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Search Results (871)

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Keywords = habitat parameters

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22 pages, 5363 KiB  
Article
Forecasting Northward Range Expansion of Switchgrass in China via Multi-Scenario MaxEnt Simulations
by Yangzhou Xiang, Suhang Li, Qiong Yang, Jun Ren, Ying Liu, Yang Luo, Ling Zhao, Xuqiang Luo, Bin Yao and Xinzhao Guo
Biology 2025, 14(8), 1061; https://doi.org/10.3390/biology14081061 - 15 Aug 2025
Abstract
Global warming is accelerating the poleward and upward shifts in climatically suitable ranges of species. Panicum virgatum (switchgrass) is recognized for its dual value in China’s dual-carbon strategy: mitigating food–energy land competition and restoring marginal ecosystems. However, the accuracy of habitat projections is [...] Read more.
Global warming is accelerating the poleward and upward shifts in climatically suitable ranges of species. Panicum virgatum (switchgrass) is recognized for its dual value in China’s dual-carbon strategy: mitigating food–energy land competition and restoring marginal ecosystems. However, the accuracy of habitat projections is constrained by three limitations: reliance on North American provenance data, uncalibrated model parameters, and insufficient scenario coverage. To address these, 48 switchgrass occurrence records and 22 climatic–topographic variables were integrated. The MaxEnt model was optimized with ENMeval (RM = 4.0, FC = LQH) and coupled with three SSP scenarios (SSP1-2.6, SSP3-7.0, SSP5-8.5) to quantify habitat area changes and centroid shifts across China. The key findings were as follows: (1) The mean temperature of the coldest quarter (Bio11) and elevation were identified as the key limiting factors for the suitable distribution of switchgrass, with their corresponding optimal thresholds determined as −8.79 to 8.11 °C and 0 to 2893 m, respectively. (2) The current suitable habitat covers 583.58 × 104 km2, concentrated in the North China Plain. (3) Under SSP5-8.5, the high-suitability habitat is projected to reach 229.44 × 104 km2 by the 2090s, with the centroid migrating 305 km northwestward to the Inner Mongolia–Jilin belt. This study highlights the climate–topography coupling that drives northward migration and proposes cold-tolerant cultivar development, priority zoning of marginal lands, and ecological corridor establishment to inform climate-smart biomass energy planning in China. Full article
(This article belongs to the Section Conservation Biology and Biodiversity)
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25 pages, 7157 KiB  
Article
Climate Change Drives Northwestward Migration of Betula alnoides: A Multi-Scenario MaxEnt Modeling Approach
by Yangzhou Xiang, Qiong Yang, Suhang Li, Ying Liu, Yuan Li, Jun Ren, Jiaxin Yao, Xuqiang Luo, Yang Luo and Bin Yao
Plants 2025, 14(16), 2539; https://doi.org/10.3390/plants14162539 - 15 Aug 2025
Abstract
Climate change poses unprecedented challenges to forest ecosystems. Betula alnoides, a tree species with significant ecological and economic value in southern China, has been the subject of studies on its distribution pattern and response to climate change. However, research on the distribution [...] Read more.
Climate change poses unprecedented challenges to forest ecosystems. Betula alnoides, a tree species with significant ecological and economic value in southern China, has been the subject of studies on its distribution pattern and response to climate change. However, research on the distribution pattern of B. alnoides and its response to climate change remains relatively limited. In this study, we developed a MaxEnt model incorporating multiple environmental variables, including climate, topography, soil, vegetation, and human activities, to evaluate model performance, identify key factors influencing the distribution of B. alnoides, and project its potential distribution under various future climate scenarios. Species occurrence data and environmental layers were compiled for China, and model parameters were optimized using the ENMeval package. The results showed that the optimized model achieved an AUC value of 0.956, indicating extremely high predictive accuracy. The four key factors affecting the distribution of B. alnoides were standard deviation of temperature seasonality (Bio4), normalized difference vegetation index (NDVI), mean temperature of driest quarter (Bio9), and annual precipitation (Bio12). Among them, the cumulative contribution rate of climatic factors reached 68.9%, but the influence of NDVI was significantly higher than that of precipitation factors. The current suitable habitat of B. alnoides is mainly concentrated in the southwestern region, covering an area of 179.32 × 104 km2, which accounts for 18.68% of China’s land area. Under the SSP126 scenario, the suitable habitat area first decreases and then increases in the future, while under the SSP370 and SSP585 scenarios, the suitable habitat area continues to shrink, with significant losses in high-suitability areas. In addition, the centroid of the suitable habitat of B. alnoides shows an overall trend of shifting northwestward. This indicates that B. alnoides is highly sensitive to climate change and its distribution pattern will undergo significant changes in the future. In conclusion, the distribution pattern of B. alnoides shows a significant response to climate change, with particularly prominent losses in high-suitability areas in the future. Therefore, it is recommended to strengthen the protection of high-suitability areas in the southwestern region and consider B. alnoides as an alternative tree species for regions facing warming and drying trends to enhance its climate adaptability. Full article
(This article belongs to the Section Plant Modeling)
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36 pages, 1587 KiB  
Article
Long-Term Noninvasive Genetic Monitoring Guides Recovery of the Endangered Columbia Basin Pygmy Rabbits (Brachylagus idahoensis)
by Stacey A. Nerkowski, Paul A. Hohenlohe, Janet L. Rachlow, Kenneth I. Warheit, Jonathan A. Gallie and Lisette P. Waits
Genes 2025, 16(8), 956; https://doi.org/10.3390/genes16080956 - 13 Aug 2025
Viewed by 87
Abstract
Background/Objectives: Loss and fragmentation of habitat from agricultural conversion led to the near extirpation of the pygmy rabbit (Brachylagus idahoensis Merriam, 1891) population in the Columbia Basin (CB) of Washington, USA. Recovery efforts began in 2002 and included captive breeding, translocations from [...] Read more.
Background/Objectives: Loss and fragmentation of habitat from agricultural conversion led to the near extirpation of the pygmy rabbit (Brachylagus idahoensis Merriam, 1891) population in the Columbia Basin (CB) of Washington, USA. Recovery efforts began in 2002 and included captive breeding, translocations from other regions for genetic rescue, and reintroduction into native habitat in three sites: Sagebrush Flat (SBF), Beezley Hills (BH), and Chester Butte (CHB). Methods: We used noninvasive and invasive genetic sampling to evaluate demographic and population genetic parameters on three translocated populations of pygmy rabbits over eight years (2011–2020). For each population, our goal was to use fecal DNA sampling and 19 microsatellite loci to monitor spatial distribution, apparent survival rates, genetic diversity, reproduction, effective population size, and the persistence of CB ancestry. Over the course of this study, 1978 rabbits were reintroduced as part of a cooperative conservation effort between state and federal agencies. Results: Through winter and summer monitoring surveys, we detected 168 released rabbits and 420 wild-born rabbits in SBF, 13 released rabbits and 2 wild-born in BH, and 16 released rabbits in CHB. Observed heterozygosity (Ho) values ranged from 0.62–0.84 (SBF), 0.59–0.80 (BH), and 0.73–0.77 (CHB). Allelic richness (AR) ranged from 4.67–5.35 (SBF), 3.71–5.41 (BH), and 3.69–4.65 (CHB). Effective population (Ne) within SBF varied from 12.3 (2012) to 44.3 (2017). CB ancestry persisted in all three wild populations, ranging from 15 to 27%. CB ancestry persisted in 99% of wild-born juveniles identified in SBF. Apparent survival of juvenile rabbits differed across years (1–39%) and was positively associated with release date, release weight, and genetic diversity. Survival of adults (0–43%) was positively influenced by release day, with some evidence that genetic diversity also positively influenced adult apparent survival. Conclusions: Noninvasive genetic sampling has proven to be an effective and efficient tool in monitoring this reintroduced population, assessing both demographic and genetic factors. This data has helped managers address the goals of the Columbia Basin recovery program of establishing multiple sustainable wild populations within the sagebrush steppe habitat of Washington. Full article
(This article belongs to the Special Issue Advances of Genetics in Wildlife Conservation and Management)
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18 pages, 2355 KiB  
Article
Fragmentation, Ecological Assessment, and Diversity of EU Forest Habitat Types: A Case Study in the Calabria Region Oak Woodlands (Southern Italy)
by Antonio Morabito and Giovanni Spampinato
Forests 2025, 16(8), 1320; https://doi.org/10.3390/f16081320 - 13 Aug 2025
Viewed by 145
Abstract
Habitat fragmentation is one of the main causes of biodiversity loss and the alteration of the structure and function of habitat types. This study aimed to assess the conservation status of forest habitats by examining fragmentation and naturalness. As a case study, we [...] Read more.
Habitat fragmentation is one of the main causes of biodiversity loss and the alteration of the structure and function of habitat types. This study aimed to assess the conservation status of forest habitats by examining fragmentation and naturalness. As a case study, we examined the Oak forests of Calabria, which play an important structural and ecological role in the region. The vegetation analysis enabled us to define six forest communities, corresponding to six habitat types or subtypes, as defined by the EEC Directive 92/43. The ecological characteristics of the habitat types were analyzed using Ellenberg–Pignatti indicators. Temperature (T) and moisture (U) are the most significant ecological factors for distinguishing the different habitat types and are strongly correlated with naturalness. The analysis of landscape parameters revealed that habitat types 91AA* and 9330 are the most fragmented and punctuated, with an observed correlation between naturalness and patch density, a parameter expressing the number of patches per unit area. The study of ecological characteristics in relation to biodiversity and landscape indices contributes to the characterization of oak woodland habitats and provides guidelines for the implementation of active conservation measures. Full article
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27 pages, 12670 KiB  
Article
Integrated Multivariate and Spatial Assessment of Groundwater Quality for Sustainable Human Consumption in Arid Moroccan Regions
by Yousra Tligui, El Khalil Cherif, Wafae Lechhab, Touria Lechhab, Ali Laghzal, Nordine Nouayti, El Mustapha Azzirgue, Joaquim C. G. Esteves da Silva and Farida Salmoun
Water 2025, 17(16), 2393; https://doi.org/10.3390/w17162393 - 13 Aug 2025
Viewed by 175
Abstract
Groundwater quality in arid and semi-arid regions of Morocco is under increasing pressure due to both anthropogenic influences and climatic variability. This study investigates the physicochemical and heavy metal characteristics of groundwater across four Moroccan regions (Tangier-Tetouan-Al Hoceima, Oriental, Souss-Massa, and Marrakech-Safi) known [...] Read more.
Groundwater quality in arid and semi-arid regions of Morocco is under increasing pressure due to both anthropogenic influences and climatic variability. This study investigates the physicochemical and heavy metal characteristics of groundwater across four Moroccan regions (Tangier-Tetouan-Al Hoceima, Oriental, Souss-Massa, and Marrakech-Safi) known for being argan tree habitats. Thirteen groundwater samples were analyzed for twenty-five parameters, including major ions, nutrients, and trace metals. Elevated levels of ammonium, turbidity, electrical conductivity, and dissolved oxygen were observed in multiple samples, surpassing Moroccan water quality standards and indicating significant quality deterioration. Inductively Coupled Plasma-Atomic Emission Spectroscopy (ICP-AES) detected arsenic concentrations exceeding permissible limits in sample AW11 alongside widespread lead contamination in most samples except AW5 and AW9. Spatial patterns of contamination were characterized using Principal Component Analysis (PCA), Hierarchical Cluster Analysis (HCA), K-means clustering, and GIS-based Inverse Distance Weighted (IDW) interpolation. These multivariate approaches revealed marked spatial heterogeneity and highlighted the dual influence of geogenic processes and anthropogenic activities on groundwater quality. To assess consumption suitability, a Water Quality Index (WQI) and Human Health Risk Assessment were applied. As a result, 31% of samples were rated “Fair” and 69% as “Good”, but with notable non-carcinogenic risks, particularly to children, attributable to nitrate, lead, and arsenic. The findings underscore the urgent need for systematic groundwater monitoring and management strategies to safeguard water resources in Morocco’s vulnerable dryland ecosystems, particularly in regions where groundwater sustains vital socio-ecological species such as argan forests. Full article
(This article belongs to the Section Water Quality and Contamination)
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17 pages, 799 KiB  
Article
Temporally Determinate, but Spatially Consistent Breeding Performance of Lesser Spotted Eagle (Clanga pomarina) Along the Southern Periphery of Its Distribution
by Dimitar Demerdzhiev, Dobromir Dobrev, Atanas Delchev, Mihail Iliev, Georgi Georgiev, Nikolay Terziev, Ivaylo Angelov and Volen Arkumarev
Diversity 2025, 17(8), 566; https://doi.org/10.3390/d17080566 - 12 Aug 2025
Viewed by 166
Abstract
Breeding performance encompasses offspring production, their survival rate, fertility, overall reproductive outcome, timing of reproduction, and breeding frequency. It varies in raptor species, being affected by different biotic, abiotic, and anthropogenic factors. The Lesser Spotted Eagle is a monogamous, long-lived, slowly reproducing raptor, [...] Read more.
Breeding performance encompasses offspring production, their survival rate, fertility, overall reproductive outcome, timing of reproduction, and breeding frequency. It varies in raptor species, being affected by different biotic, abiotic, and anthropogenic factors. The Lesser Spotted Eagle is a monogamous, long-lived, slowly reproducing raptor, characterized by site-fidelity and strongly territorial behavior. In this study, we examined data collected over a 10-year period, highlighting the eagles’ main breeding parameters, analyzing whether any of them demonstrated significant trends or spatial or temporal differences over the study period. We also searched for a strict correlation between species breeding density and breeding performance. We found out that the mean occupancy rate of the territories marginally decreased β2 = −0.64 ± 0.27, p = 0.047, as this process was clearly visible in Sakar Mnt. (β2 = −0.66 ± 0.27, p = 0.038), where in 2022, only 67% of the monitored territories were occupied. The overall mean productivity, breeding success, and breeding frequency did not indicate any trend over the years (p > 0.05). Of all tested breeding parameters, occupancy rate (β2 = 0.29 ± 0.14, p = 0.04) and breeding success (β2 = −0.12 ± 0.06, p = 0.04) varied yearly, while productivity (β2 = 0.25 ± 0.12, p = 0.03) and breeding frequency (β2 = 0.27 ± 0.12, p = 0.03) were influenced by density. None of the tested indicators demonstrated significant regional differences, which indicated a temporally determinate, but spatially consistent pattern of breeding performance of the species in this part of its distribution. Recently, the landscape pattern in the south-eastern part of the country was marked by spectacular habitat loss, driven by human activities and natural phenomena, with entire biodiversity facing an uncertain future. Prompt action and urgent decisions are needed to prevent the negative consequences of these imminent threats to the species. Conservation efforts should be focused on the restoration of breeding and foraging habitats. Further research on the response of eagles to the effect of natural (fires) and anthropogenic (habitat transformation) factors, as well as the relationship between breeding performance and different drivers of reproduction, such as diet, weather, habitat features, and presence of intra- and interspecific competitors, would be of crucial significance. Full article
(This article belongs to the Special Issue Conservation and Ecology of Raptors—2nd Edition)
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11 pages, 985 KiB  
Article
Cryoinjuries in Cryopreserved Semen of Ichthyoelephas longirostris with Ethylene Glycol
by Jaider Alonso Martínez-Suarez, José Alonso Espinosa-Araujo and Víctor Atencio-García
Animals 2025, 15(16), 2338; https://doi.org/10.3390/ani15162338 - 10 Aug 2025
Viewed by 210
Abstract
Ichthyoelephas longirostris, commonly known as pataló, is an endemic species from Colombia, categorized as endangered due to habitat degradation and overfishing. In this context, semen cryopreservation emerges as an effective strategy for its conservation. This study evaluated the damage caused by semen [...] Read more.
Ichthyoelephas longirostris, commonly known as pataló, is an endemic species from Colombia, categorized as endangered due to habitat degradation and overfishing. In this context, semen cryopreservation emerges as an effective strategy for its conservation. This study evaluated the damage caused by semen cryopreservation using a cryosolution composed of ethylene glycol (EG) at three inclusion levels (6%, 8%, and 10% v/v), skimmed milk powder (3% w/v), and glucose (6% w/v), all prepared in distilled water. A randomized experimental design was employed, with three treatments and a control (fresh semen), using pooled semen from different males (n = 12). Each sample was analyzed in triplicate. Sperm parameters were evaluated through computer-assisted analysis (CASA), and damage to the plasma membrane, mitochondria, and DNA was assessed via flow cytometry. Fresh semen showed low levels of membrane damage (9.6 ± 6.9%), mitochondrial damage (29.1 ± 16.8%), and DNA fragmentation (0.24 ± 0.13%). In thawed semen, the highest membrane damage was observed with 10% EG (79.3 ± 13.0%), while the highest DNA fragmentation occurred with 6% EG (22.5 ± 21.9%). The cryosolution composed of 8% EG showed the best results, with lower levels of damage in the evaluated structures. These findings suggest that the combination of 8% EG, 3% skimmed milk powder, and 6% glucose is an effective formulation to reduce cellular damage during I. longirostris semen cryopreservation, representing a useful tool for conservation programs of this species. Full article
(This article belongs to the Special Issue Assisted Reproductive Technologies in Production Animals)
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22 pages, 7580 KiB  
Article
Bacterial and Physicochemical Dynamics During the Vermicomposting of Bovine Manure: A Comparative Analysis of the Eisenia fetida Gut and Compost Matrix
by Tania Elizabeth Velásquez-Chávez, Jorge Sáenz-Mata, Jesús Josafath Quezada-Rivera, Rubén Palacio-Rodríguez, Gisela Muro-Pérez, Alan Joel Servín-Prieto, Mónica Hernández-López, Pablo Preciado-Rangel, María Teresa Salazar-Ramírez, Juan Carlos Ontiveros-Chacón and Cristina García-De la Peña
Microbiol. Res. 2025, 16(8), 177; https://doi.org/10.3390/microbiolres16080177 - 1 Aug 2025
Viewed by 283
Abstract
Vermicomposting is a sustainable biotechnological process that transforms organic waste through the synergistic activity of earthworms, such as Eisenia fetida, and their associated microbiota. This study evaluated bacterial and physicochemical dynamics during the vermicomposting of bovine manure by analyzing the microbial composition [...] Read more.
Vermicomposting is a sustainable biotechnological process that transforms organic waste through the synergistic activity of earthworms, such as Eisenia fetida, and their associated microbiota. This study evaluated bacterial and physicochemical dynamics during the vermicomposting of bovine manure by analyzing the microbial composition of the substrate and the gut of E. fetida at three time points (weeks 0, 6, and 12). The V3–V4 region of the 16S rRNA gene was sequenced, and microbial diversity was characterized using QIIME2. Significant differences in alpha diversity (observed features, Shannon index, and phylogenetic diversity) and beta diversity indicated active microbial succession. Proteobacteria, Bacteroidota, and Actinobacteriota were the dominant phyla, with abundances varying across habitats and over time. A significant enrichment of Proteobacteria, Bacteroidota, and the genera Chryseolinea, Flavobacterium, and Sphingomonas was observed in the manure treatments. In contrast, Actinobacteriota, Firmicutes, and the genera Methylobacter, Brevibacillus, Enhygromyxa, and Bacillus, among others, were distinctive of the gut samples and contributed to their dissimilarity from the manure treatments. Simultaneously, the physicochemical parameters indicated progressive substrate stabilization and nutrient enrichment. Notably, the organic matter and total organic carbon contents decreased (from 79.47% to 47.80% and from 46.10% to 27.73%, respectively), whereas the total nitrogen content increased (from 1.70% to 2.23%); these effects reduced the C/N ratio, which is a recognized indicator of maturity, from 27.13 to 12.40. The macronutrient contents also increased, with final values of 1.41% for phosphorus, 1.50% for potassium, 0.89% for magnesium, and 2.81% for calcium. These results demonstrate that vermicomposting modifies microbial communities and enhances substrate quality, supporting its use as a biofertilizer for sustainable agriculture, soil restoration, and agrochemical reduction. Full article
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24 pages, 7997 KiB  
Article
Comparative Analysis of Habitat Expansion Mechanisms for Four Invasive Amaranthaceae Plants Under Current and Future Climates Using MaxEnt
by Mao Lin, Xingzhuang Ye, Zixin Zhao, Shipin Chen and Bao Liu
Plants 2025, 14(15), 2363; https://doi.org/10.3390/plants14152363 - 1 Aug 2025
Viewed by 306
Abstract
As China’s first systematic assessment of high-risk Amaranthaceae invaders, this study addresses a critical knowledge gap identified in the National Invasive Species Inventory, in which four invasive Amaranthaceae species (Dysphania ambrosioides, Celosia argentea, Amaranthus palmeri, and Amaranthus spinosus) [...] Read more.
As China’s first systematic assessment of high-risk Amaranthaceae invaders, this study addresses a critical knowledge gap identified in the National Invasive Species Inventory, in which four invasive Amaranthaceae species (Dysphania ambrosioides, Celosia argentea, Amaranthus palmeri, and Amaranthus spinosus) are prioritized due to CNY 2.6 billion annual ecosystem damages in China. By coupling multi-species comparative analysis with a parameter-optimized Maximum Entropy (MaxEnt) model integrating climate, soil, and topographical variables in China under Shared Socioeconomic Pathways (SSP) 126/245/585 scenarios, we reveal divergent expansion mechanisms (e.g., 247 km faster northward shift in A. palmeri than D. ambrosioides) that redefine invasion corridors in the North China Plain. Under current conditions, the suitable habitats of these species span from 92° E to 129° E and 18° N to 49° N, with high-risk zones concentrated in central and southern China, including the Yunnan–Guizhou–Sichuan region and the North China Plain. Temperature variables (Bio: Bioclimatic Variables; Bio6, Bio11) were the primary contributors based on permutation importance (e.g., Bio11 explained 56.4% for C. argentea), while altitude (e.g., 27.3% for A. palmeri) and UV-B (e.g., 16.2% for A. palmeri) exerted lower influence. Model validation confirmed high accuracy (mean area under the curve (AUC) > 0.86 and true skill statistic (TSS) > 0.6). By the 2090s, all species showed net habitat expansion overall, although D. ambrosioides exhibited net total contractions during mid-century under the SSP126/245 scenarios, C. argentea experienced reduced total suitability during the 2050s–2070s despite high-suitability growth, and A. palmeri and A. spinosus expanded significantly in both total and highly suitable habitat. All species shifted their distribution centroids northward, aligning with warming trends. Overall, these findings highlight the critical role of temperature in driving range dynamics and underscore the need for latitude-specific monitoring strategies to mitigate invasion risks, providing a scientific basis for adaptive management under global climate change. Full article
(This article belongs to the Section Plant Ecology)
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17 pages, 5553 KiB  
Article
Effects of Interspecific Competition on Habitat Shifts of Sardinops melanostictus (Temminck et Schlegel, 1846) and Scomber japonicus (Houttuyn, 1782) in the Northwest Pacific
by Siyuan Liu, Hanji Zhu, Jianhua Wang, Famou Zhang, Shengmao Zhang and Heng Zhang
Biology 2025, 14(8), 968; https://doi.org/10.3390/biology14080968 - 1 Aug 2025
Viewed by 253
Abstract
As economically important sympatric species in the Northwest Pacific, the Japanese sardine (Sardinops melanostictus) and Chub mackerel (Scomber japonicus) exhibit significant biological interactions. Understanding the impact of interspecies competition on their habitat dynamics can provide crucial insights for the [...] Read more.
As economically important sympatric species in the Northwest Pacific, the Japanese sardine (Sardinops melanostictus) and Chub mackerel (Scomber japonicus) exhibit significant biological interactions. Understanding the impact of interspecies competition on their habitat dynamics can provide crucial insights for the sustainable development and management of these interconnected species resources. This study utilizes fisheries data of S. melanostictus and S. japonicus from the Northwest Pacific, collected from June to November between 2017 and 2020. We integrated various environmental parameters, including temperature at different depths (0, 50, 100, 150, and 200 m), eddy kinetic energy (EKE), sea surface height (SSH), chlorophyll-a concentration (Chl-a), and the oceanic Niño index (ONI), to construct interspecific competition species distribution model (icSDM) for both species. We validated these models by overlaying the predicted habitats with fisheries data from 2021 and performing cross-validation to assess the models’ reliability. Furthermore, we conducted correlation analyses of the habitats of these two species to evaluate the impact of interspecies relationships on their habitat dynamics. The results indicate that, compared to single-species habitat models, the interspecific competition species distribution model (icSDM) for these two species exhibit a significantly higher explanatory power, with R2 values increasing by up to 0.29; interspecific competition significantly influences the habitat dynamics of S. melanostictus and S. japonicus, strengthening the correlation between their habitat changes. This relationship exhibits a positive correlation at specific stages, with the highest correlations observed in June, July, and October, at 0.81, 0.80, and 0.88, respectively; interspecific competition also demonstrates stage-specific differences in its impact on the habitat dynamics of S. melanostictus and S. japonicus, with the most pronounced differences occurring in August and November. Compared to S. melanostictus, interspecific competition is more beneficial for the expansion of the optimal habitat (HIS ≥ 0.6) for S. japonicus and, to some extent, inhibits the habitat expansion of S. melanostictus. The variation in migratory routes and predatory interactions (with larger individuals of S. japonicus preying on smaller individuals of S. melanostictus) likely constitutes the primary factors contributing to these observed differences. Full article
(This article belongs to the Special Issue Adaptation of Living Species to Environmental Stress)
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28 pages, 3098 KiB  
Article
Geobotanical Study, DNA Barcoding, and Simple Sequence Repeat (SSR) Marker Analysis to Determine the Population Structure and Genetic Diversity of Rare and Endangered Prunus armeniaca L.
by Natalya V. Romadanova, Nazira A. Altayeva, Alina S. Zemtsova, Natalya A. Artimovich, Alexandr B. Shevtsov, Almagul Kakimzhanova, Aidana Nurtaza, Arman B. Tolegen, Svetlana V. Kushnarenko and Jean Carlos Bettoni
Plants 2025, 14(15), 2333; https://doi.org/10.3390/plants14152333 - 28 Jul 2025
Viewed by 511
Abstract
The ongoing genetic erosion of natural Prunus armeniaca populations in their native habitats underscores the urgent need for targeted conservation and restoration strategies. This study provides the first comprehensive characterization of P. armeniaca populations in the Almaty region of Kazakhstan, integrating morphological descriptors [...] Read more.
The ongoing genetic erosion of natural Prunus armeniaca populations in their native habitats underscores the urgent need for targeted conservation and restoration strategies. This study provides the first comprehensive characterization of P. armeniaca populations in the Almaty region of Kazakhstan, integrating morphological descriptors (46 parameters), molecular markers, geobotanical, and remote sensing analyses. Geobotanical and remote sensing analyses enhanced understanding of accession distribution, geological features, and ecosystem health across sites, while also revealing their vulnerability to various biotic and abiotic threats. Of 111 morphologically classified accessions, 54 were analyzed with 13 simple sequence repeat (SSR) markers and four DNA barcoding regions. Our findings demonstrate the necessity of integrated morphological and molecular analyses to differentiate closely related accessions. Genetic analysis identified 11 distinct populations with high heterozygosity and substantial genetic variability. Eight populations exhibited 100% polymorphism, indicating their potential as sources of adaptive genetic diversity. Cluster analysis grouped populations into three geographic clusters, suggesting limited gene flow across Gorges (features of a mountainous landscape) and greater connectivity within them. These findings underscore the need for site-specific conservation strategies, especially for genetically distinct, isolated populations with unique allelic profiles. This study provides a valuable foundation for prioritizing conservation targets, confirming genetic redundancies, and preserving genetic uniqueness to enhance the efficiency and effectiveness of the future conservation and use of P. armeniaca genetic resources in the region. Full article
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20 pages, 5053 KiB  
Article
Epifaunal Assemblages of the Fan Mussel Atrina fragilis (Mollusca: Bivalvia) in the Sea of Marmara
by Melih Ertan Çinar, Mehmet Baki Yokeş, Deniz Erdogan-Dereli, Sermin Açik and Alper Evcen
Biology 2025, 14(8), 945; https://doi.org/10.3390/biology14080945 - 27 Jul 2025
Viewed by 352
Abstract
Dense aggregations of species in the family Pinnidae give soft substrata a specific characterization. They may influence the biological and physical properties of the surrounding sediments. Bottom-trawl samplings performed in the Sea of Marmara revealed populations of a large pinnid species, particularly at [...] Read more.
Dense aggregations of species in the family Pinnidae give soft substrata a specific characterization. They may influence the biological and physical properties of the surrounding sediments. Bottom-trawl samplings performed in the Sea of Marmara revealed populations of a large pinnid species, particularly at depths of 40–45 m in soft substrata. Both morphological and DNA analyses confirmed the species’ taxonomic identity as Atrina fragilis. This species had a population density ranging from 31 to 469 ind.km−2, and the shell lengths ranged from 21.3 to 31 cm. A total of 47 macrozoobenthic species belonging to eight taxonomic groups were found on the shells of ten live and nine dead A. fragilis individuals. Polychaeta accounted for 53% of the total number of species and 75% of the total number of individuals. Among these species, Protula tubularia and Serpula concharum comprised almost 30% of all epifaunal populations. Community parameters changed according to the shell length and width. Different faunal assemblages were encountered on the shells. Given the ecological significance of A. fragilis as both a habitat-forming and sensitive benthic species, conservation measures should prioritize the protection of known habitats and the regulation of activities that lead to seabed disturbance. Full article
(This article belongs to the Special Issue Epibiosis in Aquatic Environments)
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19 pages, 6150 KiB  
Article
Evaluation of Eutrophication in Small Reservoirs in Northern Agricultural Areas of China
by Qianyu Jing, Yang Shao, Xiyuan Bian, Minfang Sun, Zengfei Chen, Jiamin Han, Song Zhang, Shusheng Han and Haiming Qin
Diversity 2025, 17(8), 520; https://doi.org/10.3390/d17080520 - 26 Jul 2025
Viewed by 218
Abstract
Small reservoirs have important functions, such as water resource guarantee, flood control and drought resistance, biological habitat and maintaining regional economic development. In order to better clarify the impact of agricultural activities on the nutritional status of water bodies in small reservoirs, zooplankton [...] Read more.
Small reservoirs have important functions, such as water resource guarantee, flood control and drought resistance, biological habitat and maintaining regional economic development. In order to better clarify the impact of agricultural activities on the nutritional status of water bodies in small reservoirs, zooplankton were quantitatively collected from four small reservoirs in the Jiuxianshan agricultural area of Qufu, Shandong Province, in March and October 2023, respectively. The physical and chemical parameters in sampling points were determined simultaneously. Meanwhile, water samples were collected for nutrient salt analysis, and the eutrophication of water bodies in four reservoirs was evaluated using the comprehensive nutrient status index method. The research found that the species richness of zooplankton after farming (100 species) was significantly higher than that before farming (81 species) (p < 0.05). On the contrary, the dominant species of zooplankton after farming (7 species) were significantly fewer than those before farming (11 species). The estimation results of the standing stock of zooplankton indicated that the abundance and biomass of zooplankton after farming (92.72 ind./L, 0.13 mg/L) were significantly higher than those before farming (32.51 ind./L, 0.40 mg/L) (p < 0.05). Community similarity analysis based on zooplankton abundance (ANOSIM) indicated that there were significant differences in zooplankton communities before and after farming (R = 0.329, p = 0.001). The results of multi-dimensional non-metric sorting (NMDS) showed that the communities of zooplankton could be clearly divided into two: pre-farming communities and after farming communities. The Monte Carlo test results are as follows (p < 0.05). Transparency (Trans), pH, permanganate index (CODMn), electrical conductivity (Cond) and chlorophyll a (Chl-a) had significant effects on the community structure of zooplankton before farming. Total nitrogen (TN), total phosphorus (TP) and electrical conductivity (Cond) had significant effects on the community structure of zooplankton after farming. The co-linearity network analysis based on zooplankton abundance showed that the zooplankton community before farming was more stable than that after farming. The water evaluation results based on the comprehensive nutritional status index method indicated that the water conditions of the reservoirs before farming were mostly in a mild eutrophic state, while the water conditions of the reservoirs after farming were all in a moderate eutrophic state. The results show that the nutritional status of small reservoirs in agricultural areas is significantly affected by agricultural activities. The zooplankton communities in small reservoirs underwent significant changes driven by alterations in the reservoir water environment and nutritional status. Based on the main results of this study, we suggested that the use of fertilizers and pesticides should be appropriately reduced in future agricultural activities. In order to better protect the water quality and aquatic ecology of the water reservoirs in the agricultural area. Full article
(This article belongs to the Special Issue Diversity and Ecology of Freshwater Plankton)
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26 pages, 11770 KiB  
Article
Flow Dynamics and Local Scour Around Seabed-Mounted Artificial Reefs: A Case Study from Torbay, UK
by Amir Bordbar, Jakub Knir, Vasilios Kelefouras, Samuel John Stephen Hickling, Harrison Short and Yeaw Chu Lee
J. Mar. Sci. Eng. 2025, 13(8), 1425; https://doi.org/10.3390/jmse13081425 - 26 Jul 2025
Viewed by 336
Abstract
This study investigates the flow dynamics and local scour around a Reef Cube® artificial reef deployed in Torbay, UK, using computational fluid dynamics. The flow is modelled using Reynolds-Averaged Navier–Stokes (RANS) equations with a k-ω SST turbulence model. A novel hydro-morphodynamic model [...] Read more.
This study investigates the flow dynamics and local scour around a Reef Cube® artificial reef deployed in Torbay, UK, using computational fluid dynamics. The flow is modelled using Reynolds-Averaged Navier–Stokes (RANS) equations with a k-ω SST turbulence model. A novel hydro-morphodynamic model employing the generalized internal boundary method in HELYX (OpenFOAM-based) is used to simulate scour development. Model performance was validated against experimental data for flow fields, bed shear stress, and local scour. Flow simulations across various scenarios demonstrated that parameters such as the orientation angle and arrangement of Reef Cubes significantly influence flow patterns, bed shear stress, and habitat suitability. The hydro-morphodynamic model was used to simulate scouring around a reef cube in the Torbay marine environment. Results indicate that typical tidal flow velocity flow in the region is barely sufficient to initiate sediment motion, whereas extreme flow events, represented by doubling the mean flow velocity, significantly accelerate scour development, producing holes up to ten times deeper. These findings underscore the importance of considering extreme flow conditions in scour analyses due to their potential impact on the stability and failure risk of AR projects. Full article
(This article belongs to the Section Ocean Engineering)
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25 pages, 14199 KiB  
Article
A Nonlinear Cross-Diffusion Model for Disease Spread: Turing Instability and Pattern Formation
by Ravi P. Gupta, Arun Kumar and Shristi Tiwari
Mathematics 2025, 13(15), 2404; https://doi.org/10.3390/math13152404 - 25 Jul 2025
Viewed by 346
Abstract
In this article, we propose a novel nonlinear cross-diffusion framework to model the distribution of susceptible and infected individuals within their habitat using a reduced SIR model that incorporates saturated incidence and treatment rates. The study investigates solution boundedness through the theory of [...] Read more.
In this article, we propose a novel nonlinear cross-diffusion framework to model the distribution of susceptible and infected individuals within their habitat using a reduced SIR model that incorporates saturated incidence and treatment rates. The study investigates solution boundedness through the theory of parabolic partial differential equations, thereby validating the proposed spatio-temporal model. Through the implementation of the suggested cross-diffusion mechanism, the model reveals at least one non-constant positive equilibrium state within the susceptible–infected (SI) system. This work demonstrates the potential coexistence of susceptible and infected populations through cross-diffusion and unveils Turing instability within the system. By analyzing codimension-2 Turing–Hopf bifurcation, the study identifies the Turing space within the spatial context. In addition, we explore the results for Turing–Bogdanov–Takens bifurcation. To account for seasonal disease variations, novel perturbations are introduced. Comprehensive numerical simulations illustrate diverse emerging patterns in the Turing space, including holes, strips, and their mixtures. Additionally, the study identifies non-Turing and Turing–Bogdanov–Takens patterns for specific parameter selections. Spatial series and surfaces are graphed to enhance the clarity of the pattern results. This research provides theoretical insights into the implications of cross-diffusion in epidemic modeling, particularly in contexts characterized by localized mobility, clinically evident infections, and community-driven isolation behaviors. Full article
(This article belongs to the Special Issue Models in Population Dynamics, Ecology and Evolution)
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