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21 pages, 3648 KiB  
Article
Preparation and Physicochemical Evaluation of Ionically Cross-Linked Chitosan Nanoparticles Intended for Agricultural Use
by Maria Karayianni, Emi Haladjova, Stanislav Rangelov and Stergios Pispas
Polysaccharides 2025, 6(3), 67; https://doi.org/10.3390/polysaccharides6030067 (registering DOI) - 1 Aug 2025
Abstract
The search for sustainable, economically viable, and effective plant protection strategies against pathogenic bacteria, fungi, and viruses is a major challenge in modern agricultural practices. Chitosan (CS) is an abundant cationic natural biopolymer known for its biocompatibility, low toxicity, and antimicrobial properties. Its [...] Read more.
The search for sustainable, economically viable, and effective plant protection strategies against pathogenic bacteria, fungi, and viruses is a major challenge in modern agricultural practices. Chitosan (CS) is an abundant cationic natural biopolymer known for its biocompatibility, low toxicity, and antimicrobial properties. Its potential use in agriculture for pathogen control is a promising alternative to traditional chemical fertilisers and pesticides, which raise concerns regarding public health, environmental protection, and pesticide resistance. This study focused on the preparation of chitosan nanoparticles (CS-NPs) through cross-linking with organic molecules, such as tannic acid (TA). Various formulations were explored for the development of stable nanoscale particles having encapsulation capabilities towards low compounds of varying polarity and with potential agricultural applications relevant to plant health and growth. The solution properties of the NPs were assessed using dynamic and electrophoretic light scattering (DLS and ELS); their morphology was observed through atomic force microscopy (AFM), while analytical ultracentrifugation (AUC) measurements provided insights into their molar mass. Their properties proved to be primarily influenced by the concentration of CS, which significantly affected its intrinsic conformation. Additional structural insights were obtained via infrared and UV–Vis spectroscopic measurements, while detailed fluorescence analysis with the use of three different probes, as model cargo molecules, provided information regarding the hydrophobic and hydrophilic microdomains within the particles. Full article
(This article belongs to the Collection Bioactive Polysaccharides)
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29 pages, 10502 KiB  
Article
A Comparative Bioinformatic Investigation of the Rubisco Small Subunit Gene Family in True Grasses Reveals Novel Targets for Enhanced Photosynthetic Efficiency
by Brittany Clare Thornbury, Tianhua He, Yong Jia and Chengdao Li
Int. J. Mol. Sci. 2025, 26(15), 7424; https://doi.org/10.3390/ijms26157424 (registering DOI) - 1 Aug 2025
Abstract
Ribulose bisphosphate carboxylase (RuBisCO) is the primary regulator of carbon fixation in the plant kingdom. Although the large subunit (RBCL) is the site of catalysis, RuBisCO efficiency is also influenced by the sequence divergence of the small subunit (RBCS). This project compared the [...] Read more.
Ribulose bisphosphate carboxylase (RuBisCO) is the primary regulator of carbon fixation in the plant kingdom. Although the large subunit (RBCL) is the site of catalysis, RuBisCO efficiency is also influenced by the sequence divergence of the small subunit (RBCS). This project compared the RBCS gene family in C3 and C4 grasses to identify genetic targets for improved crop photosynthesis. Triticeae/Aveneae phylogeny groups exhibited a syntenic tandem duplication array averaging 326.1 Kbp on ancestral chromosomes 2 and 3, with additional copies on other chromosomes. Promoter analysis revealed a paired I-box element promoter arrangement in chromosome 5 RBCS of H. vulgare, S. cereale, and A. tauschii. The I-box pair was associated with significantly enhanced expression, suggesting functional adaptation of specific RBCS gene copies in Triticaeae. H. vulgare-derived pan-transcriptome data showed that RBCS expression was 50.32% and 28.44% higher in winter-type accessions compared to spring types for coleoptile (p < 0.05) and shoot, respectively (p < 0.01). Molecular dynamics simulations of a mutant H. vulgare Rubisco carrying a C4-like amino acid substitution (G59C) in RBCS significantly enhanced the stability of the Rubisco complex. Given the known structural efficiency of C4 Rubisco complexes, G59C could serve as an engineering target for enhanced RBCS in economically crucial crop species which, in comparison, possess less efficient Rubisco complexes. Full article
(This article belongs to the Special Issue Molecular Genetics, Genomics and Breeding in Field Crops)
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25 pages, 2666 KiB  
Article
Hormonal Balance in Relation to Expression of Selected Genes Connected with Hormone Biosynthesis and Signalling—The Effect of Deacclimation Process in Oilseed Rape
by Magdalena Rys, Jan Bocianowski, Michał Dziurka, Barbara Jurczyk, Julia Stachurska, Piotr Waligórski and Anna Janeczko
Int. J. Mol. Sci. 2025, 26(15), 7408; https://doi.org/10.3390/ijms26157408 (registering DOI) - 1 Aug 2025
Abstract
Global climate change is causing increasing fluctuations in winter temperatures, including episodes of warm conditions above 9 °C. Such events disrupt cold acclimation in plants and can induce deacclimation, reducing frost tolerance and altering, among other things, hormonal regulation. This study investigated hormonal [...] Read more.
Global climate change is causing increasing fluctuations in winter temperatures, including episodes of warm conditions above 9 °C. Such events disrupt cold acclimation in plants and can induce deacclimation, reducing frost tolerance and altering, among other things, hormonal regulation. This study investigated hormonal and molecular changes associated with cold acclimation and deacclimation in oilseed rape (Brassica napus L.) cultivars Kuga and Thure. Plants were grown under different conditions: non-acclimated (17 °C for three weeks), cold-acclimated (4 °C for three weeks), and deacclimated (16/9 °C day/night for one week). Detailed hormone analysis included auxins, gibberellins, cytokinins, stress-related hormones, and the expression of hormone-related genes (BnABF2, BnAOS, BnARF1, BnARR6, BnICS1, BnRGA, and BnWRKY57). Hormone concentrations in leaves changed dynamically in response to deacclimation with increased amounts of growth-promoting hormones and decreased amounts of stress hormones. Additionally, alterations in gene expression during deacclimation, such as in BnABF2 and BnICS1, may function as protective mechanisms to help maintain or regain frost tolerance during reacclimation when temperatures decline again after the warm period. These findings improve the understanding of hormonal and molecular responses involved in the deacclimation of oilseed rape. Full article
(This article belongs to the Special Issue Plant Hormone Signaling)
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22 pages, 2422 KiB  
Article
A Conserved N-Terminal Di-Arginine Motif Stabilizes Plant DGAT1 and Modulates Lipid Droplet Organization
by Somrutai Winichayakul, Hong Xue and Nick Roberts
Int. J. Mol. Sci. 2025, 26(15), 7406; https://doi.org/10.3390/ijms26157406 (registering DOI) - 31 Jul 2025
Abstract
Diacylglycerol-O-acyltransferase 1 (DGAT1, EC 2.3.1.20) is a pivotal enzyme in plant triacylglycerol (TAG) biosynthesis. Previous work identified conserved di-arginine (R) motifs (R-R, R-X-R, and R-X-X-R) in its N-terminal cytoplasmic acyl-CoA binding domain. To elucidate their functional significance, we engineered R-rich sequences in the [...] Read more.
Diacylglycerol-O-acyltransferase 1 (DGAT1, EC 2.3.1.20) is a pivotal enzyme in plant triacylglycerol (TAG) biosynthesis. Previous work identified conserved di-arginine (R) motifs (R-R, R-X-R, and R-X-X-R) in its N-terminal cytoplasmic acyl-CoA binding domain. To elucidate their functional significance, we engineered R-rich sequences in the N-termini of Tropaeolum majus and Zea mays DGAT1s. Comparative analysis with their respective non-mutant constructs showed that deleting or substituting R with glycine in the N-terminal region of DGAT1 markedly reduced lipid accumulation in both Camelina sativa seeds and Saccharomyces cerevisiae cells. Immunofluorescence imaging revealed co-localization of non-mutant and R-substituted DGAT1 with lipid droplets (LDs). However, disruption of an N-terminal di-R motif destabilizes DGAT1, alters LD organization, and impairs recombinant oleosin retention on LDs. Further evidence suggests that the di-R motif mediates DGAT1 retrieval from LDs to the endoplasmic reticulum (ER), implicating its role in dynamic LD–ER protein trafficking. These findings establish the conserved di-R motifs as important regulators of DGAT1 function and LD dynamics, offering insights for the engineering of oil content in diverse biological systems. Full article
(This article belongs to the Special Issue Modern Plant Cell Biotechnology: From Genes to Structure, 2nd Edition)
13 pages, 1294 KiB  
Article
Soil Phosphorus Availability Modulates Host Selectivity of Pedicularis kansuensis Between Legumes and Grasses
by Xiaolin Sui, Ruijuan Xue and Airong Li
Plants 2025, 14(15), 2356; https://doi.org/10.3390/plants14152356 (registering DOI) - 31 Jul 2025
Abstract
Host selectivity or preference plays a critical role in enabling parasitic plants to identify suitable hosts and influence plant community dynamics. Phosphorus (P) is known to affect the growth of root hemiparasitic plants and their interaction with single host species, but its role [...] Read more.
Host selectivity or preference plays a critical role in enabling parasitic plants to identify suitable hosts and influence plant community dynamics. Phosphorus (P) is known to affect the growth of root hemiparasitic plants and their interaction with single host species, but its role in shaping host selectivity across multiple hosts is unclear. In a pot experiment, we used a grass–legume co-culture design and evaluated whether the root hemiparasitic plant Pedicularis kansuensis exhibits selective parasitism on legumes (Medicago sativa) versus grasses (Elymus nutans) and assessed the impact of soil P availability on this preference. The results showed that P. kansuensis inhibited the growth of both host species, but the magnitude of suppression varied with P availability. Under low P conditions, P. kansuensis preferentially parasitized the tender M. sativa, causing a greater biomass reduction in the legume. In contrast, at high P levels, P. kansuensis decreased its foraging on legumes, shifting its parasitism towards the dominant E. nutans, which potentially led to stronger suppression of grass growth. Our findings demonstrate that soil P availability modulates host selectivity in P. kansuensis, emphasizing the influence of soil nutrient conditions on parasite–host dynamics. This research provides insights into managing the impacts of parasitic plants on plant community structure through nutrient interventions. Full article
(This article belongs to the Special Issue Phosphorus and pH Management in Soil–Plant Systems)
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18 pages, 3738 KiB  
Article
Effect of Alternate Sprinkler Irrigation with Saline and Fresh Water on Soil Water–Salt Transport and Corn Growth
by Yue Jiang, Luya Wang, Yanfeng Li, Hao Li and Run Xue
Agronomy 2025, 15(8), 1854; https://doi.org/10.3390/agronomy15081854 - 31 Jul 2025
Abstract
To address freshwater scarcity and the underutilization of low-saline water in the North China Plain, a field study was conducted to evaluate the effects of alternating sprinkler irrigation using saline and fresh water on soil water–salt dynamics and corn growth. Two salinity levels [...] Read more.
To address freshwater scarcity and the underutilization of low-saline water in the North China Plain, a field study was conducted to evaluate the effects of alternating sprinkler irrigation using saline and fresh water on soil water–salt dynamics and corn growth. Two salinity levels (3 and 5 g·L−1, representing S1 and S2, respectively) and three irrigation strategies—saline–fresh–saline–fresh (F1), saline–fresh (F2), and mixed saline–fresh (F3)—were tested, resulting in six treatments: S1F1, S1F2, S1F3, S2F1, S2F2, and S2F3. S1F1 significantly improved soil water retention at a 30–50 cm depth and reduced surface electrical conductivity (EC) and Na+ concentration (p < 0.05). S1F1 also promoted more uniform Mg2+ distribution and limited Ca2+ loss. Under high salinity (5 g·L−1), surface salt accumulation and ion concentration (Na+, Mg2+, and Ca2+) increased, particularly in S2F3. Corn growth under alternating irrigation (F1/F2) outperformed the mixed mode (F3), with S1F1 achieving the highest plant height, leaf area, grain number, and 100-grain weight. The S1F1 yield surpassed others by 0.4–3.0% and maintained a better ion balance. These results suggest that alternating irrigation with low-salinity water (S1F1) effectively regulates root-zone salinity and improves crop productivity, offering a practical strategy for the sustainable use of low-saline water resources. Full article
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30 pages, 4804 KiB  
Article
Deep Storage Irrigation Enhances Grain Yield of Winter Wheat by Improving Plant Growth and Grain-Filling Process in Northwest China
by Xiaodong Fan, Dianyu Chen, Haitao Che, Yakun Wang, Yadan Du and Xiaotao Hu
Agronomy 2025, 15(8), 1852; https://doi.org/10.3390/agronomy15081852 - 31 Jul 2025
Abstract
In the irrigation districts of Northern China, the flood resources utilization for deep storage irrigation, which is essentially characterized by active excessive irrigation, aims to have the potential to mitigate freshwater shortages, and long-term groundwater overexploitation. It is crucial to detect the effects [...] Read more.
In the irrigation districts of Northern China, the flood resources utilization for deep storage irrigation, which is essentially characterized by active excessive irrigation, aims to have the potential to mitigate freshwater shortages, and long-term groundwater overexploitation. It is crucial to detect the effects of irrigation amounts on agricultural yield and the mechanisms under deep storage irrigation. A three-year field experiment (2020–2023) was conducted in the Guanzhong Plain, according to five soil wetting layer depths (RF: 0 cm; W1: control, 120 cm; W2: 140 cm; W3: 160 cm; W4: 180 cm) with soil saturation water content as the irrigation upper limit. Results exhibited that, compared to W1, the W2, W3, and W4 treatments led to the increased plant height, leaf area index, and dry matter accumulation. Meanwhile, the W2, W3, and W4 treatments improved kernel weight increment achieving maximum grain-filling rate (Wmax), maximum grain-filling rate (Gmax), and average grain-filling rate (Gave), thereby enhancing the effective spikes (ES) and grain number per spike (GS), and thus increased wheat grain yield (GY). In relative to W1, the W2, W3, and W4 treatments increased the ES, GS, and GY by 11.89–19.81%, 8.61–14.36%, and 8.17–13.62% across the three years. Notably, no significant difference was observed in GS and GY between W3 and W4 treatments, but W4 treatment displayed significant decreases in ES by 3.04%, 3.06%, and 2.98% in the respective years. The application of a structural equation modeling (SEM) revealed that deep storage irrigation improved ES and GS by positively regulating Wmax, Gmax, and Gave, thus significantly increasing GY. Overall, this study identified the optimal threshold (W3 treatment) to maximize wheat yields by optimizing both the vegetative growth and grain-filling dynamics. This study provides essential support for the feasibility assessment of deep storage irrigation before flood seasons, which is vital for the balance and coordination of food security and water security. Full article
(This article belongs to the Section Water Use and Irrigation)
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13 pages, 6341 KiB  
Article
Interaction of Ethanolamine with Magnetite Through Molecular Dynamic Simulations
by Nikoleta Ivanova, Vasil Karastoyanov, Iva Betova and Martin Bojinov
Molecules 2025, 30(15), 3197; https://doi.org/10.3390/molecules30153197 - 30 Jul 2025
Abstract
Magnetite (Fe3O4) provides a protective corrosion layer in the steam generators of nuclear power plants. The presence of monoethanolamine (MEA) in coolant water has a beneficial effect on corrosion processes. In that context, the adsorption of MEA and ethanol–ammonium [...] Read more.
Magnetite (Fe3O4) provides a protective corrosion layer in the steam generators of nuclear power plants. The presence of monoethanolamine (MEA) in coolant water has a beneficial effect on corrosion processes. In that context, the adsorption of MEA and ethanol–ammonium cation on the {111} surface of magnetite was studied using the molecular dynamics (MD) method. A modified version of the mechanical force field (ClayFF) was used. The systems were simulated at different temperatures (423 K; 453 K; 503 K). Surface coverage data were obtained from adsorption simulations; the root-mean-square deviation (RMSD) of the target molecules were calculated, and their minimum distance to the magnetite surface was traced. The potential and adsorption energies of MEA were calculated as a function of temperature. It has been established that the interaction between MEA and magnetite is due to electrostatic phenomena and the adsorption rate increases with temperature. A comparison was made with existing experimental results and similar MD simulations. Full article
(This article belongs to the Section Computational and Theoretical Chemistry)
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15 pages, 4340 KiB  
Article
Variations in Fine-Root Traits of Pseudotsuga sinensis Across Different Rocky-Desertification Gradients
by Wangjun Li, Shun Zou, Dongpeng Lv, Bin He and Xiaolong Bai
Diversity 2025, 17(8), 533; https://doi.org/10.3390/d17080533 - 29 Jul 2025
Viewed by 90
Abstract
Plant functional traits serve as vital tools for understanding vegetation adaptation mechanisms in changing environments. As the primary organs for nutrient acquisition from soil, fine roots are highly sensitive to environmental variations. However, current research on fine-root adaptation strategies predominantly focuses on tropical, [...] Read more.
Plant functional traits serve as vital tools for understanding vegetation adaptation mechanisms in changing environments. As the primary organs for nutrient acquisition from soil, fine roots are highly sensitive to environmental variations. However, current research on fine-root adaptation strategies predominantly focuses on tropical, subtropical, and temperate forests, leaving a significant gap in comprehensive knowledge regarding fine-root responses in rocky-desertification habitats. This study investigates the fine roots of Pseudotsuga sinensis across varying degrees of rocky desertification (mild, moderate, severe, and extremely severe). By analyzing fine-root morphological and nutrient traits, we aim to elucidate the trait differences and correlations under different desertification intensities. The results indicate that root dry matter content increases significantly with escalating desertification severity. Fine roots in mild and extremely severe desertification exhibit notably higher root C, K, and Mg concentrations compared to those in moderate and severe desertification, while root Ca concentration shows an inverse trend. Our correlation analyses reveal a highly significant positive relationship between specific root length and specific root area, whereas root dry matter content demonstrates a significant negative correlation with elemental concentrations. The principal component analysis (PCA) further indicates that the trait associations adopted by the forest in mild- and extremely severe-desertification environments are different from those in moderate- and severe-desertification environments. This study did not account for soil nutrient dynamics, microbial diversity, or enzymatic activity—key factors influencing fine-root adaptation. Future research should integrate root traits with soil properties to holistically assess resource strategies in rocky-desertification ecosystems. This study can serve as a theoretical reference for research on root characteristics and adaptation strategies of plants in rocky-desertification habitats. Full article
(This article belongs to the Section Plant Diversity)
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16 pages, 3034 KiB  
Article
Interannual Variability in Precipitation Modulates Grazing-Induced Vertical Translocation of Soil Organic Carbon in a Semi-Arid Steppe
by Siyu Liu, Xiaobing Li, Mengyuan Li, Xiang Li, Dongliang Dang, Kai Wang, Huashun Dou and Xin Lyu
Agronomy 2025, 15(8), 1839; https://doi.org/10.3390/agronomy15081839 - 29 Jul 2025
Viewed by 93
Abstract
Grazing affects soil organic carbon (SOC) through plant removal, livestock trampling, and manure deposition. However, the impact of grazing on SOC is also influenced by multiple factors such as climate, soil properties, and management approaches. Despite extensive research, the mechanisms by which grazing [...] Read more.
Grazing affects soil organic carbon (SOC) through plant removal, livestock trampling, and manure deposition. However, the impact of grazing on SOC is also influenced by multiple factors such as climate, soil properties, and management approaches. Despite extensive research, the mechanisms by which grazing intensity influences SOC density in grasslands remain incompletely understood. This study examines the effects of varying grazing intensities on SOC density (0–30 cm) dynamics in temperate grasslands of northern China using field surveys and experimental analyses in a typical steppe ecosystem of Inner Mongolia. Results show that moderate grazing (3.8 sheep units/ha/yr) led to substantial consumption of aboveground plant biomass. Relative to the ungrazed control (0 sheep units/ha/yr), aboveground plant biomass was reduced by 40.5%, 36.2%, and 50.6% in the years 2016, 2019, and 2020, respectively. Compensatory growth failed to fully offset biomass loss, and there were significant reductions in vegetation carbon storage and cover (p < 0.05). Reduced vegetation cover increased bare soil exposure and accelerated topsoil drying and erosion. This degradation promoted the downward migration of SOC from surface layers. Quantitative analysis revealed that moderate grazing significantly reduced surface soil (0–10 cm) organic carbon density by 13.4% compared to the ungrazed control while significantly increasing SOC density in the subsurface layer (10–30 cm). Increased precipitation could mitigate the SOC transfer and enhance overall SOC accumulation. However, it might negatively affect certain labile SOC fractions. Elucidating the mechanisms of SOC variation under different grazing intensities and precipitation regimes in semi-arid grasslands could improve our understanding of carbon dynamics in response to environmental stressors. These insights will aid in predicting how grazing systems influence grassland carbon cycling under global climate change. Full article
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18 pages, 2358 KiB  
Article
Characterizing the Temporally Dynamic Nature of Relative Growth Rates: A Kinetic Analysis on Nitrogen-, Phosphorus-, and Potassium-Limited Growth
by Andrew Sharkey, Asher Altman, Yuming Sun, Thomas K. S. Igou and Yongsheng Chen
Agriculture 2025, 15(15), 1641; https://doi.org/10.3390/agriculture15151641 - 29 Jul 2025
Viewed by 144
Abstract
Developing precision models to describe agricultural growth is a necessary step to promote sustainable agriculture and increase resource circulation. In this study, the researchers hydroponically cultivated Bibb lettuce (Lactuca sativa) across a variety of nitrogen, phosphorus, and potassium (NPK)-limited treatments and [...] Read more.
Developing precision models to describe agricultural growth is a necessary step to promote sustainable agriculture and increase resource circulation. In this study, the researchers hydroponically cultivated Bibb lettuce (Lactuca sativa) across a variety of nitrogen, phosphorus, and potassium (NPK)-limited treatments and developed robust data-driven kinetic models observing nutrient uptake, biomass growth, and tissue composition based on all three primary macronutrients. The resulting Dynamic μ model is the first to integrate plant maturity’s impact on growth rate, significantly improving model accuracy across limiting nutrients, treatments, and developmental stages. This reduced error supports this simple expansion as a practical and necessary inclusion for agricultural kinetic modeling. Furthermore, analysis of nutrient uptake refines the ideal hydroponic nutrient balance for Bibb lettuce to 132, 35, and 174 mg L−1 (N, P, and K, respectively), while qualitative cell yield analysis identifies minimum nutrient thresholds at approximately 26.2–41.7 mg-N L−1, 3.7–5.6 mg-P L−1, and 17.4–31.5 mg-K L−1 to produce compositionally healthy lettuce. These findings evaluate reclaimed wastewater’s ability to offset the fertilizer burden for lettuce by 23–45%, 14–57%, and 3–23% for N, P, and K and guide the required minimum amount of wastewater pre-processing or nutrient supplements needed to completely fulfill hydroponic nutrient demands. Full article
(This article belongs to the Section Agricultural Systems and Management)
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27 pages, 5548 KiB  
Article
Woody Vegetation Characteristics of Selected Rangelands Along an Aridity Gradient in Namibia: Implications for Rangeland Management
by Emilia N. Inman, Igshaan Samuels, Zivanai Tsvuura, Margaret Angula and Jesaya Nakanyala
Diversity 2025, 17(8), 530; https://doi.org/10.3390/d17080530 - 29 Jul 2025
Viewed by 181
Abstract
Rangelands form the ecological and economic backbone of Namibia, yet the woody plant dynamics that sustain these landscapes remain sporadically quantified across the semi-arid interior. We investigated the characteristics (stand structure, regeneration, richness, diversity, composition, ecological importance, and indicator species) of woody communities [...] Read more.
Rangelands form the ecological and economic backbone of Namibia, yet the woody plant dynamics that sustain these landscapes remain sporadically quantified across the semi-arid interior. We investigated the characteristics (stand structure, regeneration, richness, diversity, composition, ecological importance, and indicator species) of woody communities along a pronounced south-to-north rainfall gradient (85–346 mm yr−1) at five representative sites: Warmbad, Gibeon, Otjimbingwe, Ovitoto, and Sesfontein. Field sampling combined point-centered quarter surveys (10 points site−1) and belt transects (15 plots site−1). The basal area increased almost ten-fold along the gradient (0.4–3.4 m2 ha−1). Principal Coordinates Analysis (PCoA) arranged plots in near-perfect rainfall order, and Permutational Multivariate Analysis of Variance (PERMANOVA) confirmed significant site differences (F3,56 = 9.1, p < 0.001). Nanophanerophytes dominated hyper-arid zones, while microphanerophytes appeared progressively with increasing rainfall. Mean annual precipitation explained 45% of the variance in mean height and 34% of Shannon diversity but only 5% of stem density. Indicator value analysis highlighted Montinia caryophyllacea for Warmbad (IndVal = 100), Rhigozum trichotomum (75.8) for Gibeon, Senegalia senegal (72.6) for Otjimbingwe, and Senegalia mellifera (97.3) for Ovitoto. Rainfall significantly influences woody structure and diversity; however, other factors also modulate density and regeneration dynamics. This quantitative baseline can serve as a practical toolkit for designing site-specific management strategies across Namibia’s aridity gradient. Full article
(This article belongs to the Section Plant Diversity)
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29 pages, 3259 KiB  
Review
The Role of the Environment (Water, Air, Soil) in the Emergence and Dissemination of Antimicrobial Resistance: A One Health Perspective
by Asma Sassi, Nosiba S. Basher, Hassina Kirat, Sameh Meradji, Nasir Adam Ibrahim, Takfarinas Idres and Abdelaziz Touati
Antibiotics 2025, 14(8), 764; https://doi.org/10.3390/antibiotics14080764 - 29 Jul 2025
Viewed by 247
Abstract
Antimicrobial resistance (AMR) has emerged as a planetary health emergency, driven not only by the clinical misuse of antibiotics but also by diverse environmental dissemination pathways. This review critically examines the role of environmental compartments—water, soil, and air—as dynamic reservoirs and transmission routes [...] Read more.
Antimicrobial resistance (AMR) has emerged as a planetary health emergency, driven not only by the clinical misuse of antibiotics but also by diverse environmental dissemination pathways. This review critically examines the role of environmental compartments—water, soil, and air—as dynamic reservoirs and transmission routes for antibiotic-resistant bacteria (ARB) and resistance genes (ARGs). Recent metagenomic, epidemiological, and mechanistic evidence demonstrates that anthropogenic pressures—including pharmaceutical effluents, agricultural runoff, untreated sewage, and airborne emissions—amplify resistance evolution and interspecies gene transfer via horizontal gene transfer mechanisms, biofilms, and mobile genetic elements. Importantly, it is not only highly polluted rivers such as the Ganges that contribute to the spread of AMR; even low concentrations of antibiotics and their metabolites, formed during or after treatment, can significantly promote the selection and dissemination of resistance. Environmental hotspots such as European agricultural soils and airborne particulate zones near wastewater treatment plants further illustrate the complexity and global scope of pollution-driven AMR. The synergistic roles of co-selective agents, including heavy metals, disinfectants, and microplastics, are highlighted for their impact in exacerbating resistance gene propagation across ecological and geographical boundaries. The efficacy and limitations of current mitigation strategies, including advanced wastewater treatments, thermophilic composting, biosensor-based surveillance, and emerging regulatory frameworks, are evaluated. By integrating a One Health perspective, this review underscores the imperative of including environmental considerations in global AMR containment policies and proposes a multidisciplinary roadmap to mitigate resistance spread across interconnected human, animal, and environmental domains. Full article
(This article belongs to the Special Issue The Spread of Antibiotic Resistance in Natural Environments)
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19 pages, 5927 KiB  
Article
Modeling the Anti-Adhesive Role of Punicalagin Against Listeria Monocytogenes from the Analysis of the Interaction Between Internalin A and E-Cadherin
by Lorenzo Pedroni, Sergio Ghidini, Javier Vázquez, Francisco Javier Luque and Luca Dellafiora
Int. J. Mol. Sci. 2025, 26(15), 7327; https://doi.org/10.3390/ijms26157327 - 29 Jul 2025
Viewed by 206
Abstract
Listeria monocytogenes poses health threats due to its resilience and potential to cause severe infections, especially in vulnerable populations. Plant extracts and/or phytocomplexes have demonstrated the capability of natural compounds in mitigating L. monocytogenes virulence. Here we explored the suitability of a computational [...] Read more.
Listeria monocytogenes poses health threats due to its resilience and potential to cause severe infections, especially in vulnerable populations. Plant extracts and/or phytocomplexes have demonstrated the capability of natural compounds in mitigating L. monocytogenes virulence. Here we explored the suitability of a computational pipeline envisioned to identify the molecular determinants for the recognition between the bacterial protein internalin A (InlA) and the human E-cadherin (Ecad), which is the first step leading to internalization. This pipeline consists of molecular docking and extended atomistic molecular dynamics simulations to identify key interaction clusters between InlA and Ecad. It exploits this information in the screening of chemical libraries of natural compounds that might competitively interact with InIA and hence impede the formation of the InIA–Ecad complex. This strategy was effective in providing a molecular model for the anti-adhesive activity of punicalagin and disclosed two natural phenolic compounds with a similar interaction pattern. Besides elucidating key aspects of the mutual recognition between InIA and Ecad, this study provides a molecular basis about the mechanistic underpinnings of the anti-adhesive action of punicalagin that enable application against L. monocytogenes. Full article
(This article belongs to the Special Issue Computational Approaches for Protein Design)
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20 pages, 3123 KiB  
Article
Plant Electrophysiological Parameters Represent Leaf Intracellular Water–Nutrient Metabolism and Immunoregulations in Brassica rapa During Plasmodiophora Infection
by Antong Xia, Yanyou Wu, Kun Zhai, Dongshan Xiang, Lin Li, Zhanghui Qin and Gratien Twagirayezu
Plants 2025, 14(15), 2337; https://doi.org/10.3390/plants14152337 - 29 Jul 2025
Viewed by 172
Abstract
Although Brassica rapa (B. rapa) is vital in agricultural production and vulnerable to the pathogen Plasmodiophora, the intracellular water–nutrient metabolism and immunoregulation of Plasmodiophora infection in B. rapa leaves remain unclear. This study aimed to analyze the responsive mechanisms of [...] Read more.
Although Brassica rapa (B. rapa) is vital in agricultural production and vulnerable to the pathogen Plasmodiophora, the intracellular water–nutrient metabolism and immunoregulation of Plasmodiophora infection in B. rapa leaves remain unclear. This study aimed to analyze the responsive mechanisms of Plasmodiophora-infected B. rapa using rapid detection technology. Six soil groups planted with Yangtze No. 5 B. rapa were inoculated with varying Plasmodiophora concentrations (from 0 to 10 × 109 spores/mL). The results showed that at the highest infection concentration (PWB5, 10 × 109 spores/mL) of B. rapa leaves, the plant electrophysiological parameters showed the intracellular water-holding capacity (IWHC), the intracellular water use efficiency (IWUE), and the intracellular water translocation rate (IWTR) declined by 41.99–68.86%. The unit for translocation of nutrients (UNF) increased by 52.83%, whereas the nutrient translocation rate (NTR), the nutrient translocation capacity (NTC), the nutrient active translocation (NAT) value, and the nutrient active translocation capacity (NAC) decreased by 52.40–77.68%. The cellular energy metabolism decreased with worsening Plasmodiophora infection, in which the units for cellular energy metabolism (∆GE) and cellular energy metabolism (∆G) of the leaves decreased by 44.21% and 78.14% in PWB5, respectively. Typically, based on distribution of B-type dielectric substance transfer percentage (BPn), we found PWB4 (8 × 109 spores/mL) was the maximal immune response concentration, as evidenced by a maximal BPnR (B-type dielectric substance transfer percentage based on resistance), with increasing lignin and cork deposition to enhance immunity, and a minimum BPnXc (B-type dielectric substance transfer percentage based on capacitive reactance), with a decreasing quantity of surface proteins in the B. rapa leaves. This study suggests plant electrophysiological parameters could characterize intracellular water–nutrient metabolism and immunoregulation of B. rapa leaves under various Plasmodiophora infection concentrations, offering a dynamic detection method for agricultural disease management. Full article
(This article belongs to the Section Plant Physiology and Metabolism)
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