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Search Results (366)

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Keywords = sugar and organic acid metabolism

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19 pages, 1444 KB  
Article
Rosa x hybrida: A New Tool for Functional Food Development with Triple-Negative Breast Antitumoral Implications
by Lorenzo Rivas-Garcia, Tamara Y. Forbes-Hernández, Pablo Cristóbal-Cueto, David Tébar-García, Alfonso Salinas-Castillo, Ana Cristina Abreu, Ignacio Fernández, Pilar Aranda, Juan Llopis, Elena Nebot-Valenzuela, Eva M. Galan-Moya and Cristina Sánchez-González
Int. J. Mol. Sci. 2026, 27(2), 907; https://doi.org/10.3390/ijms27020907 - 16 Jan 2026
Abstract
Edible flowers have garnered increasing attention due to their high content of bioactive compounds, making them promising candidates for biomedical and functional food applications. This work evaluated the metabolomic data of fresh Rosa x hybrida petals, revealing seven types of metabolites, including amino [...] Read more.
Edible flowers have garnered increasing attention due to their high content of bioactive compounds, making them promising candidates for biomedical and functional food applications. This work evaluated the metabolomic data of fresh Rosa x hybrida petals, revealing seven types of metabolites, including amino acids, organic acids, vitamins, sugars, phenolic acids, and flavonoids. Notably, quercetin, kaempferol and their derivatives were the main flavonoids determined. Furthermore, in vitro studies were conducted to evaluate the potential antiproliferative effects against triple-negative breast cancer (TNBC). Thus, the methanolic extract derived from Rosa x hybrida petals demonstrated significant antitumoral activity against both sensitive and resistant TNBC cells, as evidenced by reduced MTT metabolization, colony formation, and wound healing activity. Furthermore, the cell death mechanism associated with the petal extract was studied. The antiproliferative activity was mediated by reactive oxygen species generation, triggering cell death mechanisms such as apoptosis and autophagy. In conclusion, these results propose Rosa x hybrida could be a new tool for nutraceuticals and functional food production. Full article
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22 pages, 2367 KB  
Article
Harnessing the Potential of a Secondary Metabolite-Based Formulation for the Post-Harvest Disease Management and Shelf Life Extension of Banana
by Karma Beer, T. Damodaran, M. Muthukumar, Prasenjit Debnath, Akath Singh and Maneesh Mishra
Metabolites 2026, 16(1), 22; https://doi.org/10.3390/metabo16010022 - 25 Dec 2025
Viewed by 323
Abstract
Background: Post-harvest losses in bananas, particularly due to diseases such as anthracnose and stem-end rot, significantly limit their storage life and marketability. Developing effective and non-toxic treatments to prolong the shelf life of fruits while maintaining quality is crucial inenabling long-distance transport and [...] Read more.
Background: Post-harvest losses in bananas, particularly due to diseases such as anthracnose and stem-end rot, significantly limit their storage life and marketability. Developing effective and non-toxic treatments to prolong the shelf life of fruits while maintaining quality is crucial inenabling long-distance transport and facilitating exports. Methods: The most popular and commercial banana variety, ‘Grand Naine’, was treated with a proprietary secondary metabolite-based formulation (this refers to a solution containing natural compounds produced by living organisms, which are not directly involved in growth but can influence various biological processes, such as antimicrobial activity) and stored under cold conditions at 13 °C, using vacuum packaging (a method where air is removed from the packaging to reduce spoilage and prolong freshness). Untreated fruits were considered as controls, meaning that they were not subjected to the treatment and served as a baseline for comparison. Shelf life-related parameters such as ethylene production (a plant hormone responsible for triggering fruit ripening), ACC oxidase activity (an enzyme central to ethylene synthesis), respiration rate (the rate at which fruit consumes oxygen and produces carbon dioxide), firmness, total soluble solids (TSS; measures the sugar content in fruit), acidity, and metabolic composition were assessed, including indices of susceptibility to disease. These measurements were taken at regular intervals for both treated and control fruits. Results: Secondary metabolite-treated bananas maintained quality for 45 days, staying free from anthracnose and stem-end rot. Control fruits showed over-ripening and an 11.6% percent disease index (PDI). Treated fruits had lower ethylene production (7.80 μg/kg/s vs. 10.03 μg/kg/s in controls), reduced ACC oxidase activity, and a slower respiration rate, delaying ripening. They also had greater firmness (1.45 kg/cm2), optimal TSS (13.5 °Brix), balanced acidity (0.58%), and increased flavonoid and antioxidant levels compared to controls. Conclusions: Secondary metabolite-based treatment, combined with cold storage and vacuum packaging, extended banana shelf life to 45 days, minimized disease, and preserved fruit quality. This approach substantially reduced post-harvest losses, demonstrating export potential through extended storage. Full article
(This article belongs to the Section Food Metabolomics)
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19 pages, 1159 KB  
Article
Assessing the Impact of Pontederia crassipes Extracts on the Saprophytic Soil Fungus Trametes versicolor: Implications for Agricultural Use
by Cátia Venâncio, Ana Ramisote, Pedro Pato and Carla Patinha
Agronomy 2025, 15(12), 2921; https://doi.org/10.3390/agronomy15122921 - 18 Dec 2025
Viewed by 366
Abstract
Invasive species are a recurring global problem, and the water hyacinth (Pontederia crassipes) is a well-known example. Various strategies have been explored to manage its spread, including its use as an agricultural amendment. However, when P. crassipes biomass is incorporated into [...] Read more.
Invasive species are a recurring global problem, and the water hyacinth (Pontederia crassipes) is a well-known example. Various strategies have been explored to manage its spread, including its use as an agricultural amendment. However, when P. crassipes biomass is incorporated into soil and undergoes degradation, it may increase soil conductivity and promote metal leaching, potentially affecting soil biota, particularly microbiota. Saprophytic fungi play a key role in the decomposition and renewal of organic matter, and their resilience to stressors is crucial for maintaining soil function. Thus, the aim of this study was to evaluate the effects of P. crassipes biomass extracts on the saprophytic fungus Trametes versicolor by evaluating fungal growth and metabolic changes [including sugar content, phosphatase enzymatic activity, and reactive oxygen species (ROS) production]. The fungus was exposed for 8 days to a dilution series of extracts (100%—undiluted, to 3.13%) prepared from P. crassipes biomass collected at five locations in Portuguese wetlands. Two sites were in the south, within a Mediterranean climate (Sorraia and Estação Experimental António Teixeira), and three were in the north, within an Atlantic climate (São João de Loure, Pateira de Fermentelos, and Vila Valente), representing both agricultural-runoff–impacted areas and recreational zones. Extracts were used to simulate a worst-case scenario. All extracts have shown high conductivity (≥15.4 mS/cm), and several elements have shown a high soluble fraction (e.g., K, P, As, or Ba), indicating substantial leaching from the biomass to the extracts. Despite this, T. versicolor growth rates were generally not inhibited, except for exposure to the São João de Loure extract, where an EC50 of 45.3% (extract dilution) was determined and a significant sugar content decrease was observed at extract concentrations ≥25%. Possibly due to the high phosphorous leachability, both acid and alkaline phosphatase activities increased significantly at the highest percentages tested (50% and 100%). Furthermore, ROS levels increased with increasing extract concentrations, yet marginal changes were observed in growth rates, suggesting that T. versicolor may efficiently regulate its intracellular redox balance under stress conditions. Overall, these findings indicate that the degradation of P. crassipes biomass in soils, while altering chemical properties and releasing soluble elements, may not impair and could even boost microbiota, namely saprophytic fungi. This resilience highlights the potential ecological benefit of saprophytic fungi in accelerating the decomposition of invasive plant residues and contribution to soil nutrient cycling and ecosystem recovery. Full article
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16 pages, 2485 KB  
Article
Culture System and Nutrient Restriction Shape Antioxidant Activity in In Vitro Spearmint (Mentha spicata L.) Shoots
by Raquel Martínez-Carrillo, Fátima Z. Behloul, María Á. Ferrer and Antonio A. Calderón
Plants 2025, 14(24), 3863; https://doi.org/10.3390/plants14243863 - 18 Dec 2025
Viewed by 324
Abstract
Spearmint phytochemicals exhibit remarkable antidiabetic, antioxidant, and broad pharmacological activities. In vitro organ cultures offer an efficient and sustainable platform for enhancing the production of these bioactive metabolites, although optimized media and cultivation strategies are essential to maximize yields. Here, four Murashige and [...] Read more.
Spearmint phytochemicals exhibit remarkable antidiabetic, antioxidant, and broad pharmacological activities. In vitro organ cultures offer an efficient and sustainable platform for enhancing the production of these bioactive metabolites, although optimized media and cultivation strategies are essential to maximize yields. Here, four Murashige and Skoog (MS) medium variants and three cultivation systems—agar-solidified, static-liquid (L), and agitated-liquid (LA)—were evaluated to assess phenolics, antioxidant capacity, antidiabetic potential, and metabolic biochemical markers in in vitro-grown spearmint shoots. Half-strength MS (MS/2) consistently produced the highest antioxidant activity and accumulation of phenolics and sugars across all systems. The MS/2–L combination markedly boosted antioxidant responses, increasing 2,2-diphenyl-1-picrylhydrazyl (DPPH) values up to 27-fold and ferric reducing antioxidant power (FRAP) values tenfold relative to full-strength MS. Antioxidant capacity strongly correlated with total phenolics, flavonoids, rosmarinic acid, antidiabetic activity, and carbohydrate levels. Lipid peroxidation analysis further revealed that shoots cultured under LA conditions showed the highest level of malondialdehyde (MDA) accumulation, whereas MSN/2 (half-strength nitrogen) consistently yielded the lowest MDA levels across all cultivation systems. Collectively, these results highlight the strong influence of nutrient availability and culture system on the metabolic performance of in vitro-grown spearmint. In conclusion, nutrient limitation combined with liquid cultivation effectively enhances antioxidant metabolite accumulation, providing valuable criteria for the future design and optimization of scalable bioreactor systems. Full article
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13 pages, 1089 KB  
Article
Metabolic Differences Between Fruits from Grafted and Non-Grafted P. mahaleb L.
by Chiara Roberta Girelli, Federica Blando, Susanna Bartolini and Francesco Paolo Fanizzi
Agriculture 2025, 15(24), 2539; https://doi.org/10.3390/agriculture15242539 - 7 Dec 2025
Viewed by 330
Abstract
In the cherry-growing area of Apulia (Italy), sweet cherry (Prunus avium L.) cultivars are commonly grafted onto Prunus mahaleb L. rootstock. This study investigated the influence of the scion on the fruit quality of the rootstock, an aspect that remains largely underexplored [...] Read more.
In the cherry-growing area of Apulia (Italy), sweet cherry (Prunus avium L.) cultivars are commonly grafted onto Prunus mahaleb L. rootstock. This study investigated the influence of the scion on the fruit quality of the rootstock, an aspect that remains largely underexplored in studies of stionic interactions. In an old sweet cherry orchard in the Bari area, several ‘Ferrovia’ trees grafted onto P. mahaleb L. rootstock were observed, where some rootstock individuals had developed fruiting branches below the grafting point. We collected fruits from those mahaleb rootstocks and compared them with fruits produced by non-grafted P. mahaleb L. trees growing in the same orchard. Extracts of grafted and non-grafted mahaleb cherries was analyzed by HPLC-DAD and 1H-NMR. Anthocyanins, coumaric acid derivatives, organic acids, and reducing sugars were identified in both extracts. Non-grafted mahaleb fruits were characterized by a higher relative content of malic acid, fructose, dihydro-coumaric acid derivatives, and anthocyanins and lower content of α/β glucose and sorbitol, with respect to the grafted mahaleb. The metabolic differences observed between fruits from grafted and non-grafted P. mahaleb L. were further supported by our preliminary NMR-based analysis conducted on fruit juice over two consecutive years. The results suggest that grafting may induce some physiological changes not only in the scion, but also in the rootstock, even in its vegetative (above-ground) organs, if developed. This work represents a novel finding and reinforces the broader understanding that grafting impacts physiological processes in plants. Full article
(This article belongs to the Section Crop Production)
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21 pages, 2569 KB  
Article
Synergistic Effects of Selenium and Silicon Nanoparticles on Peach Quality Enhancement and Se Biofortification Through Foliar Application
by Ziyang Wang, Bilal Hussain, Xin Wang, Yasir Hamid, Jiali Zhang, Muhammad Bilal Khan, Zhenli He and Xiaoe Yang
Plants 2025, 14(23), 3669; https://doi.org/10.3390/plants14233669 - 2 Dec 2025
Viewed by 504
Abstract
Selenium (Se) biofortification represents a critical strategy for addressing micronutrient deficiency while enhancing fruit nutritional quality. This study investigated foliar applications of Se and Si nanoparticles (NPs) for peach Se biofortification and quality enhancement. Se NPs (95.2 nm) were synthesized and characterized using [...] Read more.
Selenium (Se) biofortification represents a critical strategy for addressing micronutrient deficiency while enhancing fruit nutritional quality. This study investigated foliar applications of Se and Si nanoparticles (NPs) for peach Se biofortification and quality enhancement. Se NPs (95.2 nm) were synthesized and characterized using SEM, EDS, and FTIR analyses. Six treatments were applied: control (Ck), SeNPs-5, SeNPs-10, SiNPs-10, Se5Si10, and Se10Si10. SeNPs-10 achieved maximum Se biofortification (0.47 mg kg−1), representing 5.4-fold increases over controls, with 85% organic Se accumulation. Combined treatments demonstrated synergistic effects on multiple quality parameters. Se5Si10 led to the highest antioxidant enzyme activities (peroxidase: 2254 U g−1, catalase: 61.7 U g−1) and phenolic compound enhancement (chlorogenic acid: 267 mg kg−1, total phenolics: 12.8 mg GAE g−1). Flavonoid biosynthesis was optimized with Se10Si10 achieving maximum rutin accumulation (53.9 mg kg−1) and ascorbic acid content (60.7 mg/100 g). Physical quality improvements included enhanced firmness (100.9 N cm−2) and sugar accumulation (14.1% soluble solids). Combined treatments reduced oxidative stress markers (MDA: 22.11 μmol g−1) while enhancing protein metabolism. These findings demonstrate that Se-Si nanoparticle combinations showed optimal biofortification with synergistic quality enhancement, establishing effective strategies for nutritionally enriched peach production. Full article
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20 pages, 589 KB  
Review
Molecular Mechanisms of Root Exudate-Mediated Remediation in Soils Co-Contaminated with Heavy Metals and Polycyclic Aromatic Hydrocarbons
by Lingyun Sun, Jinling Mo, Zhenjiang Wang, Sen Lin, Dan Wang, Zhiyi Li, Yuan Wang, Jianan Wu, Wuyan Guo, Jiehua Chen, Zhipeng Wu and Lian Chen
Toxics 2025, 13(12), 1044; https://doi.org/10.3390/toxics13121044 - 2 Dec 2025
Cited by 1 | Viewed by 873
Abstract
Soil co-contamination with heavy metals (HMs) and polycyclic aromatic hydrocarbons (PAHs) represents a widespread and challenging environmental issue that is difficult to address using conventional remediation methods. This review systematically examines the molecular mechanisms by which plant root exudates mediate the remediation of [...] Read more.
Soil co-contamination with heavy metals (HMs) and polycyclic aromatic hydrocarbons (PAHs) represents a widespread and challenging environmental issue that is difficult to address using conventional remediation methods. This review systematically examines the molecular mechanisms by which plant root exudates mediate the remediation of co-contaminated soils through synergistic interactions with rhizosphere microorganisms. We detail how plants dynamically adjust the composition and secretion of root exudates—such as organic acids, amino acids, sugars, and secondary metabolites—in response to combined HM-PAH stress. These exudates play multifaceted roles in remediation, including chelating HMs, enhancing PAH solubility and bioavailability, and acting as chemoattractants and metabolic substrates for rhizosphere microbes. In return, the recruited microbial communities contribute to pollutant detoxification through various mechanisms, such as biosurfactant production, enzymatic degradation, and improved plant nutrient acquisition. This reciprocal interaction forms a synergistic plant-microbe feedback loop that effectively mitigates combined contamination stress. By integrating evidence from diverse plant–soil systems, this review provides a comprehensive mechanistic framework for understanding root exudate-microbe interactions, offering critical insights for developing enhanced phytoremediation strategies to address complex environmental pollution. Full article
(This article belongs to the Special Issue Fate and Transport of Emerging Contaminants in Soil)
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24 pages, 5834 KB  
Article
Multi-Omics Elucidation of Flavor Characteristics in Compound Fermented Beverages Based on Flavoromics and Metabolomics
by Xiaolong Li, Jun Ma, Yannan Chu, Hui Li, Yin Zhang, Abo Li and Yonghua Jia
Foods 2025, 14(23), 4119; https://doi.org/10.3390/foods14234119 - 1 Dec 2025
Viewed by 689
Abstract
To characterize the key odorants and elucidate the flavor profiles of compound fermented beverages after fermentation, single-compound fermented beverages (GW, AW) and a compound fermented beverage (CW) were prepared using Italian Riesling grapes and SirPrize apples as raw materials. The flavor and metabolite [...] Read more.
To characterize the key odorants and elucidate the flavor profiles of compound fermented beverages after fermentation, single-compound fermented beverages (GW, AW) and a compound fermented beverage (CW) were prepared using Italian Riesling grapes and SirPrize apples as raw materials. The flavor and metabolite profiles were systematically analyzed by integrating flavoromics (comprehensive two-dimensional gas chromatography–time-of-flight mass spectrometry, GC × GC–TOF MS) and metabolomics (LC–MS/MS). The results demonstrated that CW exhibited the most favorable acid/reducing sugars (2.18), imparting a drier taste and superior stability. Compounds with relative odor activity values (rOAV) greater than 1—including 3-methyl-1-butyl acetate, ethyl hexanoate, ethyl butanoate, and ethyl octanoate—collectively contributed prominent fruity, floral, and sweet aromas to all three wine types. Ethyl decanoate provided an additional distinctive traditional fruity note specifically to AW, while 1-octen-3-ol contributed a mushroom-like aroma to both GW and CW. Moreover, 3-methylbutanal, 4-ethyl-2-methoxyphenol, and ethyl 3-methylbutanoate added additional significant aroma contributions to CW, imparting floral, clove-like, and fruity notes, respectively. Notably, ethyl hexanoate (fruity aroma) exhibited a remarkably high rOAV of 27.43 in CW, significantly surpassing its levels in the single-substrate fermentations. Lipid metabolism and the phenylpropanoid pathway were significantly activated in CW, facilitating the coordinated synthesis of esters and phenolic compounds. Sensory attribute network analysis further confirmed that CW possessed more pronounced “sweet”, “fruity”, and “floral” characteristics. Correlation analysis revealed significant relationships between volatile organic compounds (VOCs) and total soluble solids (TS), titratable acidity (TA), the TA/TS ratio, and metabolite levels, underscoring the close connections among physicochemical properties, precursor/intermediate metabolites, and flavor formation. Comprehensive analysis of non-volatile metabolites and flavor-associated VOCs revealed variety-specific characteristics and compounding effects, providing valuable insights for enhancing the quality of compound fermented beverages. Full article
(This article belongs to the Section Drinks and Liquid Nutrition)
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19 pages, 8279 KB  
Article
Integrated Transcriptomic and Biochemical Analyses Reveal the Root Development-Promoting Mechanism of Piriformospora indica on Blueberry Under Tap Water Irrigation
by Sijian Guo, Pengyan Qu, Shitao Du, Rui Liu, Yongyan Zhang and Chunzhen Cheng
Plants 2025, 14(23), 3646; https://doi.org/10.3390/plants14233646 - 29 Nov 2025
Viewed by 516
Abstract
Piriformospora indica, a broad-spectrum plant growth-promoting fungus, has been successfully applied in blueberry (Vaccinium corymbosum L.). In this study, through an integrated transcriptomic and biochemical analyses, we investigated the effects of P. indica colonization on blueberry root growth under long-term tap [...] Read more.
Piriformospora indica, a broad-spectrum plant growth-promoting fungus, has been successfully applied in blueberry (Vaccinium corymbosum L.). In this study, through an integrated transcriptomic and biochemical analyses, we investigated the effects of P. indica colonization on blueberry root growth under long-term tap water (EC ≈ 1500 μs/cm) irrigation. Comparative transcriptomic analysis revealed that P. indica colonization greatly influenced the expression of genes involved in RNA biosynthesis, solute transport, response to external stimuli, phytohormone action, carbohydrate metabolism, cell wall organization, and secondary metabolism pathways. Consistently, the fungal colonization significantly improved the nutrient absorption ability, and increased the contents of sucrose, starch, trehalose, total phenolic, total flavonoids, and indole-3-acetic acid (IAA), while suppressing the accumulations of jasmonic acid (JA), abscisic acid (ABA), 1-aminocyclopropane-1-carboxylic acid (ACC), and strigolactone (SL) in blueberry roots. Quantitative real-time PCR verification also confirmed the fungal influences on genes associated with these pathways/parameters, such as auxin homoeostasis-associated WAT1, cell wall metabolism-related EXP, phenylpropanoid biosynthesis-related PAL and CHS, carotenoid degradation-related CCD8, transportation-related CNGC, trehalose metabolism-related TPP, and so on. Our study demonstrated that P. indica improved blueberry adaptability to mild salt stress by synergistically regulating cell wall metabolism, secondary metabolism, stress responses, hormone homeostasis, sugar and mineral element transportation, and so on. Full article
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14 pages, 2467 KB  
Article
Comprehensive Profiling of Free Amino Acids in Litchi (Litchi chinensis Sonn.) Germplasm and Their Implications for Flavor Quality
by Yingjie Wen, Fachao Shi, Yonghua Jiang, Hailun Liu and Qian Yan
Foods 2025, 14(23), 4051; https://doi.org/10.3390/foods14234051 - 26 Nov 2025
Viewed by 447
Abstract
Litchi chinensis Sonn. is an economically and culturally significant fruit crop in China, valued for its distinctive flavor, which arises from the combined contributions of taste and aroma metabolites. While the accumulation of sugars, organic acids, and volatile terpenes in litchi has been [...] Read more.
Litchi chinensis Sonn. is an economically and culturally significant fruit crop in China, valued for its distinctive flavor, which arises from the combined contributions of taste and aroma metabolites. While the accumulation of sugars, organic acids, and volatile terpenes in litchi has been extensively studied, the role of nitrogenous flavor compounds, particularly free amino acids (FAAs), remains poorly characterized across diverse germplasm. To address this gap, high-performance liquid chromatography (HPLC) was employed to quantify 20 free amino acids in the pulp of 148 distinct litchi germplasm accessions. Comprehensive statistical analyses, including non-parametric tests, correlation analysis, and hierarchical clustering, were performed to elucidate compositional variations. Alanine (Ala), glutamate (Glu), and γ-aminobutyric acid (GABA) were the most abundant FAAs, contributing strongly to sweetness and umami. FAA profiles differed significantly among genomic groups, and clustering analysis identified three major chemotypes: Glu-accumulating, GABA-accumulating, and Ala-accumulating types. This study provides the first large-scale survey of FAA diversity in litchi germplasm and establishes a foundation for selecting cultivars with desirable flavor attributes and for future genomic dissection of amino acid metabolism. Full article
(This article belongs to the Section Food Quality and Safety)
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16 pages, 3825 KB  
Article
Integrative Multi-Omics Reveals Quality Markers and Metabolic Pathways Across Genotype and Ripening Gradients in High-Altitude Malus
by Huiqin Shi, Ting Guo, Chenlong Wei, Jie Tian, Xiaoqing Hou and Yi Li
Foods 2025, 14(23), 4039; https://doi.org/10.3390/foods14234039 - 25 Nov 2025
Viewed by 378
Abstract
Apples from high-altitude orchards exhibit a distinctive sugar–acid balance, yet the varietal and maturity drivers remain unclear. A multi-omics survey was conducted to map sugars and acids and to resolve pathway control. Chromatography–mass spectrometry, RNA-seq, and principal component (PC) dimensionality reduction fitting analysis [...] Read more.
Apples from high-altitude orchards exhibit a distinctive sugar–acid balance, yet the varietal and maturity drivers remain unclear. A multi-omics survey was conducted to map sugars and acids and to resolve pathway control. Chromatography–mass spectrometry, RNA-seq, and principal component (PC) dimensionality reduction fitting analysis were integrated across Malus prunifolia and M. asiatica at 60 and 120 days after flowering (DAF). PC separated maturity on PC1 and species on PC2, and canonical correlation confirmed gene–metabolite couplings. Malate predominated but declined with ripening as sucrose rose; M. prunifolia at 60 DAF showed higher maltose/inositol, whereas M. asiatica at 120 DAF accumulated pentoses/xylitol. In M. prunifolia 60 vs. 120 DAF (Q60–Q120), enrichment targeted starch/sucrose plus pentose–glucuronate remodeling; in M. asiatica 60 vs. 120 DAF (S60–S120), fructose/mannose routes dominated with persistent wall-sugar signatures. Correlations linked succinate and pyruvate positively, and malate negatively, to hexoses, outlining an ALMT9/MDH-bridged acid–sugar switch. These maturation-anchored markers inform quality breeding and postharvest strategies. Full article
(This article belongs to the Section Plant Foods)
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15 pages, 1458 KB  
Article
Comparative Evaluation of Organic and Synthetic Fertilizers on Lettuce Yield and Metabolomic Profiles
by Ana García-Rández, Luciano Orden, Silvia Sánchez-Méndez, Francisco Javier Andreu-Rodríguez, José Antonio Sáez-Tovar, Encarnación Martínez-Sabater, María de los Ángeles Bustamante, María Dolores Pérez-Murcia and Raúl Moral
Horticulturae 2025, 11(12), 1421; https://doi.org/10.3390/horticulturae11121421 - 24 Nov 2025
Viewed by 655
Abstract
The excessive use of synthetic fertilizers in agriculture has raised environmental concerns, prompting the search for sustainable alternatives, such as organic amendments. This study evaluated the agronomic performance, nutrient use efficiency and metabolomic profiles of lettuce (Lactuca sativa L. var. baby leaf) [...] Read more.
The excessive use of synthetic fertilizers in agriculture has raised environmental concerns, prompting the search for sustainable alternatives, such as organic amendments. This study evaluated the agronomic performance, nutrient use efficiency and metabolomic profiles of lettuce (Lactuca sativa L. var. baby leaf) cultivated using synthetic and organic (olive mill waste-based compost pellets and sewage sludge) in a controlled pot experiment. The treatments included three doses of inorganic fertilizer and two organic fertilizers applied at equivalent nitrogen (N) rates, alongside an unfertilized control. Soil physicochemical properties, plant biomass, nutrient uptake and metabolite profiles, including amino acids, sugars and organic acids, were analyzed. Inorganic fertilization rapidly increased soil mineral N and phosphorus (P), enhancing leaf chlorophyll, canopy development and fresh biomass, and promoting the accumulation of reducing sugars (p < 0.05). However, it reduced amino acid and phenolic levels, indicating a metabolic shift towards growth at the expense of stress and antioxidant compounds. Sewage sludge increased soil organic matter and amino acid and sucrose accumulation, but also induced stress-related metabolites. Pelletized compost maintained an intermediate level of nutrient availability, preserved phenolic compounds and improved phosphorus use efficiency. This surpassed the results achieved with sewage sludge in terms of dry matter yield, despite limited short-term growth stimulation. These findings highlight the potential of integrating moderate mineral fertilization with pelletized compost to balance immediate productivity, nutrient efficiency and long-term soil and metabolic quality in lettuce cultivation. Full article
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18 pages, 2695 KB  
Article
Comparative Analysis of Growth Traits and Metabolic Profiles in Camassia Cultivars ‘Alba’ and ‘Caerulea’ Under Varying Cultivation Conditions
by Alina-Ştefana Ozarchevici, Ilian Badjakov, Petko Mladenov, Ivayla Dincheva, Bogdan-Ionel Cioroiu and Lucia Draghia
Molecules 2025, 30(23), 4520; https://doi.org/10.3390/molecules30234520 - 23 Nov 2025
Viewed by 628
Abstract
This study examines the morphological growth and metabolic responses of two Camassia leichtlinii cultivars, ‘Alba’ and ‘Caerulea’, cultivated under three contrasting systems: open field, outdoor pots, and greenhouse (indoor pots). Morphological parameters, including leaf number, scape development, and bulb biometric traits, were assessed [...] Read more.
This study examines the morphological growth and metabolic responses of two Camassia leichtlinii cultivars, ‘Alba’ and ‘Caerulea’, cultivated under three contrasting systems: open field, outdoor pots, and greenhouse (indoor pots). Morphological parameters, including leaf number, scape development, and bulb biometric traits, were assessed over two consecutive growth seasons. Parallel GC–MS metabolite profiling identified 38 major compounds encompassing sugars, fatty acids, amino acids, and organic acids. Principal component analysis (PCA) and hierarchical clustering (HCA) effectively discriminated samples by cultivation condition, cultivar, and plant maturity. Environmental factors accounted for the largest share of metabolic variation (61%), followed by genotype (28%) and plant age (6%). The cultivar ‘Caerulea’ exhibited greater biomass accumulation and broader metabolic variability under greenhouse conditions, while ‘Alba’ maintained consistently high sucrose and glutamine levels across environments. Notably, the greenhouse environment, although strongly promoting primary metabolite accumulation, suppressed scape initiation and flowering in both cultivars, indicating a trade-off between metabolic enhancement and reproductive development under controlled conditions. These findings highlight differential adaptive strategies among Camassia cultivars and provide molecular insights into their carbohydrate metabolism, environmental responsiveness, and potential nutritional and phytochemical applications under diverse horticultural conditions. Full article
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20 pages, 6642 KB  
Article
Agave Fructans as a Carbon Source to Develop a Postbiotic-Based Strategy for the Prophylaxis and Treatment of Helicobacter pylori Infection
by Enrique A. Sanhueza-Carrera, Natalia C. Hernández-Delgado, Carolina Romo-González, César Castro-De la Mora, Claudia Mendoza-Camacho, Cynthia Fernández-Lainez and Gabriel López-Velázquez
Int. J. Mol. Sci. 2025, 26(22), 11119; https://doi.org/10.3390/ijms262211119 - 17 Nov 2025
Viewed by 666
Abstract
Helicobacter pylori is a Gram-negative bacterium that inhabits the gastric mucosa and infects over 50% of the global population, predominantly in developing countries. The organism causes chronic gastritis and is associated with gastric carcinoma. Traditional antibiotic treatment promotes intestinal dysbiosis and antimicrobial resistance. [...] Read more.
Helicobacter pylori is a Gram-negative bacterium that inhabits the gastric mucosa and infects over 50% of the global population, predominantly in developing countries. The organism causes chronic gastritis and is associated with gastric carcinoma. Traditional antibiotic treatment promotes intestinal dysbiosis and antimicrobial resistance. In this context, postbiotics—the metabolic end products of probiotics—have been shown to be powerful antimicrobial alternatives. The excretion/secretion (E/S) products and exopolysaccharides (EPSs) of lactic acid bacteria (LAB) have been found to exhibit inhibitory activity against pathogens. EPSs are complex sugar polymers involved in biofilm formation and stress resistance, and their activity varies with culture conditions. Most notably, no digestible carbohydrates, such as those present in agave-derived Graminan-Type fructans (GTFs), are effective carbon sources for LAB, which, in turn, affects their metabolic end products. In this study, the E/S products and EPSs of the INP_MX_001 LAB strain were assayed for antimicrobial and antibiofilm activity after growth with three structurally different GTFs. Results indicated potent inhibition of H. pylori survival and biofilm formation in vitro. Our results confirm the promise of using LAB-derived postbiotics, particularly those produced with GTFs, as a novel, non-antibiotic means of combating H. pylori colonization and infection. Full article
(This article belongs to the Special Issue Pathogenic Microorganisms, Viruses and Therapeutic Strategies)
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17 pages, 2290 KB  
Article
Comparative Analysis of Amino Acid, Sugar, Acid and Volatile Compounds in 4-CPA-Treated and Oscillator-Pollinated Cherry Tomato Fruits During Ripe Stage
by Zhimiao Li, Sihui Guan, Meiying Ruan, Zhuping Yao, Chenxu Liu, Hongjian Wan, Qingjing Ye, Yuan Cheng and Rongqing Wang
Foods 2025, 14(22), 3914; https://doi.org/10.3390/foods14223914 - 15 Nov 2025
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Abstract
4-Chlorophenoxyacetic acid (4-CPA) is an auxin-type plant growth regulator widely used in fruit and vegetable production. However, its influence on the nutritional and sensory qualities of horticultural crops remains insufficiently characterized. This study investigated the influence of 4-CPA application and oscillator-mediated pollination on [...] Read more.
4-Chlorophenoxyacetic acid (4-CPA) is an auxin-type plant growth regulator widely used in fruit and vegetable production. However, its influence on the nutritional and sensory qualities of horticultural crops remains insufficiently characterized. This study investigated the influence of 4-CPA application and oscillator-mediated pollination on the metabolic composition of fully ripe fruits of Solanum lycopersicum var. cerasiforme cv. ‘Zheyingfen No. 1’. Two concentrations of 4-CPA (16 mg/L and 8 mg/L) were applied during flowering, and their effects on amino acids, soluble sugars, organic acids, and volatile compounds (VOCs) were comparatively analyzed. The results indicated that treatment with 8 mg/L 4-CPA treatment significantly increased the total amino acid content in ripe fruits compared with the control and the 16 mg/L treatment. Among the 17 amino acids identified, the contents of umami-related amino acids, including glutamic acid (Glu) and aspartic acid (Asp), were markedly enhanced. In particular, Glu content in the C8 treatment was the highest and accounted for more than 50% of the total amino acid content. The accumulation of sugars was not significantly affected by 4-CPA treatment, while the C8 treatment resulted in the lowest level of total organic acids, which are crucial for flavor development at the ripening stage. A 29.35% increase in VOCs was observed” for conciseness in 4-CPA-treated fruits compared with the control. Analysis of relative odor activity values (rOAVs) showed that although 4-CPA treatment reduced the number of aroma-active compounds, it promoted the accumulation of β-ionone, thereby shifting the tomato fruit aroma profile toward floral, woody, sweet, and fruity notes. In summary, 4-CPA treatment regulated the nutritional and flavor quality of ripe cherry tomato fruits by increasing the content of Glu and other amino acids, enhancing the diversity of VOCs, and promoting the formation of key aroma-active substances such as β-ionone. Full article
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