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International Journal of Molecular Sciences, Volume 13, Issue 8

2012 August - 82 articles

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Articles (82)

  • Article
  • Open Access
28 Citations
7,971 Views
14 Pages

23 August 2012

Secreted clusterin (sCLU) has been shown to be overexpressed in metastatic hepatocellular carcinoma (HCC) tissue, and its overexpression in HCC cells increases cell migration and the formation of liver metastatic tumor nodules in vivo. In this study,...

  • Review
  • Open Access
54 Citations
10,748 Views
22 Pages

Recent Advances on the Neuroprotective Potential of Antioxidants in Experimental Models of Parkinson’s Disease

  • Sushruta Koppula,
  • Hemant Kumar,
  • Sandeep Vasant More,
  • Byung Wook Kim,
  • In Su Kim and
  • Dong-Kug Choi

23 August 2012

Parkinson’s disease (PD), a neurodegenerative movement disorder of the central nervous system (CNS) is characterized by a progressive loss of dopaminergic neurons in the substantia nigra pars compacta region of the midbrain. Although the etiology of...

  • Article
  • Open Access
53 Citations
10,081 Views
17 Pages

23 August 2012

The objective of the study was to optimize the nutrition sources in a culture medium for the production of xylanase from Penicillium sp.WX-Z1 using Plackett-Burman design and Box-Behnken design. The Plackett-Burman multifactorial design was first emp...

  • Review
  • Open Access
49 Citations
9,438 Views
13 Pages

23 August 2012

New evidence has emerged over the last decade indicating that oligodendrocyte injury in multiple sclerosis (MS) is not a single unified phenomenon but rather a spectrum of processes ranging from massive immune destruction to a subtle cell death in th...

  • Article
  • Open Access
38 Citations
8,255 Views
18 Pages

A Novel Cyclodextrin Glycosyltransferase from Alkaliphilic Amphibacillus sp. NPST-10: Purification and Properties

  • Abdelnasser S. S. Ibrahim,
  • Ali A. Al-Salamah,
  • Mohamed A. El-Tayeb,
  • Yahya B. El-Badawi and
  • Garabed Antranikian

22 August 2012

Screening for cyclodextrin glycosyltransferase (CGTase)-producing alkaliphilic bacteria from samples collected from hyper saline soda lakes (Wadi Natrun Valley, Egypt), resulted in isolation of potent CGTase producing alkaliphilic bacterium, termed N...

  • Article
  • Open Access
45 Citations
8,148 Views
14 Pages

Gender Related Differences in Kidney Injury Induced by Mercury

  • María H. Hazelhoff,
  • Romina P. Bulacio and
  • Adriana M. Torres

22 August 2012

The aim of this study was to determine if there are sex-related differences in the acute kidney injury induced by HgCl2 since female rats express lower levels of renal Oat1 and Oat3 (transporters involved in renal uptake of mercury) as compared with...

  • Review
  • Open Access
49 Citations
13,444 Views
16 Pages

Characterization of Aptamer-Protein Complexes by X-ray Crystallography and Alternative Approaches

  • Vincent J. B. Ruigrok,
  • Mark Levisson,
  • Johan Hekelaar,
  • Hauke Smidt,
  • Bauke W. Dijkstra and
  • John Van der Oost

22 August 2012

Aptamers are oligonucleotide ligands, either RNA or ssDNA, selected for high-affinity binding to molecular targets, such as small organic molecules, proteins or whole microorganisms. While reports of new aptamers are numerous, characterization of the...

  • Article
  • Open Access
21 Citations
9,251 Views
15 Pages

Direct Observation of Protein Microcrystals in Crystallization Buffer by Atmospheric Scanning Electron Microscopy

  • Yuusuke Maruyama,
  • Tatsuhiko Ebihara,
  • Hidetoshi Nishiyama,
  • Yuji Konyuba,
  • Miki Senda,
  • Takuro Numaga-Tomita,
  • Toshiya Senda,
  • Mitsuo Suga and
  • Chikara Sato

22 August 2012

X-ray crystallography requires high quality crystals above a given size. This requirement not only limits the proteins to be analyzed, but also reduces the speed of the structure determination. Indeed, the tertiary structures of many physiologically...

  • Review
  • Open Access
32 Citations
9,504 Views
15 Pages

Deciphering the Molecular Nature of Ovarian Cancer Biomarker CA125

  • Florian Weiland,
  • Karina Martin,
  • Martin K. Oehler and
  • Peter Hoffmann

22 August 2012

The ovarian cancer biomarker CA125 has been extensively investigated over the last 30 years. The knowledge about the exact molecular nature of this protein, however, remains fragmented. This review provides an overview of the structural research rega...

  • Article
  • Open Access
25 Citations
6,845 Views
11 Pages

22 August 2012

Mytilus coruscus (family Mytilidae) is one of the most important marine shellfish species in Korea. During the past few decades, this species has become endangered due to the loss of habitats and overfishing. Despite this species’ importance, informa...

  • Article
  • Open Access
1 Citations
6,612 Views
14 Pages

21 August 2012

Mucin 16 (MUC16) is a type I transmembrane protein, the extracellular portion of which is shed after proteolytic degradation and is denoted as CA125 antigen, a well known tumor marker for ovarian cancer. Regarding its polypeptide and glycan structure...

  • Article
  • Open Access
9 Citations
5,603 Views
9 Pages

21 August 2012

Density functional theory has been employed to investigate the deformation behaviors of glassy Fe-Si-B model systems prepared by ab initio molecular dynamics. The atomistic deformation defects which are closely related to the local dilation volumes o...

  • Article
  • Open Access
10 Citations
6,780 Views
14 Pages

21 August 2012

Barley (Hordeum vulgare L.) is an important cereal crop grown for both the feed and malting industries. The allelic dwarfing gene sdw1/denso has been used throughout the world to develop commercial barley varieties. Proteomic analysis offers a new ap...

  • Article
  • Open Access
2 Citations
5,796 Views
8 Pages

An iRGD Based Strategy to Study Electrochemically the Species Inside a Cell

  • Limin Ning,
  • Xiaoxi Li,
  • Xiaorong Ding,
  • Yongmei Yin and
  • Genxi Li

21 August 2012

This paper reports a method for electrical communication between the inner part of cells and an electrode with the help of iRGD peptide. Due to the enhancement of the cell penetration caused by iRGD peptide, DNA molecules, previously modified on a go...

  • Article
  • Open Access
8 Citations
6,505 Views
9 Pages

21 August 2012

A naturally occurring enynyl-benzenoid, benzocamphorin F (1), from the edible fungus Taiwanofungus camphoratus (Antrodia camphorata) was characterized by comprehensive spectral analysis. It displays anti-inflammatory bioactivity and is valuable for f...

  • Article
  • Open Access
8 Citations
7,468 Views
20 Pages

21 August 2012

The impact of both the uplift of the Qinghai-Tibetan Plateau (QTP) and the separation of the Taiwan and Hainan Islands on the evolution of the fauna and flora in adjacent regions has been a topic of considerable interest. Mollitrichosiphum is a polyp...

  • Review
  • Open Access
113 Citations
13,259 Views
17 Pages

21 August 2012

Transforming growth factor-beta-induced protein (TGFBI, also known as βig-H3 and keratoepithelin) is an extracellular matrix protein that plays a role in a wide range of physiological and pathological conditions including diabetes, corneal dystrophy...

  • Review
  • Open Access
198 Citations
21,635 Views
27 Pages

The Role of Free Radicals in the Aging Brain and Parkinson’s Disease: Convergence and Parallelism

  • Hemant Kumar,
  • Hyung-Woo Lim,
  • Sandeep Vasant More,
  • Byung-Wook Kim,
  • Sushruta Koppula,
  • In Su Kim and
  • Dong-Kug Choi

21 August 2012

Free radical production and their targeted action on biomolecules have roles in aging and age-related disorders such as Parkinson’s disease (PD). There is an age-associated increase in oxidative damage to the brain, and aging is considered a risk fac...

  • Article
  • Open Access
3 Citations
5,946 Views
9 Pages

An Investigation on the Thermal Effusivity of Nanofluids Containing Al2O3 and CuO Nanoparticles

  • Monir Noroozi,
  • Azmi Zakaria,
  • Mohd Maarof Moksin and
  • Zaidan Abd Wahab

20 August 2012

The thermal effusivity of Al2O3 and CuO nanofluids in different base fluids, i.e., deionized water, ethylene glycol and olive oil were investigated. The nanofluids, nanoparticles dispersed in base fluids; were prepared by mixing Al2O3, CuO nanopowder...

  • Article
  • Open Access
24 Citations
7,676 Views
9 Pages

20 August 2012

Homoisoflavanone, sappanone A, was isolated from Caesalpinia sappan and proven to dose-dependently inhibit both melanogenesis and cellular tyrosinase activity via repressing tyrosinase gene expression in mouse B16 melanoma cells. To our knowledge, sa...

  • Review
  • Open Access
11 Citations
7,958 Views
19 Pages

Macromolecule-Assisted de novo Protein Folding

  • Seong Il Choi,
  • Ahyun Son,
  • Keo-Heun Lim,
  • Hotcherl Jeong and
  • Baik L. Seong

20 August 2012

In the processes of protein synthesis and folding, newly synthesized polypeptides are tightly connected to the macromolecules, such as ribosomes, lipid bilayers, or cotranslationally folded domains in multidomain proteins, representing a hallmark of...

  • Review
  • Open Access
23 Citations
9,965 Views
28 Pages

17 August 2012

Non-coding RNAs are dominant in the genomic output of the higher organisms being not simply occasional transcripts with idiosyncratic functions, but constituting an extensive regulatory network. Among all the species of non-coding RNAs, small non-cod...

  • Article
  • Open Access
18 Citations
7,221 Views
9 Pages

17 August 2012

Melt crystallization of ibuprofen was studied to understand the effects of humidity and surfaces. The molecular self-assembly during the amorphous-to-crystal transformation was examined in terms of the nucleation and growth of the crystals. The cryst...

  • Article
  • Open Access
44 Citations
8,817 Views
11 Pages

Comparative Characterization of Total Flavonol Glycosides and Terpene Lactones at Different Ages, from Different Cultivation Sources and Genders of Ginkgo biloba Leaves

  • Xin Yao,
  • Erxin Shang,
  • Guisheng Zhou,
  • Yuping Tang,
  • Sheng Guo,
  • Shulan Su,
  • Chun Jin,
  • Dawei Qian,
  • Yong Qin and
  • Jin-Ao Duan

17 August 2012

The extract from Ginkgo biloba leaves has become a very popular plant medicine and herbal supplement for its potential benefit in alleviating symptoms associated with peripheral vascular disease, dementia, asthma and tinnitus. Most research on G. bil...

  • Review
  • Open Access
47 Citations
14,389 Views
20 Pages

Molecular Tools for Exploring Polyploid Genomes in Plants

  • Riccardo Aversano,
  • Maria Raffaella Ercolano,
  • Immacolata Caruso,
  • Carlo Fasano,
  • Daniele Rosellini and
  • Domenico Carputo

17 August 2012

Polyploidy is a very common phenomenon in the plant kingdom, where even diploid species are often described as paleopolyploids. The polyploid condition may bring about several advantages compared to the diploid state. Polyploids often show phenotypes...

  • Article
  • Open Access
14 Citations
6,302 Views
14 Pages

17 August 2012

This study examined the effects of rice bran oil (RBO) on mouse intestinal microbiota and urinary isoflavonoids. Dietary RBO affects intestinal cholesterol absorption. Intestinal microbiota seem to play an important role in isoflavone metabolism. We...

  • Article
  • Open Access
20 Citations
9,768 Views
19 Pages

Structural and Oxidative Changes in the Kidney of Crucian Carp Induced by Silicon-Based Quantum Dots

  • Sorina Nicoleta Petrache,
  • Loredana Stanca,
  • Andreea Iren Serban,
  • Cornelia Sima,
  • Andreia Cristina Staicu,
  • Maria Cristina Munteanu,
  • Marieta Costache,
  • Radu Burlacu,
  • Otilia Zarnescu and
  • Anca Dinischiotu

16 August 2012

Silicon-based quantum dots were intraperitoneally injected in Carassius auratus gibelio specimens and, over one week, the effects on renal tissue were investigated by following their distribution and histological effects, as well as antioxidative sys...

  • Article
  • Open Access
8 Citations
6,776 Views
17 Pages

16 August 2012

Acquired resistance to drugs commonly used for lymphoma treatment poses a significant barrier to improving lymphoma patient survival. Previous work with a lymphoma tissue culture model indicates that selection for resistance to oxidative stress confe...

  • Article
  • Open Access
4 Citations
5,875 Views
7 Pages

Bone Marrow-Derived HipOP Cell Population Is Markedly Enriched in Osteoprogenitors

  • Shousaku Itoh,
  • Kenta Matsushita,
  • Shun Ikeda,
  • Yumiko Yamamoto,
  • Yukako Yamauchi,
  • Seisuke Yoshioka,
  • Reiko Yamamoto,
  • Shigeyuki Ebisu,
  • Mikako Hayashi and
  • Jane E. Aubin

16 August 2012

We recently succeeded in purifying a novel multipotential progenitor or stem cell population from bone marrow stromal cells (BMSCs). This population exhibited a very high frequency of colony forming units-osteoblast (CFU-O; 100 times higher than in B...

  • Article
  • Open Access
48 Citations
8,173 Views
21 Pages

16 August 2012

The complete 15,413-bp mitochondrial genome (mitogenome) of Sesamia inferens (Walker) (Lepidoptera: Noctuidae) was sequenced and compared with those of four other noctuid moths. All of the mitogenomes analyzed displayed similar characteristics with r...

  • Article
  • Open Access
164 Citations
13,974 Views
11 Pages

16 August 2012

The main objective of this research was to appraise the changes in mineral content and antioxidant attributes of Portulaca oleracea over different growth stages. The antioxidant activity was measured using 1,1-diphenyl-2-picrylhydrazyl (DPPH), ferric...

  • Review
  • Open Access
377 Citations
29,201 Views
11 Pages

15 August 2012

The epigenetic effects on DNA methylation, histone modification, and expression of non-coding RNAs (including microRNAs) of environmental chemicals such as bisphenol A (BPA) and phthalates have expanded our understanding of the etiology of human comp...

  • Article
  • Open Access
14 Citations
10,023 Views
22 Pages

The Opuntia streptacantha OpsHSP18 Gene Confers Salt and Osmotic Stress Tolerance in Arabidopsis thaliana

  • Silvia Salas-Muñoz,
  • Gracia Gómez-Anduro,
  • Pablo Delgado-Sánchez,
  • Margarita Rodríguez-Kessler and
  • Juan Francisco Jiménez-Bremont

15 August 2012

Abiotic stress limits seed germination, plant growth, flowering and fruit quality, causing economic decrease. Small Heat Shock Proteins (sHSPs) are chaperons with roles in stress tolerance. Herein, we report the functional characterization of a cytos...

  • Article
  • Open Access
17 Citations
9,150 Views
17 Pages

Helicobacter pylori Disrupts Host Cell Membranes, Initiating a Repair Response and Cell Proliferation

  • Li-Ling Lin,
  • Hsuan-Cheng Huang,
  • Satoshi Ogihara,
  • Jin-Town Wang,
  • Meng-Chuan Wu,
  • Paul L. McNeil,
  • Chiung-Nien Chen and
  • Hsueh-Fen Juan

15 August 2012

Helicobacter pylori (H. pylori), the human stomach pathogen, lives on the inner surface of the stomach and causes chronic gastritis, peptic ulcer, and gastric cancer. Plasma membrane repair response is a matter of life and death for human cells again...

  • Article
  • Open Access
56 Citations
8,056 Views
19 Pages

Quantitative Expression of C-Type Lectin Receptors in Humans and Mice

  • Maciej Lech,
  • Heni Eka Susanti,
  • Christoph Römmele,
  • Regina Gröbmayr,
  • Roman Günthner and
  • Hans-Joachim Anders

14 August 2012

C-type lectin receptors and their adaptor molecules are involved in the recognition of glycosylated self-antigens and pathogens. However, little is known about the species- and organ-specific expression profiles of these molecules. We therefore deter...

  • Article
  • Open Access
15 Citations
10,768 Views
11 Pages

Cyclodextrin-Based [1]Rotaxanes on Gold Nanoparticles

  • Liangliang Zhu,
  • Hong Yan and
  • Yanli Zhao

14 August 2012

Transformation of mechanically interlocked molecules (e.g., rotaxanes and catenanes) into nanoscale materials or devices is an important step towards their real applications. In our current work, an azobenzene-modified β-cyclodextrin (β-CD) derivativ...

  • Review
  • Open Access
80 Citations
9,971 Views
26 Pages

Blood Glutamate Scavenging: Insight into Neuroprotection

  • Akiva Leibowitz,
  • Matthew Boyko,
  • Yoram Shapira and
  • Alexander Zlotnik

13 August 2012

Brain insults are characterized by a multitude of complex processes, of which glutamate release plays a major role. Deleterious excess of glutamate in the brain’s extracellular fluids stimulates glutamate receptors, which in turn lead to cell swellin...

  • Article
  • Open Access
26 Citations
7,975 Views
24 Pages

2,3-Dihydro-1H-cyclopenta[b]quinoline Derivatives as Acetylcholinesterase Inhibitors—Synthesis, Radiolabeling and Biodistribution

  • Paweł Szymański,
  • Alice Lázničková,
  • Milan Lázniček,
  • Marek Bajda,
  • Barbara Malawska,
  • Magdalena Markowicz and
  • Elżbieta Mikiciuk-Olasik

13 August 2012

In the present study we describe the synthesis and biological assessment of new tacrine analogs in the course of inhibition of acetylcholinesterase. The obtained molecules were synthesized in a condensation reaction between activated 6-BOC-hydrazinop...

  • Article
  • Open Access
30 Citations
8,988 Views
22 Pages

New Biofuel Integrating Glycerol into Its Composition Through the Use of Covalent Immobilized Pig Pancreatic Lipase

  • Diego Luna,
  • Alejandro Posadillo,
  • Verónica Caballero,
  • Cristóbal Verdugo,
  • Felipa M. Bautista,
  • Antonio A. Romero,
  • Enrique D. Sancho,
  • Carlos Luna and
  • Juan Calero

13 August 2012

By using 1,3-specific Pig Pancreatic lipase (EC 3.1.1.3 or PPL), covalently immobilized on AlPO4/Sepiolite support as biocatalyst, a new second-generation biodiesel was obtained in the transesterification reaction of sunflower oil with ethanol and ot...

  • Article
  • Open Access
320 Citations
25,909 Views
12 Pages

10 August 2012

The majority of ovarian cancer patients present with advanced disease and despite aggressive treatment, prognosis remains poor. Significant improvement in ovarian cancer survival will require the development of more effective molecularly targeted the...

  • Article
  • Open Access
7,217 Views
9 Pages

Synthesis of Triptorelin Lactate Catalyzed by Lipase in Organic Media

  • Hong Zhuang,
  • Zhi Wang,
  • Jiaxin Wang,
  • Hong Zhang,
  • Erna Xun,
  • Ge Chen,
  • Hong Yue,
  • Ning Tang and
  • Lei Wang

10 August 2012

Triptorelin lactate was successfully synthesized by porcine pancreatic lipase (PPL) in organic solvents. The effects of acyl donor, substrate ratio, organic solvent, temperature, and water activity were investigated. Under the optimum conditions, a y...

  • Article
  • Open Access
25 Citations
6,970 Views
12 Pages

Combined Phosphatase and Tensin Homolog (PTEN) Loss and Fatty Acid Synthase (FAS) Overexpression Worsens the Prognosis of Chinese Patients with Hepatocellular Carcinoma

  • Xuehua Zhu,
  • Xia Qin,
  • Maogui Fei,
  • Wenmin Hou,
  • Joel Greshock,
  • Kurtis E. Bachman,
  • Richard Wooster,
  • Jiuhong Kang and
  • Crystal Ying Qin

10 August 2012

We aimed to investigate the expression pattern of phosphatase and tensin homolog (PTEN), to evaluate the relationship between PTEN expression and clinicopathological characteristics, including fatty acid synthase (FAS) expression, and to determine th...

  • Article
  • Open Access
28 Citations
9,633 Views
18 Pages

RNA-Mediated Gene Silencing Signals Are Not Graft Transmissible from the Rootstock to the Scion in Greenhouse-Grown Apple Plants Malus sp.

  • Henryk Flachowsky,
  • Conny Tränkner,
  • Iris Szankowski,
  • Sascha Waidmann,
  • Magda-Viola Hanke,
  • Dieter Treutter and
  • Thilo C. Fischer

10 August 2012

RNA silencing describes the sequence specific degradation of RNA targets. Silencing is a non-cell autonomous event that is graft transmissible in different plant species. The present study is the first report on systemic acquired dsRNA-mediated gene...

  • Article
  • Open Access
7 Citations
7,205 Views
12 Pages

Effects of a Buried Cysteine-To-Serine Mutation on Yeast Triosephosphate Isomerase Structure and Stability

  • Alejandra Hernández-Santoyo,
  • Lenin Domínguez-Ramírez,
  • César A. Reyes-López,
  • Edith González-Mondragón,
  • Andrés Hernández-Arana and
  • Adela Rodríguez-Romero

10 August 2012

All the members of the triosephosphate isomerase (TIM) family possess a cystein residue (Cys126) located near the catalytically essential Glu165. The evolutionarily conserved Cys126, however, does not seem to play a significant role in the catalytic...

  • Review
  • Open Access
22 Citations
8,096 Views
19 Pages

Förster Resonance Energy Transfer (FRET) Correlates of Altered Subunit Stoichiometry in Cys-Loop Receptors, Exemplified by Nicotinic α4β2

  • Rahul Srinivasan,
  • Christopher I. Richards,
  • Crystal Dilworth,
  • Fraser J. Moss,
  • Dennis A. Dougherty and
  • Henry A. Lester

10 August 2012

We provide a theory for employing Förster resonance energy transfer (FRET) measurements to determine altered heteropentameric ion channel stoichiometries in intracellular compartments of living cells. We simulate FRET within nicotinic receptors (nACh...

  • Article
  • Open Access
333 Citations
20,500 Views
19 Pages

9 August 2012

A green synthesis route for the production of silver nanoparticles using methanol extract from Solanum xanthocarpum berry (SXE) is reported in the present investigation. Silver nanoparticles (AgNps), having a surface plasmon resonance (SPR) band cent...

  • Article
  • Open Access
28 Citations
10,108 Views
17 Pages

Methods for Identification of CA125 from Ovarian Cancer Ascites by High Resolution Mass Spectrometry

  • Florian Weiland,
  • Katarina Fritz,
  • Martin K. Oehler and
  • Peter Hoffmann

9 August 2012

CA125 is the most widely used tumour marker in ovarian cancer with unsatisfactory sensitivity and specificity especially at early stage. It is quantified by antibody-based immunoassays; however different molecular weight isoforms have been described...

  • Article
  • Open Access
37 Citations
6,367 Views
13 Pages

Acute Effect of Ghrelin on Ischemia/Reperfusion Injury in the Rat Spinal Cord

  • Qin Zhang,
  • Chen Huang,
  • Bin Meng,
  • Tiansi Tang,
  • Qin Shi and
  • Huilin Yang

8 August 2012

Ghrelin, a 28-amino acid peptide, is mainly secreted by the stomach. Ghrelin has been shown to have neuroprotective effects. However, whether ghrelin protects the spinal cord from ischemia/reperfusion (I/R) injury is unknown. To investigate this, 60...

  • Article
  • Open Access
89 Citations
10,558 Views
16 Pages

Wogonin Induces Reactive Oxygen Species Production and Cell Apoptosis in Human Glioma Cancer Cells

  • Cheng-Fang Tsai,
  • Wei-Lan Yeh,
  • Ssu Ming Huang,
  • Tzu-Wei Tan and
  • Dah-Yuu Lu

8 August 2012

Glioma is the most common primary adult brain tumor with poor prognosis because of the ease of spreading tumor cells to other regions of the brain. Cell apoptosis is frequently targeted for developing anti-cancer drugs. In the present study, we have...

  • Article
  • Open Access
4 Citations
5,754 Views
7 Pages

Development of Microsatellite Markers Using Pyrosequencing in Galium trifidum (Rubiaceae), a Rare Species in Central Europe

  • Monika Szczecińska,
  • Mirosław Kwaśniewski,
  • Jakub Sawicki,
  • Karolina Chwiałkowska,
  • Kamil Szandar and
  • Włodzimierz Pisarek

8 August 2012

We identify a large number of microsatellites from Galium trfidum, a plant species considered rare and endangered in Central and Western Europe. Using a combination of a total enriched genomic library and small-scale 454 pyrosequencing, we determined...

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Int. J. Mol. Sci. - ISSN 1422-0067