Search Results (166)

Background: Agri-food by-products are increasingly recognized as valuable sources of tannins, whose antioxidant properties represent the primary driver of their biological activity across human and animal health. The strong redox-modulating capacity of condensed and hydrolysable tannins provides a unifying mechanistic explanation for their effects on inflammation, metabolism, gut integrity and neuroprotection. Methods: This narrative review synthesizes evidence obtained through a structured literature search across major databases, selecting studies that investigated antioxidant mechanisms of tannin-rich matrices from plant- and processing-derived residues. Results: Condensed tannins, particularly proanthocyanidins, consistently display potent antioxidant activity through radical scavenging, metal chelation and activation of endogenous defenses, thereby underpinning their anti-inflammatory, anti-ischemic, neuroprotective and metabolic actions. Hydrolysable tannins similarly exert strong antioxidative effects that support antimicrobial activity, enzyme modulation and protection against neuroinflammation. In animals, the antioxidant capacity of tannins translates into improved oxidative balance, enhanced immune status, reduced tissue damage, better feed efficiency and mitigation of oxidative stress-linked methane emission pathways. Conclusions: Antioxidant activity emerges as the central, cross-species mechanism through which tannins mediate diverse health benefits. Tannin-rich agri-food by-products therefore represent promising sustainable antioxidant resources, although their efficacy remains influenced by tannin class, degree of polymerization and dosage, warranting further mechanistic and translational research. Full article

This study explores a multi-resource approach for extracting and characterizing l-rhamnose-rich polysaccharides from nine natural biomasses, including green macroalgae (Ulva spp.), sumac species (Rhus spp.), and agro-industrial by-products such as sea buckthorn and sesame cakes. Hot-water and alkaline extractions were performed by biomass type, and the resulting fractions were analyzed using biochemical assays, monosaccharide profiling (HPAEC/PAD and GC/MS-EI), FTIR, and antioxidant activity tests. Extraction yields ranged from <1% in sea buckthorn residues to 15.48% in Ulva spp., which showed the highest recovery. l-rhamnose enrichment varied across biomasses: the highest proportions were found in Ulva extracts and Rhus semialata galls (PRS), reaching up to 44% of total sugars by HPAEC/PAD and 58% by GC/MS-EI. Antioxidant activities also differed markedly. In DPPH assays, the most active extracts were those from sea buckthorn berry cake (PTBA), Rhus coriaria seeds (PRC), and commercial sea buckthorn powder (PPA), with IC₅₀ values of 32, 43, and 42 µg/mL, respectively. Hydroxyl-radical inhibition was also substantial, reaching 83.0% for PTBA, 79.4% for PRC, and 79.9% for Ulva lactuca at 1 g/L, compared with 97.5% for ascorbic acid. These results highlight specific biomasses as promising dual sources of l-rhamnose and natural antioxidants for valorization within a circular bioeconomy. Full article

Swida wilsoniana is an important oil-producing tree species whose fruits are rich in unsaturated fatty acids with high nutritional and medicinal value. Lipases are involved not only in lipid mobilization but also potentially in the regulation of fatty acid composition and oil accumulation in plants. In this study, the fatty acid composition of S. wilsoniana fruits was analyzed using gas chromatography–flame ionization detection (GC-FID), and the three most abundant fatty acids were selected as molecular docking ligands. Based on overall multi-ligand docking performance (including mean affinity across the three ligands), three key lipases—SwL5, SwL8, and SwL12—were identified as having the strongest interactions with these fatty acids. Phylogenetic analysis revealed that SwL5 and SwL12 belong to lipase family II, while SwL8 is classified into family VI. Molecular dynamics simulations were further performed to evaluate the binding stability and to characterize the structural basis of substrate recognition, including key interacting residues. This study provides theoretical insights into the molecular regulation of fatty acid composition in S. wilsoniana, and offers potential gene targets for the genetic improvement of oil quality traits. Full article

Berries—including strawberries, blueberries, raspberries, blackberries, cranberries, and several less commonly cultivated berry species—are highly valued for their sensory quality and rich content of bioactive compounds, yet they are among the most perishable horticultural products. Their soft texture, high respiration rate, and susceptibility to fungal pathogens lead to rapid postharvest deterioration and significant economic losses. This review synthesizes advances in berry postharvest management reported between 2010 and 2025. Conventional strategies such as rapid precooling, cold-chain optimization, controlled and modified atmospheres, and edible coatings are discussed alongside emerging non-thermal technologies, including UV-C light, ozone, cold plasma, ultrasound, biocontrol agents, and intelligent packaging systems. Particular emphasis is placed on the instability of anthocyanins and other phenolic compounds, microbial spoilage dynamics, and the influence of cultivar genetics and preharvest factors on postharvest performance. The review also highlights opportunities for circular-economy applications, as berry pomace, seeds, and skins represent valuable sources of polyphenols, dietary fiber, and seed oils for use in food, nutraceutical, cosmetic, and bio-based packaging sectors. Looking ahead, future research should prioritize integrated, multi-hurdle, low-residue postharvest strategies, the scale-up of non-thermal technologies, and data-driven cold-chain management. Overall, coordinated physiological, technological, and sustainability-oriented approaches are essential to maintain berry quality, reduce postharvest losses, and strengthen the resilience of berry value chains. Full article

Microbial degradation of pectin is a fundamental process for the carbon cycle and a strategic approach for treating industrial residues. This study characterizes a novel marine bacterium, Paenarthrobacter sp. FR1, isolated from East China Sea intertidal sediment, which exhibits the ability to utilize pectin. Its draft genome (4.83 Mb, 62.92% GC content) is predicted to encode 4498 protein-coding genes. Genomic analysis revealed a rich repertoire of Carbohydrate-Active Enzymes (CAZymes) crucial for this process, including 108 glycoside hydrolases (GHs), 7 polysaccharide lyases (PLs), 35 carbohydrate esterases (CEs), and 11 auxiliary activities (AAs). Genomic analysis provides supportive evidence that FR1 may target both homogalacturonan (HG) and rhamnogalacturonan (RG) pectin domains, potentially through complementary hydrolytic and oxidative pathways. Phylogenomic analysis based on Average Nucleotide Identity (ANI, 83.56%) and digital DNA-DNA Hybridization (dDDH, 27.8%) confirmed its status as a potential novel species. Notably, FR1 is a rare Paenarthrobacter isolate with innate pectinolytic capability, a characteristic not previously documented in this genus. This strain’s unique enzymatic machinery highlights its importance in marine carbon cycling and provides a valuable biotechnological resource for degrading pectin-rich wastes. Full article

Proline-, Glutamic acid-, Leucine-rich Protein 1 (PELP1) is a multifunctional nuclear protein essential for ribosome biogenesis and steroid receptor signaling. It contains two hallmark domains: the RIX1 (Ribosome Export 1) domain, which mediates rRNA processing, and the NUC (nucleolar) domain, associated with nucleolar function. While PELP1’s biological roles are well-characterized in mammals, particularly Homo sapiens, its distribution, structural diversity, and evolutionary origin across the domain of life remain largely unexplored. This study addresses this gap by conducting a comprehensive data mining of PELP1 proteins across the NCBI, UniProt, and EukProt databases. A total of 646 PELP1 proteins were identified exclusively in eukaryotes, specifically within the Opisthokonta clade, comprising Fungi, Filasterea, and Metazoa, while no homologs were detected in Bacteria, Viruses, Plants, or Oomycota. Domain analysis revealed that PELP1 proteins contain one RIX1 domain and one or two NUC202 domains. Motif analysis identified LXXLL and PXXP motifs, indicative of receptor-mediated signaling capability, although leucine and proline residues were not universally conserved within these motifs. Amino acid composition analysis showed enrichment of proline, glutamic acid, and cysteine across most PELP1 proteins. Despite low overall sequence identity, structural modeling demonstrated strong conservation of the α-helical fold, with an average root-mean-square deviation (RMSD) of 1.9 Å across species. Evolutionary analysis suggests that ancestral PELP1 emerged before the divergence of opisthokonts, originating from an RIX1-domain-containing protein that subsequently acquired a NUC202 domain. Phylogenetic clustering and sequence identity patterns resolved three major evolutionary lineages corresponding to fungi, filastereans, and metazoans. Overall, these findings reveal that PELP1 proteins exhibit extensive sequence divergence while maintaining a conserved structural architecture, reflecting evolutionary adaptation that preserves functional integrity across opisthokonts. Full article

Agricultural intensification in greenhouse systems leads to a substantial accumulation of pesticides, yet its role in reshaping soil microbial interactions and their network stability remains poorly understood. This study reveals a critical ecological paradox: contrary to classical theory, greenhouse soils under chronic pesticide contamination exhibit significantly enhanced network stability (quantified as the robustness of network global efficiency under targeted node removal simulations) despite a concurrent sharp decline in bacterial diversity. We investigated this counter-intuitive phenomenon by integrating 16S rRNA sequencing, motif-based network analysis, and resilience modeling. Our findings suggest that this enhanced stability is not explained by species richness but, rather, coincides with a fundamental restructuring of the network’s local interaction architecture. Pesticide residues, acting as a strong deterministic selection pressure, shaped the microbial community into a “low-aggregation, high-redundancy” network topology. This was characterized by a decrease in highly clustered, “brittle” interaction motifs (e.g., M3-2) and an increase in sparse triangular anti-motifs (e.g., M3-1). This new architecture mitigates the risk of cascading failures, thereby elevating the network’s collapse threshold. Triazole fungicides (e.g., Tricyclazole and Hexaconazole) were significantly associated with this structural shift. Our study establishes a novel mechanistic link from pesticide stress to motif-level restructuring and enhanced system stability, offering new insights for assessing the health of highly stressed agricultural ecosystems. Full article

This study explores the efficacy of plasma-activated water (PAW), produced using a laboratory-made pin-hole air plasma jet, in the reduction of pesticide residues, including clothianidin, thiamethoxam, and propoxur. The physicochemical analysis indicated that PAW’s pH decreased significantly with longer discharge times, while oxidation–reduction potential (ORP) and electrical conductivity (EC) increased. Nitrogen and oxygen species in the plasma state were confirmed using optical emission spectroscopy. These results reflected the formation of rich reactive oxygen and nitrogen species (ROS and RNS), including hydroxyl radicals, hydrogen peroxide, and nitrate, contributing to its strong oxidative properties. The optimal PAW parameters for pesticide degradation were determined, and pesticide reduction was assessed using high-performance liquid chromatography (HPLC) and liquid chromatography–mass spectrometry (LC-MS). After 25 min of treatment, maximum reduction rates of 65%, 93%, and 88% were achieved for clothianidin, thiamethoxam, and propoxur, respectively. Only clothianidin yielded a single degradation product which is suggested to be formed by cyclic rearrangement following the loss of Cl and NO₂, while those of thiamethoxam and propoxur were not detected. PAW produced by atmospheric pin-hole air plasma jet demonstrated superior degradation efficiency with minimal toxic by-product formation. The findings contribute valuable insights into sustainable practices for environmental detoxification. Full article

This study aimed to develop an efficient and environmentally sustainable method for extracting bioactive compounds from juçara palm (Euterpe edulis Mart.) fruit residues using deep eutectic solvents (DES) and conventional solvents, combined with ultrasound-assisted extraction (UAE). Seven DES formulations based on choline chloride (ChCl) and different hydrogen bond donors (glycerol, glucose, and organic acids) were prepared, and their performance was compared with water, ethanol, and ethanol/water mixtures. The phenolic composition, anthocyanins and antioxidant activity of the extracts were determined using spectrophotometric assays (Folin–Ciocalteu, DPPH, ABTS, and FRAP) and ESI–MS/MS analysis. The results showed that DES exhibited higher efficiency in recovering total phenolic compounds, anthocyanins and ABTS compared to conventional solvents, particularly in the ChCl–glycerol system. ESI–MS/MS analyses monitored around 40 phenolic compounds, including phenolic acids, flavanones, flavonoids, and anthocyanins. Acidic solvents favored anthocyanin extraction and stability, while ethanol- and glycerol-based systems provided broader compound profiles. The use of DES proved to be a green and selective alternative for obtaining extracts rich in bioactive compounds, enhancing the value of juçara residues and contributing to the sustainability of the species production chain. Full article

Background/Objectives: Hepcidin is a cysteine-rich antimicrobial peptide that links iron homeostasis and innate immunity in vertebrates, but its functions in amphibians remain poorly understood. The Chinese spiny frog (Quasipaa spinosa) is an economically important species that suffers serious losses from bacterial diseases. This study aimed to identify and functionally characterize a hepcidin homolog (QsHep) from Q. spinosa, focusing on its antibacterial activity, immunomodulatory effects on primary macrophages, and protective efficacy against Elizabethkingia miricola infection. Methods: The QsHep gene was cloned and analyzed, its tissue distribution and inducible expression were examined by qRT-PCR, and the synthetic peptide was tested for antimicrobial, membrane-disruptive, and immunomodulatory activities in vitro, as well as for in vivo protection in an E. miricola infection model. Results: QsHep encodes a typical preprohepcidin with a signal peptide, prodomain, and a conserved mature peptide containing eight cysteine residues. QsHep was widely expressed, with the highest levels in liver, and was significantly upregulated in liver and spleen following bacterial challenge. Synthetic QsHep displayed broad-spectrum antibacterial activity, including strong inhibition of E. miricola, and induced dose-dependent membrane damage in E. miricola. QsHep showed no obvious cytotoxicity but significantly enhanced chemotaxis, phagocytic activity, and respiratory burst in primary macrophages. In vivo, QsHep treatment markedly improved the survival of E. miricola-infected frogs in a dose-dependent manner. Conclusions: QsHep is an amphibian hepcidin that combines membrane-disruptive antibacterial activity with the activation of macrophage effector functions and confers significant protection against bacterial infection in vivo. These findings expand our understanding of hepcidin-mediated innate immunity in amphibians and highlight QsHep as a promising peptide candidate for controlling bacterial diseases in frog aquaculture. Full article

Silicon (Si) may benefit the growth and physiology of various cultivated species, especially under stress conditions. Here, we hypothesized that soil Si supplying as Ca₂SiO₄ would increase the drought tolerance and water use efficiency of young Coffea arabica L. (Arabica coffee) plants, by maintaining shoot water status and photosynthesis under low water availability. To test such a hypothesis, morphological and physiological (leaf water potential, leaf gas exchange, photochemical activity, chlorophyll content) traits of coffee plants were evaluated under varying soil Ca₂SiO₄ applications (0, 3000, 6000 kg ha⁻¹) and water availability. The chemical composition of plant tissues was evaluated under well-watered conditions after six months of Ca₂SiO₄ application, with fertilized plants showing higher concentrations of Ca (leaves and roots) and B (all plant organs) as compared to plants not supplied with Ca₂SiO₄ (control treatment). As there were no changes in Si concentration in plant organs under Ca₂SiO₄ application, our data indicate that the coffee species is a Si non-accumulator, or at least the cultivar ‘Catuaí Vermelho’ evaluated herein. Additionally, the photosynthetic capacity of coffee plants increased with 6000 kg Ca₂SiO₄ ha⁻¹ compared to the control under well-watered conditions, as given by increases in gross and net photosynthesis under light saturation, light saturation point, maximum RuBisCO carboxylation rate, maximum electron transport-dependent RuBP regeneration, and maximum rate of triose phosphate use. Such photosynthetic improvements underlined high leaf CO₂ assimilation, transpiration, carboxylation efficiency, and chlorophyll content in plants grown under Si supplying and well-watered conditions. The negative impact of water deficit on leaf gas exchange was alleviated by Ca₂SiO₄ application, but the instantaneous water use efficiency was maintained as similar in both water regimes, as expected for Si non-accumulator species. Morphologically, coffee stem diameter was increased under Ca₂SiO₄ application, regardless of water regime. In conclusion, our data revealed that high Ca₂SiO₄ doses benefit coffee performance and also suggest that the use of steel slag—an industrial byproduct rich in Ca₂SiO₄—can be considered as a sustainable practice for residue recycling in agriculture while improving C. arabica growth and physiology under varying water availability. Full article

To investigate the combined impacts of temperature and plant residues on the mineralization capacity of soil organic matter, in addition to the impact on the taxonomic composition and activity of the soil microbiome, a 364-day experiment involving gray forest soil (Greyzemic Phaeozem Albic) was conducted under controlled laboratory conditions. Three substrate treatments were applied, control (C), amendment with aspen leaves (L), and amendment with aspen branches (B), combined with three temperature regimes (2, 12, and 22 °C). The results showed that long-term experimental warming reduced microbial alpha diversity (number of species and richness), increased microbial respiration and decomposition rates, and altered community composition. Over the year, the percentage of mineralization of added carbon was higher for leaves (29.9%–57.8%) than for branches (20.1%–47.6%). The efficiency of organic matter decomposition increased by 1.5- to 2-fold between 2 and 12 °C. Across all treatments, Proteobacteria were found to be the dominant phylum. According to α-diversity analysis, leaves served as the most preferred substrate for enhancing species representation. β-diversity analysis results indicated that temperature was the most significant factor shaping the microbial community’s structure. Our research findings provide new insights into soil organic matter formation and highlight the need for further research on microbial functional genes. Full article

Global population growth, climate change, and the environmental impact of livestock production have accelerated the search for sustainable and efficient protein sources. Fruiting bodies (mushrooms) and mycelial biomass have emerged as promising alternatives due to their high nutritional quality, low ecological footprint, and compatibility with circular bioeconomy principles. This review highlights the nutritional, biotechnological, and environmental aspects of fungal proteins obtained from both fruiting bodies and mycelial biomass of Basidiomycetes. Emphasis is placed on amino acid composition, protein digestibility, and advances in cultivation and fermentation systems for large-scale production. Submerged and solid-state fermentation processes are analyzed in terms of scalability, resource efficiency, and integration with agro-industrial residues for sustainable bioprocessing. Comparative analyses reveal that mycelial biomass production achieves high protein yields with significantly reduced land, water, and energy requirements compared to conventional protein sources. Emerging fungal species such as Schizophyllum commune and Auricularia polytricha demonstrate strong potential for producing protein-rich mycelia applicable to functional and plant-based foods. Finally, the review discusses current technological innovations, regulatory frameworks, and market perspectives that position fungal biomass as a strategic component in the ongoing global protein transition. Full article

Cistus ladanifer L., commonly known as gum rockrose, is a Mediterranean shrub of growing interest due to its valuable essential oils (EOs) and labdanum resin. This review synthesizes current knowledge on the chemical composition and biological activities of EOs and hydrolates from C. ladanifer across Mediterranean regions, with particular emphasis on Spain, Portugal, Morocco, and France. α-Pinene, viridiflorol, and camphene were found to be the major constituents in the EOs with antioxidant and antimicrobial properties. Additionally, the identified biological properties have prompted studies exploring innovative strategies such as nanoparticle encapsulation, the development of bioactive films, and the incorporation of EOs into food and pharmaceutical packaging. By-products from EO distillation, including lignocellulosic residues, the extraction of phenolic-rich compounds, and hydrolates, have shown potential for value-added applications. Altogether, C. ladanifer represents a versatile species with possible applications in cosmetics, pharmaceutical development, and the food industry. Full article

Spider-derived venoms are a rich source of cystine knot peptides with immense therapeutic potential. Many of these peptides exert unique biological activities through the modulation of ion channels, including of human voltage-gated sodium (Na_V1.1–Na_V1.9) channels. Na_V channel subtypes have diverse functions determined by their tissue and cellular distribution and biophysical properties, and are pathophysiology mediators in various diseases. Therefore, Na_Vs are central in studies of human biology. This work investigated the pharmacological properties of venom of the Thai theraphosid Ornithoctonus aureotibialis on Na_V channels. We discovered a predominant venom peptide named Oa1a and assessed its pharmacological properties across human Na_V channel subtypes. Synthetic forms of the peptide Oa1a showed preferential inhibition of Na_V1.1 and Na_V1.7, while recombinant Oa1a displayed a preference for inhibiting Na_V1.2, Na_V1.6, and Na_V1.7. Interestingly, all versions of Oa1a peptides exerted dual pharmacological effect by reducing the peak current and slowing fast inactivation of Na_V1.3, consistent with Oa1a having more than one binding site on Na_V channels. Such complex pharmacology was previously observed for a venom peptide in a Central American and Costa Rican tarantula, suggesting a conserved mechanism of action amongst these geographically distinct species. However, Oa1a lacked activity in the T-type channels observed in the tarantula peptide from Central America. Structure–function relationships investigated using molecular modelling showed that the dual pharmacology is driven by a conserved mechanism utilizing a mix of aromatic and charged residues, while the T-type activity appears to require additional charged residues in loop 2 and fewer positive charges in loop 4. Future structure–activity relationship studies of Oa1a will guide the development of pharmacological tools as well as next-generation drugs to treat Na_V channel dysfunction associated with neurological disorders. Full article