Search Results (1,706)

Recently, how to improve the aquaculture efficiency of sea cucumber Apostichopus japonicus and promote the sustainable development of its artificial cultivation has become an increasingly important issue. The pond water environment plays important roles in the survival rate and growth of A. japonicus seedlings. This study investigated the changes in water quality and plankton from June to November in A. japonicus ponds. The seawater temperature, pH, dissolved oxygen, salinity, nitrogen, and active phosphate contents were measured, and the planktonic species were detected and identified. The results showed that the seawater temperature ranged from 11.2 to 29.9 °C, and the highest temperature did not exceed the tolerance survival limits of A. japonicus. The changes in pH, dissolved oxygen, and salinity were also suitable for growth. A total of six phyla and 14 species of planktonic algae were detected, among which diatoms were dominant, and the dominant species changed over time. In the early stage, it was Chroomonas acuta, then, after it was Nitzschia sp., and then it returned to C. acuta again later. The biomass and density of algae peaked in week 5 (p < 0.05), but decreased to their lowest in week 18. The changes in chlorophyll-a content were consistent with the biomass of algae. Both the chlorophyll-a and pheophytin contents peaked in weeks 5 and 10 (p < 0.05). The changes in suspended particulate matter (SPM) and particulate organic matter (POM) were synchronized, and they peaked in weeks 5 and 12. These results suggested that the planktonic algae have the functions of a food supply and an environmental indication, and changes in chlorophyll-a, pheophytin, SPM, and POM support the food source reserve for A. japonicus. This study provides important information for the artificial cultivation of sea cucumber seedlings in a pond, and it is useful to promote the sustainable development of the sea cucumber industry. Full article

Acid mine drainage (AMD) and acid-generating mine wastes exhibit low pH, high sulfate levels, and complex multi-metal loads that strain conventional treatment. Thermoacidophilic red algae of the order Cyanidiales, particularly Galdieria sulphuraria (G. sulphuraria), have attracted interest as a biological option because they tolerate extreme acidity and elevated temperatures, grow under low light in mixotrophic or heterotrophic modes, and display rapid metal binding at the cell surface. This review synthesizes about two decades of peer-reviewed work to clarify how G. sulphuraria can be deployed as a practical module within mine water treatment trains. We examine the mechanisms of biosorption and bioaccumulation and show how they map onto two distinct configurations. Processed freeze-dried biomass functions as a regenerable sorbent for rare earth elements (REEs) and selected transition metals in packed beds with acid elution for recovery. Living cultures serve as polishing units for divalent metals and, when present, nutrients or dissolved organics under low light. We define realistic operating windows centered on pH 2–5 and temperatures of approximately 25–45 °C, and we identify matrix effects that govern success, including competition from ferric iron and aluminum, turbidity and fouling risks, ionic strength from sulfate, and suppression of REE uptake by phosphate in living systems. Building on laboratory studies, industrial leachate tests, and ecosystem observations, we propose placing G. sulphuraria upstream of bulk neutralization and outline reporting practices that enable cross-site comparison. The goal is an actionable framework that reduces reagent use and sludge generation while enabling metal capture and potential recovery of valuable metals from mine-influenced waters. Full article

Liquid digestate, a by-product of excess sludge in wastewater treatment plants (WWTPs), contains high concentrations of organic matter and essential nutrients that could promote plant growth. However, it also contains a significant number of pathogenic and opportunistic pathogenic microorganisms, which present major challenges in terms of its safe application. A sample taken from WWTP “Kubratovo” was treated using plasma devices. The aim was to evaluate the effect of treatment by two types of plasma sources on the content of pathogenic bacteria as well as the chemical composition of the liquid digestate. The Surfaguide plasma source demonstrated a higher disinfection effectiveness (100% for E. coli, Clostridium sp.; over 99% for fecal and total coliforms; 98% for Salmonella sp.). The β-device effectively removed (100%) the following groups: E. coli and Clostridium sp. However, its effectiveness was significantly lower for the other groups. The obtained results show that plasma treatment induces the transformation of nitrogen and phosphorus compounds, resulting in increased nitrite and phosphate concentrations. The application of cold atmospheric plasma disinfection significantly improved the sanitary and compositional characteristics of the liquid digestate. The Surfaguide achieved significantly better results than the β-device, confirming its suitability for sustainable resource recovery and safe agricultural use. Full article

The addition of inhibitors and organic materials in corn fields is an important measure to ensure yield and improve soil fertility. Understanding the effects of the addition of inhibitors and organic material on soil microbial carbon use efficiency (CUE) and microbial mechanisms is crucial for promoting carbon (C) sequestration in agricultural systems. This study explored the effects of the addition of inhibitors (N-(nbutyl) thiophosphoric triamide (NBPT) and 3,4-dimethylpyrazole phosphate (DMPP)) and organic materials (corn stalks and pig manure (PM)) on soil microbial CUE through a field experiment with the continuous addition of inhibitors, corn stalks, and PM incorn fieldss for 7 years. Overall, the application of inhibitors reduced soil microbial CUE by 39.20% by reducing microbial immobilization C and promoting microbial respiration, but did not affect the microbial community structure. Under inhibitor application conditions, the addition of PM improved soil microbial CUE by 37.38%, which was mainly achieved by increasing microbial immobilization C, fungal, and bacterial copies. Long-term addition of organic materials and fertilizers was beneficial to the increase in soil microbial CUE, because the input of nutrients stimulates microbial growth. Although high soil microbial CUE was beneficial to soil C sequestration, it also required appropriate exogenous organic matter addition to ensure soil organic carbon (SOC) increase. In this study, when fertilizer-containing inhibitors were used, combined application with PM was beneficial to improve soil microbial CUE and promote SOC sequestration. Full article

Chemical complexity is not a nuisance to be minimized in origin of life research, it is an enabling condition. This second edition of the Special Issue on the Origin of Life in Chemically Complex Messy Environments gathers contributions that embrace multicomponent mixtures, dynamic geochemical settings, and nonequilibrium processes. The papers collected here survey surface hydrothermal routes to reactive nitriles, groundwater evolution of alkaline lakes, and transition metal sulfide-driven amino acid and amide formation without cyanide. They report one pot nucleoside and nucleotide synthesis from formamide over cerium phosphate, review non aqueous organophosphorus pathways, and probe peptide rich mixtures and formose type networks under serpentinization associated minerals. The issue also advances conceptual frameworks, including atmospheric photochemical signatures for biosignature discrimination, the role of chiral mineral surfaces in enantioseparation, and computational simulations of the origin of LUCA. Together, these studies position messy chemistry as a crucible that turns chemical diversity and environmental heterogeneity into routes toward organization and function. Full article

The aim of the study was to investigate the early response of apple fruit infected with Penicillium expansum (P. expansum) to blue light-emitting diode (LED) light (BLL) irradiation. To focus our study on the interaction between apple fruit, the pathogen, and BLL, the effect of BLL was also studied on apples without P. expansum and P. expansum grown on malt extract agar (MEA). Transcriptome analysis revealed that the most pronounced responses among biological processes were observed in inoculated apples under BLL. The upregulated processes included water transport, response to heat, and response to high light intensity. The defence response of apples was enhanced by the upregulation of thaumatin-like proteins and caffeic acid 3-O-methyltransferase, while the cellular response to phosphate deficiency and the regulation of multicellular organism development were downregulated. In P. expansum grown on apples under BLL, transcriptome analysis revealed downregulation of genes related to signalling, response to organic compounds, and regulation of metabolic and biosynthetic processes, while genes involved in the biosynthesis of secondary metabolites were upregulated. In addition, the expression of patulin cluster genes was predominantly downregulated in P. expansum. The significant upregulation of genes related to cryptochrome inhibition, defence response, and caffeic acid metabolism in apples under BLL, together with the reduced virulence of P. expansum, contributes to the inhibition of fungal growth. Full article

Steroidal compounds lie at the crossroads of inflammation and cancer, where modulation of common signaling pathways creates opportunities for dual-action therapeutic intervention. Accumulating evidence indicates that their anti-inflammatory and antitumor activities are frequently interconnected, reflecting shared molecular mechanisms that regulate immune signaling, oxidative stress, cell proliferation, and apoptosis. This review provides a critical and comparative analysis of major classes of bioactive steroids—including furanosteroids, neo-steroids, aromatic steroids, α,β-epoxy steroids, peroxy steroids, cyanosteroids, nitro- and epithio steroids, halogenated steroids (fluorinated, chlorinated, brominated, iodinated), and steroid phosphate esters—with emphasis on their dual anti-inflammatory and anticancer potential. More than one thousand steroidal metabolites derived from plants, fungi, marine organisms, bacteria, and synthetic sources are surveyed. While the majority exhibit either anti-inflammatory or antineoplastic activity alone, only a limited subset displays potent activity in both domains. Comparative evaluation highlights the structural features that favor dual functionality, including epoxide, peroxide, nitrile, nitro, halogen, and phosphate ester moieties, as well as rearranged or heteroatom-enriched steroidal frameworks. Where available, biological data from in vitro and in vivo assays (IC₅₀ values, enzyme inhibition, cytokine modulation, and antiproliferative effects) are summarized and critically compared. Special attention is given to rare natural metabolites—such as polyhalogenated marine steroids, phosphorylated sterols, and heteroatom-containing derivatives—as well as synthetic analogues designed to enhance cytotoxic or immunomodulatory efficacy. Mechanistically, steroids exhibiting dual activity commonly modulate convergent signaling pathways, including NF-κB, JAK/STAT, MAPK, PI3K/AKT, redox homeostasis, and apoptosis regulation. Collectively, these findings underscore the potential of structurally optimized steroids as multifunctional therapeutic agents and provide a framework for the rational design of next-generation anti-inflammatory and anticancer drugs. Full article

Lipoxygenases are enzymes found in plants, mammals, and other organisms that catalyse the hydroperoxidation of polyunsaturated fatty acids, such as arachidonic, linoleic, and linolenic acids. They have attracted a lot of attention as molecular targets for industrial and biomedical applications, due to their implication in key biological processes, such as plant development and defence, cell growth, as well as immune response and inflammation. Soybean (Glycine max) lipoxygenase (LOX) is a versatile biocatalyst used in biotechnology, pharmaceutical, and food industries. sLOX1, a soybean LOX isoform, is central in various industrial applications; thus, it is of particular interest to develop an efficient sLOX1 isolation process, control its activity, and leverage its potential as an effective industrial biocatalyst, tailoring it to a specific desired outcome. In this study, sLOX1 was extracted and purified from soybean seeds using an optimized protocol that yielded an enzyme preparation with higher activity compared to the commercially available lipoxygenase. Comprehensive biophysical characterization employing dynamic and electrophoretic light scattering, fluorescence, and Fourier-transform infrared spectroscopies revealed that sLOX1 exhibits remarkable structural and functional stability, particularly in sodium borate buffer (pH 9), where it retains activity and integrity up to at least 55 °C and displays minimal aggregation under thermal, ionic, and temporal stress. In contrast, sLOX1 in sodium phosphate buffer (pH 6.8) remained relatively stable against ionic strength and time but showed thermally induced aggregation above 55 °C, while in sodium acetate buffer (pH 4.6), the enzyme exhibited a pronounced aggregation tendency under all tested conditions. Overall, this study provides physicochemical and stability assessments of sLOX1. The combination of enhanced catalytic activity, high purity, and well-defined stability profile across diverse buffer systems highlights sLOX1 as a promising and adaptable biocatalyst for industrial applications, offering valuable insights into optimizing lipoxygenase-based bioprocesses. Full article

Quantitative real-time PCR (qPCR) remains a cornerstone method for analyzing gene expression due to its high sensitivity, specificity, and reproducibility. However, for reliable results in relative quantification studies, the choice of an appropriate reference gene is critical to ensure accurate normalization. The expression of commonly used reference genes can vary depending on developmental stage and experimental conditions, making their validation essential. To date, no validated reference genes have been reported for Agrostemma githago L. (corn cockle, Caryophyllaceae). To facilitate research on genes involved in natural product biosynthesis and specialized metabolism regulation, we aimed to identify the most stable reference genes across various plant organs and cultivation conditions of this species. Drawing on previous literature, we have selected seven housekeeping genes widely used for evaluation: actin, β-tubulin, elongation factor 1α, glyceraldehyde-3-phosphate dehydrogenase, histone H3, translation elongation factor 1, and eukaryotic translation initiation factor 5A1 (for which two primer sets were tested). The nucleotide sequences of these potential reference genes were identified from the A. githago transcriptome. Using qRT-PCR, transcript levels of seven potential reference genes were estimated in 40 different A. githago samples, including 25 in vitro samples under various treatment conditions and 15 soil-grown samples representing A. githago organs in different developmental stages. Expression stability of candidate reference genes was assessed using the RefFinder platform, which combines four commonly applied statistical algorithms: geNorm, NormFinder, BestKeeper, and the comparative Δ-Ct method. The results revealed that the selection of optimal reference genes varied based on the particular organ, developmental stage and condition being examined. TIF5A1-2 (one of the two primer pairs tested) and GAPHD consistently exhibited the most stable expression under various conditions in vitro. EF1α and H3 exhibited superior performance across different organs of soil-grown plants. Moreover, our integrated analysis enabled the identification of the two most stable, universal reference genes suitable for normalization in A. githago under all tested conditions—H3 and TIF5A1-2. Our work provides a robust foundation for future transcriptomic and functional studies of the specialized metabolism of A. githago and other related species. Full article

Sustainable food production for a growing population requires farming practices that reduce chemical inputs while maintaining soil as a living, renewable foundation for productivity. This review synthesizes current advances in understanding how endophytic fungi (EFs) interact with the soil microbiome and contribute to the physicochemical and biological dimensions of soil health in arable ecosystems. We examine evidence showing that EFs enhance plant nutrition through phosphate solubilization, siderophore-mediated micronutrient acquisition, and improved nitrogen use efficiency while also modulating plant hormones and stress-responsive pathways. EFs further increase crop resilience to drought, salinity, and heat; suppress pathogens; and influence key soil properties including aggregation, organic matter turnover, and microbial network stability. Recent integration of multi-omics, metabolomics, and community-level analyses has shifted the field from descriptive surveys toward mechanistic insight, revealing how EFs regulate nutrient cycling and remodel rhizosphere communities toward disease-suppressive and nutrient-efficient states. A central contribution of this review is the linkage of EF-mediated plant functions with soil microbiome dynamics and soil structural processes framed within a translational pipeline encompassing strain selection, formulation, delivery, and field scale monitoring. We also highlight current challenges, including context-dependent performance, competition with native microbiota, and formulation and deployment constraints that limit consistent outcomes under field conditions. By bridging microbial ecology with agronomy, this review positions EFs as biocontrol agents, biofertilizers, and ecosystem engineers with strong potential for resilient, low-input, and climate-adaptive cropping systems. Full article

Municipal wastewater contains high amounts of nitrogen (N) and phosphorus (P), as well as other compounds that are harmful to the environment; however, it can also be used as an algae growth medium. In this study locally (Lithuania) isolated algae Scenedesmus quadricauda were cultivated in local (Vilnius city) municipal wastewater. Data show that Scenedesmus algae can be grown in municipal wastewater as successfully as in Bold’s basal medium for 14 days. Algae cultivation significantly reduced the concentration of organic nitrogen forms and phosphate levels. The nitrogen concentration in wastewater after cultivation was reduced to 8 mg N L⁻¹ (up to 89% reduction in total nitrogen concentration). Phosphorus concentration was reduced to 5.4 mg P L⁻¹ (up to 86%). The analysis indicates that the optimal temperature for S. quadricauda cultivation is 25 °C; temperatures higher or lower than this result in a reduction in algal biomass. A higher amount of light leads to higher yields. No statistically significant differences were found comparing cultivation in BB medium and wastewater under different conditions. The analysis showed that the main factors influencing algae biochemical composition were final total nitrogen concentration and available total nitrogen amount per unit of algae biomass produced, as well as molar N:P ratios. Algae biomass cultivated in wastewater contained a consistent lipid concentration (on average 14.94 ± 2.38%), a lower final total nitrogen concentration, and overall lower total nitrogen availability, leading to higher carbohydrate concentrations (up to 51.10%) and a lower protein content (down to 15.52%). Algae biomass that was cultivated in the BB medium biochemical composition was not dependent on environmental factors and remained consistent (on average 22.89 ± 3.85% carbohydrate, 39.32 ± 3.89% protein, and 13.99 ± 2.21% lipid). Full article

Establishing reliable hydrochemical reference conditions is essential for water quality assessment and for the implementation of the European Union Water Framework Directive, particularly in regions where biological and hydromorphological data remain limited. This study aims to evaluate hydrochemical reference conditions in selected river headwaters of Western Ukraine and to examine the consistency between international and national water quality assessment approaches. Water samples were collected from four headwater and confluence sites and analysed for key physicochemical parameters, including nutrients, organic matter indicators, and major ions. Water quality was assessed using the Water Quality Index (WQI) and the Ukrainian Ecological Quality Index (IE), supported by correlation analysis and principal component analysis to identify dominant drivers of spatial variability. Most parameters complied with international and national standards, although elevated concentrations of ammonium, phosphates, biochemical oxygen demand, and nitrites were observed at specific sites. WQI differentiated headwaters with good and moderate water quality, whereas IE classified all sites as good, indicating methodological differences in sensitivity. Multivariate analysis showed that water quality variability was primarily controlled by biogenic and organic loading, while mineralization parameters reflected background geochemical conditions. The results demonstrate that hydrochemical indices can support the preliminary identification of reference conditions but also highlight systematic differences between assessment frameworks. These findings provide a methodological basis for harmonizing national water quality assessments with international standards and for improving reference site selection in data-limited regions. Full article

The anti-aging gene/protein Klotho (Kl), most present in kidneys, has been well studied in mice (mKl), but not in rats (rKl). This study investigated the renal rKl expression in male and female rats. Sex-related measurement of rKl-controlled electrolytes was performed in plasma/urine samples, as were tests on species differences in renal Kl expression (rats vs. mice). rKl mRNA/protein expression was studied by qRT-PCR/Western-blotting in renal total RNA/cell membranes and its localization by immunofluorescence microscopy. Urine/plasma ions (phosphate/total calcium) and macroelements (phosphorus/calcium) were measured biochemically and by ICP-MS, respectively. In rat kidneys, the rKl mRNA/protein was detected in the cortex, outer and inner stripe but not in the papilla, and was immunolocalized in the basolateral membrane of proximal tubules in the cortex and outer stripe, but not in the intercalating cells of the cortical distal tubules, whereas mKl was observed in the mouse kidney cortex but not the outer stripe. Female-dominant expression of renal rKl, affected by androgen’s inhibitory effect, may have contributed to the sex-related level of urine electrolytes, particularly phosphates. Renal mKl expression was male-dominant. Sex- and species-related differences in renal Kl expression may be relevant for the selection of the sex and/or the model organism in studies addressing aging/mineral homeostasis. Full article

The clinical success of calcium phosphate bone grafts (CPs) largely depends on the body’s immune response. However, traditional biocompatibility tests use healthy organisms and cannot predict effectiveness in patients with common chronic inflammatory diseases. This study examines how inflammation modulates the immune response, in vitro and in vivo, to low-temperature biomimetic CPs: dicalcium phosphate dihydrate (DCPD), octacalcium phosphate (OCP), and hydroxyapatite (HAp). In vitro studies involved human monocytes, macrophages, lymphocytes, and mesenchymal stromal cells (MSCs), with or without pro-inflammatory activation. In vivo biocompatibility was assessed via subcutaneous implantation in rats, with or without Complete Freund’s Adjuvant (CFA)-induced inflammation. Under normal conditions, all CP caused minimal immune reactivity. Inflammation-activated macrophages, however, triggered an acute reaction with significantly increased TNF-α and IL-1β secretion. Healthy and inflamed animals showed sharp contrasts. Although all materials exhibited thickened fibrous capsules during inflammation, biocompatibility varied markedly: DCPD performed best by promoting angiogenesis with minimal inflammation; HAp provoked the most severes response, including tissue necrosis and signs of rejection; OCP showed intermediate effects, with angiogenesis but notable fibrosis. Inflammatory processes critically influence CP biocompatibility; materials biocompatible in healthy organisms can induce fibrosis or rejection under inflammation. Disease-relevant, immune-challenged models are essential to predict clinical efficacy and safety. Full article

The human body’s ability to recover from bone injuries is remarkable; however, in specific conditions, interventions are required to restore function and prevent complications. To accelerate osteogenesis, several strategies have been explored, including grafts, biomaterials, and adjuvant therapies. The aim of this narrative review was to analyze the preclinical evidence regarding the combination of particulate biomaterials and fibrin derivatives for bone regeneration. Publications using hydroxyapatite, bovine bone, β-tricalcium phosphate, and bioglass in association with fibrin glue, heterologous fibrin sealants, or platelet-rich fibrin were examined to identify recurrent experimental patterns and biological outcomes. According to the studies, hydroxyapatite and bovine bone were the most frequently investigated scaffolds, whereas fibrin glue and heterologous fibrin sealants showed consistent adhesion and favorable host response profiles in animal models. β-tricalcium phosphate demonstrated faster remodeling but lower volumetric stability, and bioglass showed high bioactivity in isolated reports. Despite heterogeneity in particle size, fibrin formulations, defect models, and follow-up periods, most studies reported enhanced bone deposition, vascularization, and integration when particulate biomaterials were combined with fibrin-based matrices. Overall, the evidence suggests that these combinations promote more organized and biologically favorable bone healing under experimental conditions. Future translational and clinical research is required to standardize protocols and determine the therapeutic applicability of these strategies in human bone repair. Full article