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Genes, Volume 14, Issue 9

September 2023 - 169 articles

Cover Story: The epigenetic clock uses DNA methylation to calculate the metric of “epigenetic age”. Epigenetic age acceleration (epigenetic > chronological age) has been repeatedly linked to pediatric asthma and allergic disease, demonstrating its potential as a diagnostic biomarker. However, questions remain about the accuracy and utility of epigenetic clocks in children. This review examines the most used current epigenetic clocks and details the associations between epigenetic age acceleration and asthma/allergic disease. We explore the potential of the epigenetic clock as a biomarker for asthma and discuss the need for a pediatric epigenetic clock that is accurate in blood samples in order to maximize the utility of this powerful tool. View this paper
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Articles (169)

  • Article
  • Open Access
10 Citations
3,909 Views
11 Pages

20 September 2023

Cancer metastasis accounts for approximately 90% of cancer deaths, and elucidating markers in metastasis is the first step in its prevention. To characterize metastasis marker genes (MGs) of breast cancer, XGBoost models that classify metastasis stat...

  • Article
  • Open Access
5 Citations
3,098 Views
21 Pages

Lung and Heart Biology of the Dp16 Mouse Model of down Syndrome: Implications for Studying Cardiopulmonary Disease

  • Kelley L. Colvin,
  • Kathleen Nguyen,
  • Katie L. Boncella,
  • Desiree M. Goodman,
  • Robert J. Elliott,
  • Julie W. Harral,
  • Jill Bilodeaux,
  • Bradford J. Smith and
  • Michael E. Yeager

19 September 2023

(1) Background: We sought to investigate the baseline lung and heart biology of the Dp16 mouse model of Down syndrome (DS) as a prelude to the investigation of recurrent respiratory tract infection. (2) Methods: In controls vs. Dp16 mice, we compared...

  • Article
  • Open Access
7 Citations
4,559 Views
15 Pages

Alpha-Ketoglutarate Regulates Tnfrsf12a/Fn14 Expression via Histone Modification and Prevents Cancer-Induced Cachexia

  • Bryan I. Ruiz,
  • Xazmin H. Lowman,
  • Ying Yang,
  • Qi Fan,
  • Tianhong Wang,
  • Hongmei Wu,
  • Eric A. Hanse and
  • Mei Kong

19 September 2023

Previous studies have shown that inhibition of TNF family member FN14 (gene: TNFRSF12A) in colon tumors decreases inflammatory cytokine expression and mitigates cancer-induced cachexia. However, the molecular mechanisms underlying the regulation of F...

  • Feature Paper
  • Article
  • Open Access
4 Citations
2,668 Views
15 Pages

Expanding the Natural History of SNORD118-Related Ribosomopathy: Hints from an Early-Diagnosed Patient with Leukoencephalopathy with Calcifications and Cysts and Overview of the Literature

  • Davide Politano,
  • Guido Catalano,
  • Elena Pezzotti,
  • Costanza Varesio,
  • Fabio Sirchia,
  • Antonella Casella,
  • Elisa Rognone,
  • Anna Pichiecchio,
  • Renato Borgatti and
  • Simona Orcesi

19 September 2023

Leukoencephalopathy with calcifications and cysts (LCC) is a rare autosomal recessive disorder showing a pediatric or adult onset. First described in 1996 by Labrune and colleagues, it was only in 2016 that bi-allelic variants in a non-protein coding...

  • Article
  • Open Access
1 Citations
2,362 Views
11 Pages

Genome-Wide Association Mapping of Processing Quality Traits in Common Wheat (Triticum aestivum L.)

  • Hui Jin,
  • Yuanyuan Tian,
  • Yan Zhang,
  • Rui Zhang,
  • Haibin Zhao,
  • Xue Yang,
  • Xizhang Song,
  • Yordan Dimitrov,
  • Yu-e Wu and
  • Qiang Gao
  • + 3 authors

18 September 2023

Processing quality is an important economic wheat trait. The marker-assisted selection (MAS) method plays a vital role in accelerating genetic improvement of processing quality. In the present study, processing quality in a panel of 165 cultivars gro...

  • Article
  • Open Access
7 Citations
3,179 Views
15 Pages

Association Mapping of Candidate Genes Associated with Iron and Zinc Content in Rice (Oryza sativa L.) Grains

  • Chance Bahati Bukomarhe,
  • Paul Kitenge Kimwemwe,
  • Stephen Mwangi Githiri,
  • Edward George Mamati,
  • Wilson Kimani,
  • Collins Mutai,
  • Fredrick Nganga,
  • Paul-Martin Dontsop Nguezet,
  • Jacob Mignouna and
  • René Mushizi Civava
  • + 1 author

18 September 2023

Micronutrient deficiencies, particularly of iron (Fe) and zinc (Zn), in the diet contribute to health issues and hidden hunger. Enhancing the Fe and Zn content in globally staple food crops like rice is necessary to address food malnutrition. A Genom...

  • Article
  • Open Access
2 Citations
2,599 Views
10 Pages

Association of Cognitive Polygenic Index and Cognitive Performance with Age in Cognitively Healthy Adults

  • Angeliki Tsapanou,
  • Margaret Gacheru,
  • Seonjoo Lee,
  • Niki Mourtzi,
  • Yunglin Gazes,
  • Christian Habeck,
  • Daniel W. Belsky and
  • Yaakov Stern

18 September 2023

Genome-wide association studies have discovered common genetic variants associated with cognitive performance. Polygenic scores that summarize these discoveries explain up to 10% of the variance in cognitive test performance in samples of adults. How...

  • Article
  • Open Access
2,852 Views
17 Pages

Non-Random Enrichment of Single-Nucleotide Polymorphisms Associated with Clopidogrel Resistance within Risk Loci Linked to the Severity of Underlying Cardiovascular Diseases: The Role of Admixture

  • Mariangeli Monero-Paredes,
  • Roberto Feliu-Maldonado,
  • Kelvin Carrasquillo-Carrion,
  • Pablo Gonzalez,
  • Igor B. Rogozin,
  • Abiel Roche-Lima and
  • Jorge Duconge

17 September 2023

Cardiovascular disease (CVD) is one of the leading causes of death in Puerto Rico, where clopidogrel is commonly prescribed to prevent ischemic events. Genetic contributors to both a poor clopidogrel response and the severity of CVD have been identif...

  • Article
  • Open Access
2 Citations
2,950 Views
24 Pages

Quantitative Trait Locus Analysis of Hessian Fly Resistance in Soft Red Winter Wheat

  • John W. Bagwell,
  • Madhav Subedi,
  • Suraj Sapkota,
  • Benjamin Lopez,
  • Bikash Ghimire,
  • Zhenbang Chen,
  • G. David Buntin,
  • Bochra A. Bahri and
  • Mohamed Mergoum

17 September 2023

The Hessian fly (HF) is an invasive insect that has caused millions of dollars in yield losses to southeastern US wheat farms. Genetic resistance is the most sustainable solution to control HF. However, emerging biotypes are quickly overcoming resist...

  • Review
  • Open Access
12 Citations
2,783 Views
7 Pages

17 September 2023

Introduction: The independent effect of exercise on liver histology in non-alcoholic fatty liver disease (NAFLD) remains unclear. As such, we conducted a systematic review and meta-analysis of the effect of exercise alone on histological endpoints in...

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Genes - ISSN 2073-4425