Search Results (121)

Thraustochytrids are promising alternatives for the production of docosahexaenoic acid (DHA; C22:6 n-3), a long-chain polyunsaturated fatty acid with health benefits. For practical application of this oleaginous microorganism, an efficient cultivation method to enhance DHA production is required, which relies on several factors that support cell growth, lipid accumulation, and lipid turnover. In this study, the robust submerged fermentation of an acid- and high-temperature-tolerant strain of Aurantiochytrium limacinum was investigated. Under controlled temperature and acidic conditions (pH 4.5 and 30 °C), glucose and peptone were the best carbon and nitrogen sources for enhancing biomass and DHA production, respectively, with a glucose concentration of 60 g/L and a C/N ratio of 24 being optimal for DHA production. Applying an aeration rate of 2 vvm and an agitation speed of 300 rpm using a combination of a ring sparger and pitch-blade impeller in a stirred-tank bioreactor improved DHA production using intermittent fed-batch fermentation. The highest DHA titer was obtained at 3.01 g/L, and the DHA content in biomass was 10.69% (w/w) after intermittent feeding of cassava starch hydrolysate as the substrate. Full article

The present study investigates the potential of olive mill wastewater (OMW), supplemented with expired commercial glucose syrup, as a sustainable substrate for the submerged cultivation of Tuber spp. wild mushrooms. OMW contains considerable quantities of phenolic compounds, making it both a challenging pollutant and a promising nutrient source. To assess fungal performance under increasing phenolic stress, culture media were prepared with varying OMW concentrations (0–75% v/v on agar; 0–50% v/v in liquid media), while glucose was adjusted to ~30 g/L using expired glucose syrup. A sequential experimental approach was followed, beginning with Petri dish screenings on substrate/strain selection (measuring the mycelial growth rate; Kr, mm/day), progressing to 25-day shake flask fermentations and subsequently scaling up the most promising strain (Tuber mesentericum) in a controlled stirred-tank bioreactor. Throughout cultivation, substrate consumption (glucose, phenolics), pH evolution and decolorization were evaluated, while the resulting biomass was analyzed for polysaccharides, β-glucans, proteins, lipids, fatty acids, antioxidants, phenolic acids and triterpenoids content. Results showed that increasing OMW concentration enhanced tolerance and metabolic activity in selected Tuber species, with T. mesentericum exhibiting the highest resilience and achieving comparable or higher biomass yields in OMW-based media than in glucose (control). Phenolic removal exceeded 60% in flasks and 50% in the bioreactor, confirming simultaneous bioremediation capacity. Bioreactor cultivation demonstrated efficient substrate utilization and biomass production, while OMW-grown biomass presented high lipid content, enriched with unsaturated fatty acids, high β-glucan levels and increased antioxidant and phenolic profiles. Overall, this study demonstrates that OMW (supplemented with expired glucose syrup) can serve as a cost-effective and environmentally beneficial substrate for Tuber biomass production with dietary and antioxidant properties, offering an alternative source to mushroom carposomes, as well as supporting the circular bioeconomy strategies within olive oil processing industries. Full article

Plants living in wetland environments (hydrophytes) have developed metabolic adaptations to cope with hypoxia. However, the specific metabolic signatures underlying this adaptation in naturally occurring hydrophytes, compared to their mesophytic relatives, remain insufficiently explored. GC-MS was used to carry out a comparative metabolic profiling of leaves from two pairs of closely related species (the hydrophytes Iris pseudacorus and Comarum palustre versus the mesophytes I. sibirica and Argentina anserina). In total, approximately 260 compounds were detected, of which roughly 100 were annotated. Using Principal Component Analysis, we revealed that the primary source of metabolic variation was phylogenetic (genus/tribe affiliation), while a secondary gradient correlated with ecological adaptation to submergence. A common adaptive metabolic signature of hydrophytes was identified, including the accumulation of dicarboxylic acids from Krebs cycle (succinate, fumarate) and glycolytic metabolites (pyruvate), suggesting a restructuring of energy metabolism under oxygen deficiency. Furthermore, hydrophytes, particularly I. pseudacorus, accumulated higher levels of soluble sugars (sucrose, fructose, glucose) and amino acids, thereby supporting energy supply and alternative NAD(P)H reoxidation pathways. Species-specific differences in the accumulation of antioxidants (e.g., flavonoids, ascorbate) were also observed, indicating diverse strategies for managing oxidative stress. Our findings contribute to identifying a “metabolic fingerprint” associated with waterlogging tolerance. Full article

Autophagy is an evolutionarily conserved cellular process that maintains homeostasis by degrading intracellular materials. Numerous studies have investigated the role of autophagy-related genes (ATGs) in plant adaptation to abiotic stresses. In plants, hypoxia (e.g., flooding events, oxygen supply during growth) rapidly activates the autophagy pathway as a protective mechanism for cell survival. Considering the moisture-loving yet waterlogging-sensitive nature of tea plants, this study explored the role of CsATG8f in the tea plant’s response to submergence. We found that overexpression of CsATG8f formed more autophagosomes than controls under submergence. Furthermore, CsATG8f was confirmed to physically interact with CsRAP2.12. Co-overexpression of both genes partially suppressed transcription of hypoxia-response genes while activating the antioxidant system, thereby enhancing tea plants’ resistance to submergence. Consistent with this, the opposite trend was observed in silenced plants, which attempted to mitigate stress damage by increasing GABA levels in vivo. In conclusion, our study reveals the crucial roles of CsATG8f and CsRAP2.12 in tea plant tolerance to submergence and provides new insights into potential regulatory networks governing tea plant adaptation to flooding. Full article

This study aims to compare the transcriptional responses of japonica and indica rice genotypes with contrasting submergence tolerance and to functionally validate the role of OsEXPB3. Flooding is a major abiotic stress limiting stable rice production, and different genotypes show substantial variation in submergence tolerance. However, the transcriptional and molecular regulatory mechanisms underlying subspecies-specific responses remain poorly understood. Here, RNA-seq analysis of japonica and indica accessions with contrasting tolerance levels was performed to construct molecular response networks and identify key tolerance-related genes. Comparative analysis revealed that both subspecies activate biological processes such as stimulus response, redox homeostasis, carbon metabolism, and hormone signaling under submergence. In the analyzed japonica genotypes, plants relied more on integrated hormone-regulated signaling, whereas in the analyzed indica genotypes, metabolic homeostasis was more prominent. Among the identified genes, OsEXPB3, a β-expansin gene, was consistently upregulated in tolerant accessions, whereas osexpb3 mutants displayed suppressed coleoptile and seedling elongation and reduced tolerance. Hormone profiling revealed a 0.1–0.3-fold increase in ethylene (ETH) and a 50–70% reduction in gibberellin (GA) in mutants after submergence. Defense-related hormones, including jasmonic acid (JA) and salicylic acid (SA), were initially higher but declined markedly under stress conditions. Given that the OsEXPB3 promoter contains multiple ETH-, GA-, ABA-, JA- and SA-responsive cis-elements, we propose that OsEXPB3 may coordinate the balance between growth- and defense-related hormones to mediate adaptive responses to flooding. This study reveals conserved and divergent molecular responses between subspecies and suggests that OsEXPB3 may contribute to submergence tolerance in rice, although its regulatory role requires further validation. Full article

The present study systematically explored the purification effects and response of submerged plants, Ceratophyllum demersum and Myriophyllum spicatum, on toxic and non-toxic strains of Microcystis aeruginosa via indoor co-culture experiments. The results showed that: (1) Both plants significantly inhibited the growth of Microcystis and reduced the concentration of chlorophyll-a (Chla) in the water by rapidly absorbing nutrients such as nitrogen and phosphorus, with no significant differences in the inhibition between toxic and non-toxic strains, indicating that nutrient competition might be the dominant mechanism for algal suppression. (2) C. demersum had higher nitrogen and phosphorus removal efficiency than M. spicatum, but the microcystins (MCs) released by toxic M. aeruginosa inhibited the nutrient removal capacity of both plants. (3) The plants promoted cell lysis of toxic M. aeruginosa and reduced extracellular MCs in the water while accumulating MCs internally, with C. demersum showing stronger MC accumulation and removal ability. (4) Microcystis stress activated the plants’ antioxidant defense systems, increased activities of SOD (Superoxide Dismutase) and CAT (Catalase), and caused membrane lipid peroxidation, increased content of MDA (Malondialdehyde), with toxic M. aeruginosa inducing stronger oxidative stress, and M. spicatum being more severely affected. (5) Plant species and algal toxicity jointly drove changes in the attached microbial community structure. The rhizosphere of M. spicatum specifically enriched Bdellovibrionota, suggesting a potential microbial predation pathway for algal suppression, while C. demersum was more associated with Bacillus and other microbes with allelopathic potential. In summary, C. demersum performed better in nutrient removal, toxin accumulation, and physiological tolerance. This study provides further theoretical support for using submerged plants to regulate cyanobacterial blooms and remediate eutrophic water bodies. Full article

Submergence stress is a major constraint in direct-seeded rice production. This study investigated the effect and biochemical mechanism of sprouting, a traditional agronomic practice, on improving submergence tolerance in rice. Our findings demonstrate that sprouting is an effective seed treatment that significantly enhances the plant’s ability to withstand flooding. Specifically, 48 h sprouting increased shoot height and root length by 163% and 423%, respectively, in the YLYJ48 variety under 6-day submergence. Sprouting upregulated the activity of glutathione reductase (GR) and the expression of its related genes, thereby significantly promoting the biosynthesis of glutathione (GSH). GSH content in seeds increased from 64.86 µg g⁻¹ FW (0 h) to 83.00 µg g⁻¹ FW (48 h) in HZ, and from 82.14 to 92.52 µg g⁻¹ FW in YLYJ48. This process provides critical antioxidant protection for seedlings to implement a rapid “escape strategy,” ultimately enhancing their submergence tolerance. Functional verification showed that seed soaking with exogenous GSH (0.1%) effectively improved submergence tolerance by increasing antioxidant reserves. Exogenous GSH treatment elevated shoot height by approximately 50% in both HZ and YLYJ48 varieties under submergence. Field trials further demonstrated that exogenous GSH application significantly enhanced seedling establishment rates by 30–35% and improved seedling growth traits under submergence tolerance stress across multiple rice varieties. This study reveals part of the mechanism by which sprouting enhances submergence tolerance by influencing glutathione metabolism, offering practical strategies for flood-resilient direct-seeded rice cultivation. Full article

Submergence during germination (SG) is a major constraint during sowing, severely limiting the promotion and application of direct-seeded rice. Recent studies have revealed the adaptive mechanisms by which rice responds to SG. At the physiological level, flood-tolerant varieties effectively maintain energy supply and cellular homeostasis by enhancing amylase activity, improving glycolysis and ethanolic fermentation efficiency, promoting embryo sheath elongation, and activating antioxidant enzyme systems; at the molecular level, multiple key genes and signalling pathways have been identified, including SUB1A, OsTPP7, OsGF14h, etc., participating in hypoxia perception, metabolic reprogramming, and hormone signal integration to regulate SG under flooding. In addition, the interactions among plant hormones, such as ethylene, gibberellin, abscisic acid, and cytokinin, also play key roles in the SG process. Future research should prioritize breeding strategies that pyramid multiple genes by integrating gene editing, whole-genome selection, and high-throughput phenotyping to improve seed germination under flood stress. Full article

Submergence during germination is a major barrier to the adoption of direct-seeded rice (DSR). Despite its importance in overcoming this barrier, the genetic architecture underlying the rapid coleoptile elongation under submergence remains largely elusive. Through screening among 20 different rice cultivars, a submergence-tolerant cultivar Xian133 and a sensitive cultivar Chang15 were obtained. Comparative transcriptomics and whole-genome resequencing were conducted between these two cultivars. The results show that rapid germination under flooding is driven primarily by transcriptional reprogramming rather than by antagonistic gene regulation. Transcriptome-wide analyses revealed a significant enrichment of the amino sugar and nucleotide sugar metabolism pathway in tolerant cultivar. This was further supported by the fact that promoter variants at the key loci OscPGM and OsAGPL1 modulate the expression of these genes and emerge as principal determinants of coleoptile elongation capacity under hypoxia. The identified single-nucleotide polymorphisms (SNPs) within these regulatory regions provide promising molecular targets for marker-assisted breeding of DSR cultivars. Full article

Climate change causes major agricultural losses, driven both by the rise of plant diseases and by extreme weather events such as droughts and floods. Increased precipitation can lead to waterlogging of important crops. The roots of plants submerged in water have limited access to oxygen, which leads to hypoxia, which, in turn, reduces plant resistance to other factors, e.g., plant pathogens. On the other hand, beneficial microorganisms can help plants oppose abiotic stress, e.g., by producing plant hormones or osmoprotectants such as trehalose, to increase plant tolerance to drought. It turns out that plant-beneficial microorganisms can also increase plant resistance to waterlogging. This can be achieved by various mechanisms that involve the production of 1-aminocyclopropane-1-carboxylate (ACC) deaminase, which reduces the amount of ethylene accumulated in the submerged roots. This can stimulate the production of reactive oxygen species scavengers that protect plants from the oxidative stress caused by less efficient anaerobic metabolism, produce plant hormones that help plants to better adapt to low-oxygen conditions, and shape the plant microbiome, supporting plant growth in waterlogging conditions. This review outlines plant responses to waterlogging and discusses examples of microorganisms that improve plant tolerance, focusing on their underlying mechanisms. Full article

Soybean (Glycine max), as an important crop for both oil and grains, is a major source of high-quality plant proteins for humans. Among various natural disasters affecting soybean production, waterlogging is one of the key factors leading to yield reduction. It can cause root rot and seedling death, and in severe cases, even total crop failure. Given the significant differences in responses to waterlogging stress among different soybean varieties, traditional single-trait indicators are insufficient to comprehensively evaluate flood tolerance. In this study, relative seedling length (RSL) was used as a comprehensive evaluation index for flood tolerance. Using a chromosome segment substitution line (CSSL) population derived from SN14 and ZYD00006, we successfully identified seven quantitative trait loci (QTLs) associated with seed waterlogging tolerance. By integrating RNA-Seq transcriptome sequencing and phenotypic data, the functions of candidate genes were systematically verified. Phenotypic analysis indicated that Suinong14 had significantly better flood tolerance than ZYD00006. Further research revealed that the Glyma.05G160800 gene showed a significantly up-regulated expression pattern in Suinong14; qPCR analysis revealed that this gene exhibits higher expression levels in submergence-tolerant varieties. Haplotype analysis demonstrated a significant correlation between different haplotypes and phenotypic traits. The QTLs identified in this study can provide a theoretical basis for future molecular-assisted breeding of flood-tolerant varieties. Additionally, the functional study of Glyma.05G161800 in regulating seed flood tolerance can offer new insights into the molecular mechanism of seed flood tolerance. These findings could accelerate the development of submergence-tolerant rice varieties, enhancing crop productivity and stability in flood-prone regions. Full article

This study aims to select the most suitable submerged plants for the remediation and ecological rehabilitation of nutrient-enriched aquatic environments. The experiment selected Vallisneria natans, Myriophyllum verticillatum, and Elodea nuttallii as research objects. An artificial outdoor pot experiment was conducted with six different levels of ammonia nitrogen: 2, 4, 6, 8, 12, and 16 mg/L. The present study measured the physiological and growth parameters of submerged macrophytes under varying ammonia nitrogen concentrations. The response characteristics of plants to ammonia nitrogen stress were analyzed, and the tolerance thresholds of different submerged macrophyte species to ammonia nitrogen were determined. This enabled us to screen for ammonia nitrogen-tolerant pioneer species suitable for water ecological restoration in eutrophic water bodies. The experiment spanned 28 days. The results showed that the maximum suitable concentration and maximum tolerance concentration of ammonia nitrogen for Vallisneria natans, Myriophyllum verticillatum, and Elodea nuttallii were 2, 4, and 4 mg/L and 4, 12, and 8 mg/L. Submerged plants can grow normally within their maximum ammonia nitrogen tolerance concentration. When the concentration exceeds the maximum tolerance level, the growth of submerged plants is severely stressed by ammonia nitrogen. Low ammonia nitrogen concentrations promote the growth of submerged macrophyte biomass and chlorophyll content as well as the accumulation of dry matter in plants, while high ammonia nitrogen concentrations damage the antioxidant enzyme system and inhibit the growth of submerged plants. The tolerance of the three submerged macrophytes to ammonia nitrogen is as follows: Myriophyllum verticillatum > Elodea nuttallii > Vallisneria natans. Therefore, Myriophyllum verticillatum should be chosen as the ammonia nitrogen-tolerant pioneer species in the ecological restoration of eutrophic water bodies. The research results can provide a theoretical basis for the application of aquatic macrophytes in the treatment of eutrophic water bodies and ecological restoration. Full article

Salicornia species are halophytic plants that thrive in environments with moderate to high salinity. Owing to its high nutritional value and diverse bioactive constituents, Salicornia holds promise for applications in the food, feed, pharmaceutical, cosmetic, and bioenergy sectors. Understanding its salt tolerance mechanisms is important for developing crops suited to saline soils and water. Recent studies have revealed that Salicornia adapts to salinity through diverse physiological, biochemical, and molecular strategies. Despite these advances, a comprehensive synthesis of existing knowledge remains absent, hindering its effective application in crop improvement. In this review, recent advances in the understanding of Salicornia’s salinity tolerance are synthesized, with emphasis placed on key mechanisms: cell wall nano-mechanics, ion regulation and compartmentation, antioxidant defense, osmotic balance, phytohormonal control, signal transduction, transcriptional regulation, and the expression of salt-responsive proteins. The interactions among these mechanisms are also examined, along with their roles in conferring tolerance to additional abiotic stresses such as drought, submergence, and extreme temperatures. Finally, the potential applications of these findings in genetic engineering for improving salt tolerance in crops are discussed, along with proposed directions for future research to promote the use of halophytes in sustainable agriculture. Full article

Global climate change has led to an increased frequency of extreme weather events, with flooding caused by heavy rainfall posing a significant threat to plant growth and survival. Styrax japonicus, a species of ecological and economic importance, exhibits stronger flooding tolerance compared to its congener Styrax tonkinensis. Endogenous hormonal systems in plants are indispensable for integrating growth dynamics, developmental transitions, and ecological stress perception-transduction pathways. To investigate the response of S. japonicus to flooding stress at both hormonal and molecular levels, this study utilized annual seedlings of S. japonicus as experimental material. Two levels of flooding stress, waterlogging and submergence, were applied to examine the variations in endogenous hormone levels in S. japonicus roots under different stress conditions and durations. Combined with transcriptome sequencing, critical genes associated with hormone-mediated signaling and biosynthetic processes were identified. The results showed that the content of the ethylene precursor ACC exhibited a trend of “increase–decrease–increase”, with an earlier decline under submergence compared to waterlogging stress by approximately 10 days. Abscisic acid content sharply decreased at 5 d, followed by an initial increase and subsequent decrease, with higher ABA levels observed under waterlogging stress than under submergence. GA content significantly decreased after 10 d in both stress conditions. KEGG enrichment analysis revealed that the most prominently enriched pathway for DEGs was plant hormone signal transduction under both waterlogging and submergence stress, with 314 and 370 DEGs identified, respectively. Analysis of common genes indicated their association with ethylene, ABA, auxin, and BRs. After further investigation of DEGs in the ethylene and ABA biosynthesis process, we identified key enzyme genes encoding ACS, ACO, and NCED, which are critical for their biosynthesis. Full article

Diseases and weeds occupy a leading place among the factors limiting the yield of agricultural crops, including rice. These factors can be overcome through the use of chemical protective agents, as well as through the creation and introduction into agricultural production of rice varieties resistant to these stressors. The use of DNA marking technologies for target genes of economically valuable traits in the creation of promising varieties allows not only for the identification of genes but also the monitoring of their transmission during crosses and the selection of breeding-valuable genotypes with genes of interest. In addition, this ensures a reduction in the volume of breeding nurseries, as well as time and material costs during variety modeling, and rapid rotation of new high-yield varieties with specified characteristics. We have selected effective marker systems based on the use of DNA marking technologies for target genes for resistance to blast (Pi) and submergence tolerance (Sub1A). These systems allow for precise targeted selection of hybrid plants with these genes in the breeding process. In addition, we have automated the detection of transferred Pi-ta and Pi-b genes, which greatly relieves the DNA analysis during mass screening of breeding material. The final result of this work is the created rice varieties Al’yans, Lenaris and Kapitan with the Pi-ta blast resistance gene and the Pirouette rice variety with the Pi-1, Pi-2, and Pi-33 genes. These varieties exceed the standards by 0.64–2.2 t/ha, and their involvement in production makes it possible to obtain additional products by increasing yields in the amount of about RUB 80 thousand/ha. Full article