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Search Results (444)

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13 pages, 1217 KB  
Article
Photodissociation Processes Involving the SiH+ Molecular Ion: New Datasets for Modeling
by V. A. Srećković, H. Delibašić-Marković, L. M. Ignjatović, V. Petrović and V. Vujčić
Data 2025, 10(11), 185; https://doi.org/10.3390/data10110185 - 7 Nov 2025
Viewed by 218
Abstract
This paper investigates the photodissociation of the SiH+ molecular ion, a non-symmetric diatomic species composed of silicon and hydrogen. We provide calculated molecular data and characterize electronic states, deriving cross-sections and spectral absorption rate coefficients as functions of temperature (1000–10,000 [...] Read more.
This paper investigates the photodissociation of the SiH+ molecular ion, a non-symmetric diatomic species composed of silicon and hydrogen. We provide calculated molecular data and characterize electronic states, deriving cross-sections and spectral absorption rate coefficients as functions of temperature (1000–10,000 K) and EUV and UV wavelength. The calculations are performed within a quantum–mechanical framework of bound–free radiative transitions, using ab initio electronic potentials and dipole transition functions as inputs. In addition, we present a straightforward fitting formula that enables practical interpolation of photodissociation cross-sections and spectral rate coefficients, providing a novel closed-form representation of the dataset for modeling purposes. The resulting dataset provides a consistent and accessible reference for advanced photochemical modeling in laboratory plasmas and astrophysical environments. Full article
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18 pages, 4485 KB  
Article
Construction of an Immunosensor Based on the Affinity DNA Functional Ligands to the Fc Segment of IgG Antibody
by Qianyu Yang, Zhiwei Liu, Xinrui Xu, Zihao Zhao, Ze Fan, Bin Du, Jianjie Xu, Jiwei Xu, Jiang Wang, Bing Liu, Xihui Mu and Zhaoyang Tong
Biosensors 2025, 15(11), 747; https://doi.org/10.3390/bios15110747 - 5 Nov 2025
Viewed by 295
Abstract
Over the past few decades, Fc fragment-conjugated proteins, such as Protein A, have been extensively utilized across a range of applications, including antibody purification, site-specific immobilization of antibodies, and the development of biosensing platforms. In this study, building upon our group prior research, [...] Read more.
Over the past few decades, Fc fragment-conjugated proteins, such as Protein A, have been extensively utilized across a range of applications, including antibody purification, site-specific immobilization of antibodies, and the development of biosensing platforms. In this study, building upon our group prior research, we designed and screened an affinity DNA functional ligand (A-DNAFL) and experimentally validated its binding affinity (KD = 6.59 × 10−8) toward mouse IgG antibodies, whose binding performance was comparable to that of protein A. Systematic evaluations were performed to assess the binding efficiency under varying pH levels and ionic strength conditions. Optimal antibody immobilization was achieved in PBST-B buffer under physiological pH 7.2–7.4 and containing approximately 154 mM Na+ and 4 mM K+. Two competitive binding assays confirmed that the A-DNAFL binds to the Fc fragment of murine IgG antibody. Furthermore, molecular docking simulations were employed to investigate the interaction mode, revealing key residues involved in binding as well as the contributions of hydrogen bonding and hydrophobic interactions to complex stabilization. Leveraging these insights, A-DNAFL was utilized as a tool for oriented immobilization of antibodies on the sensing interface, enabling the construction of an immunosensor for ricin detection. Following optimization of immobilization parameters, the biosensor exhibited a detection limit of 30.5 ng/mL with the linear regression equation is lg(Response) = 0.329 lg(Cricin) − 2.027 (N = 9, R = 0.938, p < 0.001)—representing a 64-fold improvement compared to conventional protein A-based methods. The system demonstrated robust resistance to nonspecific interference. Sensing interface reusability was also evaluated, showing only 8.55% signal reduction after two regeneration cycles, indicating that glycine effectively elutes bound antibodies while preserving sensor activity. In summary, the A-DNAFL presented in this study represents a novel antibody-directed immobilization material that serves as a promising alternative to protein A. It offers several advantages, including high modifiability, low production cost, and a relatively small molecular weight. These features collectively contribute to its broad application potential in biosensing, antibody purification, and other areas of life science research. Full article
(This article belongs to the Section Biosensors and Healthcare)
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18 pages, 4926 KB  
Article
Gelatin-Based Zinc-Loaded Hydrogels Constructed with the Assistance of Sodium Alginate and Zinc Sulfate Solution Soaking Method
by Hongrui Chen, Xi Guan, Xianglin He, Qing Zhang, Xingzhong Zhang, Hai Chi, Zhenju Jiang and Jie Tang
Foods 2025, 14(21), 3642; https://doi.org/10.3390/foods14213642 - 24 Oct 2025
Viewed by 290
Abstract
Constructing a zinc delivery system is crucial for scientific zinc supplementation. In this study, gelatin-based zinc-loaded hydrogels were constructed with the assistance of sodium alginate and a ZnSO4 solution soaking method. The zinc loading capacity, texture properties, rheological properties, microstructure, and pH [...] Read more.
Constructing a zinc delivery system is crucial for scientific zinc supplementation. In this study, gelatin-based zinc-loaded hydrogels were constructed with the assistance of sodium alginate and a ZnSO4 solution soaking method. The zinc loading capacity, texture properties, rheological properties, microstructure, and pH sensitivity of hydrogels under different ratios of gelatin to sodium alginate were investigated. Results showed that the loading of zinc by hydrogel was successfully achieved through a ZnSO4 solution soaking method, and increasing the ZnSO4 concentration was conducive to zinc loading and hydrogel structure strengthening. Adding sodium alginate further enhanced the zinc loading capacity of hydrogel. When the concentration of ZnSO4 was 25 wt%, the zinc loading of hydrogel containing only gelatin and hydrogel with a 7:3 ratio of gelatin to sodium alginate was 29 mg/g and 52 mg/g, respectively. In addition, sodium alginate also endowed the hydrogel with a certain pH sensitivity. When the ratio of gelatin to sodium alginate was 7:3, the hydrogel showed obvious pH response behavior. Spectroscopy results revealed that zinc sulfate strengthened the hydrogel structure by inducing hydrophobic interactions and the formation of hydrogen bonds, while Zn2+ was bound to oxygen atoms through coordination bonds in hydrogel. These results could provide new ideas for the construction of zinc-loaded hydrogels. Full article
(This article belongs to the Section Food Physics and (Bio)Chemistry)
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9 pages, 1271 KB  
Communication
Missing Crystal Structure and DFT Study of Calcium Complex Based on 4-(3-Hydroxy-2-methyl-4-oxopyridin-1(4H)-yl) Acetic Acid
by Roman V. Rumyantcev, Marina A. Katkova, Galina S. Zabrodina, Georgy K. Fukin and Sergey Yu. Ketkov
Molbank 2025, 2025(4), M2080; https://doi.org/10.3390/M2080 - 24 Oct 2025
Viewed by 248
Abstract
Recently, 3-hydroxy-4-pyridinones have been extensively studied as chelating bidentate agents of metal ions for various biomedical applications. This study reports the structural characterization and density functional theory (DFT) analysis of centrosymmetric calcium complex based on 4-(3-hydroxy-2-methyl-4-oxopyridin-1(4H)-yl) acetic acid (1). [...] Read more.
Recently, 3-hydroxy-4-pyridinones have been extensively studied as chelating bidentate agents of metal ions for various biomedical applications. This study reports the structural characterization and density functional theory (DFT) analysis of centrosymmetric calcium complex based on 4-(3-hydroxy-2-methyl-4-oxopyridin-1(4H)-yl) acetic acid (1). The structure of complex 1 was determined by X-ray crystallography. The 3-hydroxy-4-pyridinone ligand in the studied complex is bound to the calcium ion in the desired monodentate, non-bridging manner. The calcium ion has a coordination number of six and adopts a distorted octahedral geometry. Analyzed geometric characteristics corresponding to hydrogen bonds in the crystal. The theoretical study of intra- and intermolecular interactions utilized DFT with the PBE0-D3/def2-TZVP (Gaussian Inc., Wallingford, CT, USA) level of theory. The charge redistribution in the ligand was studied in comparison with the free acid molecule. Full article
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28 pages, 6756 KB  
Article
Aldehyde–Aminotriazole Condensation Products as Novel Corrosion Inhibitors for Mild Steel in Hydrochloric Acid
by Daniil R. Bazanov, Yaroslav G. Avdeev, Tatyana A. Nenasheva, Andrey Yu. Luchkin, Dmitrii M. Mazur, Yury B. Makarychev, Tatiana E. Andreeva, Andrey I. Marshakov and Yurii I. Kuznetsov
Polymers 2025, 17(20), 2761; https://doi.org/10.3390/polym17202761 - 15 Oct 2025
Viewed by 393
Abstract
The significance of this study arises from the urgent need to develop new corrosion inhibitors for the oil and gas industry. These inhibitors should be synthesized from readily available raw materials and be capable of providing effective protection for steel structures against corrosion [...] Read more.
The significance of this study arises from the urgent need to develop new corrosion inhibitors for the oil and gas industry. These inhibitors should be synthesized from readily available raw materials and be capable of providing effective protection for steel structures against corrosion when exposed to technological hydrochloric acid solutions over a wide temperature range (20–100 °C). The search for such environmentally acceptable and cost-efficient inhibitors is crucial for improving the durability and operational safety of oilfield equipment under aggressive acidic conditions. A new high-temperature corrosion inhibitor for steel in hydrochloric acid solutions has therefore been developed. The inhibitor, designated CATA, is the product of chemical condensation between cinnamaldehyde and 3-amino-1,2,4-triazole. Its protective action is based on the formation of an organic layer up to 12 nm thick, strongly bound to the steel surface. The results suggest with high probability that this protective film consists of polymeric products formed through chemical transformation of CATA on the corroding metal surface. It was shown that the addition of CATA significantly suppresses the electrode processes of steel, affecting both cathodic and anodic partial reactions as well as the kinetics of hydrogen permeation. Adsorption of CATA on steel is satisfactorily described by the Temkin isotherm. The free energy of adsorption (−ΔGads) was determined to be 54 kJ mol−1, which is characteristic of chemisorption. This unique inhibition mechanism enables effective corrosion protection of steel in HCl solutions over a wide temperature range (20–100 °C). Under the most aggressive experimental conditions (2 M HCl, 100 °C), the addition of 10 mM CATA achieved an inhibition efficiency of 99.6%, with a corrosion rate of 3.3 g m−2 h−1, which represents an outstanding result. Furthermore, for spring steels, even in hot HCl solutions (20–60 °C), CATA strongly suppresses hydrogen uptake and allows complete preservation of their ductility. Full article
(This article belongs to the Special Issue Polymer-Based Coatings for Corrosion Protection)
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25 pages, 714 KB  
Article
Valorization of Quince By-Products Using Natural Deep Eutectic Solvents (NADES): Extraction and In Vitro Digestion of Phenolic Compounds
by Erturk Bekar
Foods 2025, 14(20), 3507; https://doi.org/10.3390/foods14203507 - 15 Oct 2025
Viewed by 473
Abstract
Quince (Cydonia oblonga Mill.) processing generates peel and core by-product fractions that are underexploited resources with untapped potential for valorization in sustainable food systems. In this study, ultrasound-assisted extraction was performed using several choline chloride-based natural deep eutectic solvents (NADES, six formulations [...] Read more.
Quince (Cydonia oblonga Mill.) processing generates peel and core by-product fractions that are underexploited resources with untapped potential for valorization in sustainable food systems. In this study, ultrasound-assisted extraction was performed using several choline chloride-based natural deep eutectic solvents (NADES, six formulations with distinct hydrogen-bond donors) and compared with 70% (v/v) ethanol. Extracts were analyzed for total phenolic content, antioxidant capacity, and individual phenolic compounds by LC-MS/MS, and their bioaccessibility was determined through a standardized in vitro digestion model. Organic acid-based NADES, particularly ChCl:MA (2:1) and ChCl:LA (1:1), yielded significantly higher phenolic contents from the peel than ethanol (up to ~45% increase, p < 0.05), and ChCl:MA maintained superior antioxidant capacity after digestion. In the core fraction, glucose- and glycerol-based NADES promoted the release of bound phenolics, resulting in bioaccessibility values exceeding 100%, indicating the release of previously bound phenolics under digestive conditions. The present study provides novel insights into the effects of NADES on both extraction efficiency and digestibility of quince by-products. These findings highlight quince peel and core as promising raw materials for developing functional food and nutraceutical ingredients, thereby offering a feasible strategy for upcycling fruit-processing residues into health-promoting applications. Full article
(This article belongs to the Section Food Nutrition)
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27 pages, 2930 KB  
Article
Research on a New Shared Energy Storage Market Mechanism Based on Wind Power Characteristics and Two-Way Sales
by Yi Chai, Qinghai Hao, Ce Wang, Yunfei Tian, Jing Peng, Peng Sun and Mao Yang
Electronics 2025, 14(20), 4038; https://doi.org/10.3390/electronics14204038 - 14 Oct 2025
Viewed by 277
Abstract
Against the backdrop of the world’s increasing reliance on renewable energy, the inherent intermittency and volatility of wind and solar energy pose significant challenges to the stability and economic benefits of the power system. In regions rich in renewable energy resources such as [...] Read more.
Against the backdrop of the world’s increasing reliance on renewable energy, the inherent intermittency and volatility of wind and solar energy pose significant challenges to the stability and economic benefits of the power system. In regions rich in renewable energy resources such as Gansu Province, due to low operational efficiency and underdeveloped market mechanisms, the potential of new energy storage systems is often not fully exploited. This paper proposes an integrated shared energy storage model designed to suppress wind power fluctuations and a two-way market trading mechanism designed to maximize social welfare to solve these problems. Firstly, a hybrid energy storage system combining electrochemical- and hydrogen-based energy storage is constructed. The modular coordination strategy is adopted to dynamically allocate power capacity, and the wind energy fluctuation suppression technology is proposed to achieve fluctuation suppression at multiple time scales. Secondly, a combined dual bidding mechanism is introduced, allowing for combined bidding across time periods and resource types, to better capture user preferences and enhance market flexibility. The model is represented as a mixed-integer nonlinear programming problem aimed at maximizing social welfare, and then transformed into a linear equivalence problem to enhance the traceability of the calculation. The branch and bound algorithm is adopted to solve this problem. Finally, the simulation results based on the bidding data of a certain area enhanced the participation of participants and improved the fairness of the market and the overall social welfare. This system effectively enhances the grid-friendliness of renewable energy grid connection and provides a scalable and replicable framework for highly renewable energy systems. Full article
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24 pages, 1093 KB  
Article
An Interval Analysis Method for Uncertain Multi-Objective Optimization of Solid Propellant Formulations
by Jiaren Ren, Ran Wei, Futing Bao and Xiao Hou
Aerospace 2025, 12(10), 865; https://doi.org/10.3390/aerospace12100865 - 25 Sep 2025
Viewed by 405
Abstract
To obtain propellant formulations with superior comprehensive and robustness performance, the study establishes a multi-objective optimization model that accounts for uncertainties. The model adopts a bi-layer structure. The inner layer computes performance bounds to construct uncertainty intervals, which are subsequently transformed into deterministic [...] Read more.
To obtain propellant formulations with superior comprehensive and robustness performance, the study establishes a multi-objective optimization model that accounts for uncertainties. The model adopts a bi-layer structure. The inner layer computes performance bounds to construct uncertainty intervals, which are subsequently transformed into deterministic performance via interval order relations. The outer layer optimizes component mass fractions using MOEA/D (Multi-objective Evolutionary Algorithm Based on Decomposition) to maximize the deterministic performance. The study leverages Large Language Models (LLMs) as pre-trained optimizers to automate the operator design of MOEA/D. Designers can identify formulations that satisfy the performance requirements and robustness criteria by adjusting uncertainty levels and MOEA/D weight coefficients. The results on ZDTs and UFs demonstrate that MOEA/D-LLM achieves approximately a 4.0% improvement in hypervolume values compared to MOEA/D. Additionally, the NEPE propellant optimization case shows that MOEA/D-LLM improves the computational speed by about 13.05% and enhances hypervolume values by around 2.7% compared to MOEA/D. The specific impulse increases by 1.11%, the generation of aluminum oxide and hydrogen chloride decreases by approximately 18.43% and 16.40%, respectively, and the impact sensitivity is reduced by about 1.67%. Full article
(This article belongs to the Section Astronautics & Space Science)
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11 pages, 351 KB  
Article
Short–Range Hard–Sphere Potential and Coulomb Interaction: Deser–Trueman Formula for Rydberg States of Exotic Atomic Systems
by Gregory S. Adkins and Ulrich D. Jentschura
Atoms 2025, 13(9), 81; https://doi.org/10.3390/atoms13090081 - 11 Sep 2025
Cited by 1 | Viewed by 498
Abstract
In exotic atomic systems with hadronic constituent particles, it is notoriously difficult to estimate the strong-interaction correction to energy levels. It is well known that, due to the strength of the nuclear interaction, the problem cannot be solved using Wigner–Brillouin perturbation theory alone. [...] Read more.
In exotic atomic systems with hadronic constituent particles, it is notoriously difficult to estimate the strong-interaction correction to energy levels. It is well known that, due to the strength of the nuclear interaction, the problem cannot be solved using Wigner–Brillouin perturbation theory alone. Recently, high-angular-momentum Rydberg states of exotic atomic systems with hadronic constituents have been identified as promising candidates in the search for new physics in the low-energy sector of the Standard Model. We thus derive a generalized Deser–Trueman formula for the induced energy shift for a general hydrogenic bound state with principal quantum number n and orbital angular momentum quantum number , and we find that the energy shift is given by the formula δE=2αn,β(ah/a0)2+1Eh/n3, where αn,0=1, αn,=s=1(s2n2), β=(2+1)/[(2+1)!!]2, Eh is the Hartree energy, ah is the hadronic radius and a0 is the generalized Bohr radius. The square of the double factorial, [(2+1)!!]2, in the denominator implies a drastic suppression of the effect for higher angular momenta. Full article
(This article belongs to the Section Nuclear Theory and Experiments)
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15 pages, 4674 KB  
Article
Structural and Kinetic Properties of Liver Rhodanese from Coptodon zillii: Implications for Cyanide Detoxification in Gold Mining-Impacted Aquatic Ecosystems
by Oluwaseun E. Agboola, Zainab A. Ayinla, Babamotemi O. Itakorode, Priscilla O. Akinsanya, Raphael E. Okonji, Othuke B. Odeghe, Samuel S. Agboola, Olaiya E. Oluranti, Folake O. Olojo and Babatunji E. Oyinloye
Toxics 2025, 13(9), 750; https://doi.org/10.3390/toxics13090750 - 3 Sep 2025
Viewed by 647
Abstract
The global gold extraction industry has been reported to use cyanide-based recovery processes, which pose environmental effects on water resources. The study examined Coptodon zillii liver rhodanese from a gold mining-impacted reservoir with a specific focus on the enzyme’s critical function in cyanide [...] Read more.
The global gold extraction industry has been reported to use cyanide-based recovery processes, which pose environmental effects on water resources. The study examined Coptodon zillii liver rhodanese from a gold mining-impacted reservoir with a specific focus on the enzyme’s critical function in cyanide detoxification. Rhodanese was purified using successive chromatographic techniques with 5.4 U/mg specific activity and 3.1-fold purification. The molecular weight of the native enzyme was 36 kDa, and the subunits were 17 kDa, indicative of a dimeric structure. Optimal enzymatic activity was recorded at pH 8.0 and 50 °C. The effect of metal ions was significantly varied: the activity was inhibited by BaCl2, CaCl2, NaCl, and MgCl2, and KCl enhanced performance. The kinetic determinations showed Michaelis-Menten kinetics with a Km of 20.0 mM for sodium thiosulfate and 25.0 mM for potassium cyanide. The enzyme’s minimal activity was identified toward 2-mercaptoethanol, ammonium persulfate, and ammonium sulfate, but with evidence of preference for thiosulfate utilization under the substrate specificity tests. The major interactions between the enzyme and the substrate were revealed by the molecular docking experiments. These showed Glu159, Gln161, and Arg173 formed important hydrogen bonds with thiosulfate, while Arg156 and Val172 were also involved. Other substrates are bound to Gln121 and Trp139 residues with much lower binding energy than thiosulfate. The findings increase our understanding of biochemical adaptation process knowledge in anthropogenically stressed environments, showing strategies of ecological resilience. The characterized enzymatic features showed potent cyanide detoxification potential, and the possible applications are in bioremediation strategies for mining-impacted aquatic ecosystems. Full article
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16 pages, 4225 KB  
Article
Numerical Simulations of Large-Amplitude Acoustic Oscillations in Cryogenic Hydrogen at Pipe Exit
by Kian Conroy and Konstantin I. Matveev
Hydrogen 2025, 6(3), 63; https://doi.org/10.3390/hydrogen6030063 - 29 Aug 2025
Viewed by 684
Abstract
Pipe exits into cryogenic systems, such as an exit of a venting or sensor tube inside a cryogenic storage tank, can affect spontaneously occurring acoustic oscillations, known as Taconis oscillations. The amplitude which such oscillations will reach is dependent on losses at the [...] Read more.
Pipe exits into cryogenic systems, such as an exit of a venting or sensor tube inside a cryogenic storage tank, can affect spontaneously occurring acoustic oscillations, known as Taconis oscillations. The amplitude which such oscillations will reach is dependent on losses at the pipe exit that prevent resonant oscillations from growing without bound. Consequently, being able to accurately determine minor losses at a pipe exit is important in predicting the behavior of these oscillations. Current thermoacoustic modeling of such transitions typically relies on steady-flow minor loss coefficients, which are usually assumed to be constant for a pipe entrance or exit. In this study, numerical simulations are performed for acoustic flow at a pipe exit, with and without a wall adjacent to the exit. The operating fluid is cryogenic hydrogen gas, while the pipe radius (2 and 4 mm), temperature (40 and 80 K), and acoustic velocity amplitudes (varying in the range of 10 m/s to 70 m/s) are variable parameters. The simulation results are compared with one-dimensional acoustic models to determine the behavior of minor losses. Results are also analyzed to find harmonics behavior and a build-up of mean pressure differences. Minor losses decrease to an asymptotic value with increasing Reynolds number, while higher temperatures also reduce minor losses (10% reduction at 80 K versus 40 K). A baffle sharply increases minor losses as the distance to pipe exit decreases. These findings can be used to improve the accuracy of oscillation predictions by reduced-order thermoacoustic models. Full article
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16 pages, 1593 KB  
Article
Machine Learning-Based Predictive Modeling for Solid Oxide Electrolysis Cell (SOEC) Electrochemical Performance
by Nathan Gil A. Estrada and Rinlee Butch M. Cervera
Appl. Sci. 2025, 15(17), 9388; https://doi.org/10.3390/app15179388 - 27 Aug 2025
Viewed by 1437
Abstract
Solid oxide electrolysis cells (SOECs) are emerging as a promising technology for high-efficiency and environmentally friendly hydrogen production. While laboratory-scale experiments and physics-based simulations have significantly advanced SOEC research, there remains a need for faster, scalable, and cost-effective methods to predict electrochemical performance. [...] Read more.
Solid oxide electrolysis cells (SOECs) are emerging as a promising technology for high-efficiency and environmentally friendly hydrogen production. While laboratory-scale experiments and physics-based simulations have significantly advanced SOEC research, there remains a need for faster, scalable, and cost-effective methods to predict electrochemical performance. This study explores the feasibility of using machine learning (ML) techniques to model the performance of SOECs with the material configuration LSM-YSZ/YSZ/Ni-YSZ. A dataset of 593 records (from 31 IV curves) was compiled from 12 peer-reviewed sources and used to train and evaluate four ML algorithms: SVR, ANN, XGBoost, and Random Forest. Among these, XGBoost achieved the highest accuracy, with an R2 of 98.39% for cell voltage prediction and 98.10% for IV curve interpolation test under typical conditions. Extrapolation tests revealed the model’s limitations in generalizing beyond the bounds of the training data, emphasizing the importance of comprehensive data coverage. Overall, the results confirm that ML models, particularly XGBoost, can serve as accurate and efficient tools for predicting SOEC electrochemical behavior when applied with appropriate data coverage and guided by materials science concepts. Full article
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28 pages, 5200 KB  
Article
Lewis Acid–Base Adducts of α-Amino Isobutyric Acid-Derived Silaheterocycles and Amines
by Anne Seidel, Erica Brendler, Ana Torvisco, Roland Fischer and Jörg Wagler
Molecules 2025, 30(17), 3501; https://doi.org/10.3390/molecules30173501 - 26 Aug 2025
Viewed by 822
Abstract
The 1:1 stoichiometric reactions of α-amino isobutyric acid (H2Aib) and diaminosilanes of the type SiRR′(NR1R2)2 (SiMe2(imidazol-1-yl)2, SiMe2(NHnPr)2, and SiRR′(pyrrolidin-1-yl)2 with [...] Read more.
The 1:1 stoichiometric reactions of α-amino isobutyric acid (H2Aib) and diaminosilanes of the type SiRR′(NR1R2)2 (SiMe2(imidazol-1-yl)2, SiMe2(NHnPr)2, and SiRR′(pyrrolidin-1-yl)2 with R,R′ = Me,Me, Me,H, Me,Vi, and Et,Et) afforded the pentacoordinate silicon complexes (Aib)SiRR′(HNR1R2) with the release of one equivalent of HNR1R2. Single-crystal X-ray diffraction analyses confirmed the coordination of the N-donor Lewis base (i.e., imidazole, n-propylamine, and pyrrolidine, respectively) in an axial position of the distorted trigonal-bipyramidal Si-coordination sphere, trans to the carboxylate O atom of the Si-chelating Aib-dianion. The N–H moieties of the adduct-forming Lewis bases are involved in N–H⋯O hydrogen bonds with carboxylate groups of adjacent complex molecules, thus supporting the supramolecular structures of these adducts. The equatorially bound NH group of the Aib-dianion is involved in N–H⋯O hydrogen bonds in most cases, and it gives rise to residual dipolar coupling of the 14N nucleus with its directly bound atoms C and Si, thus causing characteristic shapes of both the 29Si and 13C NMR signals of these two atoms in the solid-state spectra. In contrast to the adduct-formation reactions, the analogous conversion of H2Aib and SiMe2(NHtBu)2 did not afford an amine adduct. Instead, a second equivalent of H2Aib entered the reaction, and the ionic silicon complex [tBuNH3]+[(Aib)2SiMe] was obtained and characterized by crystallography and solution NMR spectroscopy. Full article
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17 pages, 1323 KB  
Article
Predicting the Post-Hartree-Fock Electron Correlation Energy of Complex Systems with the Information-Theoretic Approach
by Ping Wang, Dongxiong Hu, Linling Lu, Yilin Zhao, Jingbo Chen, Paul W. Ayers, Shubin Liu and Dongbo Zhao
Molecules 2025, 30(17), 3500; https://doi.org/10.3390/molecules30173500 - 26 Aug 2025
Viewed by 1006
Abstract
Employing some simple physics-inspired density-based information-theoretic approach (ITA) quantities to predict the electron correlation energies remains an open challenge. In this work, we expand the scope of the LR(ITA) (LR means linear regression) protocol to more complex systems, including (i) 24 octane isomers; [...] Read more.
Employing some simple physics-inspired density-based information-theoretic approach (ITA) quantities to predict the electron correlation energies remains an open challenge. In this work, we expand the scope of the LR(ITA) (LR means linear regression) protocol to more complex systems, including (i) 24 octane isomers; (ii) polymeric structures, polyyne, polyene, all-trans-polymethineimine, and acene; (iii) molecular clusters, such as metallic Ben and Mgn, covalent Sn, hydrogen-bonded protonated water clusters H+(H2O)n, and dispersion-bound carbon dioxide (CO2)n, and benzene (C6H6)n clusters. With LR(ITA), one can simply predict the post-Hartree-Fock (such as MP2 and coupled cluster) electron correlation energies at the cost of Hartree-Fock calculations, even with chemical accuracy. For large molecular clusters, we employ the linear-scaling generalized energy-based fragmentation (GEBF) method to gauge the accuracy of LR(ITA). Employing benzene clusters as an illustration, the LR(ITA) method shows similar accuracy to that of GEBF. Overall, we have verified that ITA quantities can be used to predict the post-Hartree-Fock electron correlation energies of various complex systems. Full article
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15 pages, 1908 KB  
Article
Enhancement of Protein–Protein Interactions by Destabilizing Mutations Revealed by HDX-MS
by Yoshitomo Hamuro, Anthony Armstrong, Jeffrey Branson, Sheng-Jiun Wu, Richard Y.-C. Huang and Steven Jacobs
Biomolecules 2025, 15(8), 1201; https://doi.org/10.3390/biom15081201 - 20 Aug 2025
Viewed by 903
Abstract
Enhancing protein–protein interactions is a key therapeutic strategy to ensure effective protein function in terms of pharmacokinetics and pharmacodynamics and can be accomplished with methods like directed evolution or rationale design. Previously, two papers suggested the possible enhancement of protein–protein binding affinity via [...] Read more.
Enhancing protein–protein interactions is a key therapeutic strategy to ensure effective protein function in terms of pharmacokinetics and pharmacodynamics and can be accomplished with methods like directed evolution or rationale design. Previously, two papers suggested the possible enhancement of protein–protein binding affinity via destabilizing mutations. This paper reviews the results of the previous literature and adds new data to show the generality of the strategy that destabilizing the unbound protein without significantly changing the free energy of the complex can enhance protein–protein interactions for therapeutic benefit. The first example presented is that of a variant of human growth hormone (hGHv) containing 15 mutations that improve the binding to the hGH binding protein (hGHbp) by 400-fold while retaining full biological activity. The second example is that of the YTE mutations (M252Y/S354T/T256E) in the Fc region of a monoclonal antibody (mAb). The YTE mutations improve the binding of the mAb to FcRn at pH 6.0 10-fold, resulting in elongated serum half-life of the mAb. In both cases, (i) chemical titration or differential scanning calorimetry (DSC) showed the mutations destabilize the unbound mutant proteins, (ii) isothermal titration calorimetry (ITC) showed extremely favorable enthalpy (ΔH) and unfavorable entropy (ΔS) upon binding to their respective target molecule compared with the wildtype, and (iii) hydrogen/deuterium exchange–mass spectrometry (HDX-MS) revealed that these mutations increase the free energy of unbound mutant protein without significantly affecting the free energy of the bound state, resulting in an enhancement to the binding affinities. The third example presented is that of the JAWA mutations (T437R/K248E) also located in the Fc region of a mAb. The JAWA mutations facilitate antibody multimerization upon binding to cell surface antigens, allowing for enhanced agonism and effector functions. Both DSC and HDX-MS showed that the JAWA mutations destabilize the unbound Fc, although the complex was not characterized due to weak binding. Enhancement of protein–protein interactions through incorporation of mutations that increase the free energy of a protein’s unbound state represents an alternative route to decreasing the protein–protein complex free energy through optimization of the binding interface. Full article
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