 2: 482. https://doi.org/10.3390/microorganisms14020482
APA StyleFrantz, C. M., Crump, B. C., Carpenter, S., Firth, E., Orellana, M. V., Light, B., & Junge, K. (2026). Microbial Ecology of Rotten Sea Ice: Implications for Arctic Carbon Cycling with Global Warming. Microorganisms, 14(2), 482. https://doi.org/10.3390/microorganisms14020482

