Search Results (422)

Arbuscular mycorrhizal fungi (AMF) play a vital role in the restoration of tropical forests by enhancing soil fertility, facilitating plant establishment, and improving ecosystem resilience. This study presents a comprehensive bibliometric analysis of global scientific output on AMF in the context of ecological restoration, based on 3835 publications indexed in the Web of Science and Scopus databases from 2001 to 2024. An average annual growth rate of approximately 9.45% was observed, with contributions from 10,868 authors across 880 journals. The most prominent journals included Mycorrhiza (3.34%), New Phytologist (3.00%), and Applied Soil Ecology (2.79%). Thematically, dominant research areas encompassed soil–plant interactions, phytoremediation, biodiversity, and microbial ecology. Keyword co-occurrence analysis identified “arbuscular mycorrhizal fungi,” “diversity,” “soil,” and “plant growth” as core topics, while emerging topics such as rhizosphere interactions and responses to abiotic stress showed increasing prominence. Despite the expanding body of literature, key knowledge gaps remain, particularly concerning AMF–plant specificity, long-term restoration outcomes, and integration of microbial community dynamics. These findings offer critical insights into the development of AMF research and underscore its strategic importance in tropical forest restoration, providing a foundation for future studies and informing ecosystem management policies. Full article

Coastal ecosystems are increasingly threatened by climate change and anthropogenic pressures, which can disrupt microbial communities and favor the emergence of pathogenic organisms. In this study, we applied metagenomic analysis to characterize fungal communities in sediment samples from an urban mangrove subjected to environmental stress. The results revealed a fungal community with reduced richness—28% lower than expected for similar ecosystems—likely linked to physicochemical changes such as heavy metal accumulation, acidic pH, and eutrophication, all typical of urbanized coastal areas. Notably, we detected an increase in potentially pathogenic genera, including Candida, Aspergillus, and Pseudoascochyta, alongside a decrease in key saprotrophic genera such as Fusarium and Thelebolus, indicating a shift in ecological function. The fungal assemblage was dominated by the phyla Ascomycota and Basidiomycota, and despite adverse conditions, symbiotic mycorrhizal fungi remained present, suggesting partial resilience. A considerable fraction of unclassified fungal taxa also points to underexplored microbial diversity with potential ecological or health significance. Importantly, this study does not aim to compare pristine and contaminated environments, but rather to provide a sanitary alert by identifying the presence and potential proliferation of pathogenic fungi in a degraded mangrove system. These findings highlight the sensitivity of mangrove fungal communities to environmental disturbance and reinforce the value of metagenomic approaches for monitoring ecosystem health. Incorporating fungal metagenomic surveillance into environmental management strategies is essential to better understand biodiversity loss, ecological resilience, and potential public health risks in degraded coastal environments. Full article

Fungal communities in high plateau ecosystems remain understudied despite their crucial roles in soil ecosystems, and yeasts inhabiting extreme regions have potential for industrial and biotechnological applications. We studied the fungal diversity in soils across 14 Chilean Altiplano sites using amplicon-based metagenomics and isolation of yeasts to assess their growth under various conditions and hydrolytic enzyme secretion. Using the metagenomic approach, the Ascomycota and Basidiomycota phyla were found to be the most abundant (85% and 8%, respectively). Unclassified families and genera prevailed at six and ten sites, respectively. At the other sites, the most abundant families included Cladosporiaceae, Teratosphaeriaceae, and Sporormiaceae, and the genera Oleoguttula, Coniochaeta, and Peziza. Biodiversity indices did not correlate with the soil’s geographic origin, organic matter content, humidity, or pH. Most isolated yeasts belong to the Naganishia, Holtermanniella, and Vishniacozyma genera, growing at temperatures ranging from 4 °C to 26 °C. Most isolates could use glucose, sucrose, and maltose as carbon sources and exhibited amylase, esterase, pectinase, and protease activities at 30 °C and below. Our results indicate that the evaluated soil physicochemical parameters do not explain the fungal distribution in the Altiplano and highlight the region as a reservoir of unknown fungi, including yeasts with industrially relevant enzymes. Full article

Background/Objectives: The emergence of antimicrobial resistance represents a critical global health threat, requiring the discovery of novel bioactive compounds. Fungi from Amazonian biodiversity are promising sources of secondary metabolites with potential antimicrobial activity. This study aimed to investigate the production of antimicrobial compounds by two Amazonian fungal strains using the OSMAC (One Strain–Many Compounds) approach. Methods: Two fungal strains, Talaromyces pinophilus CCM-UEA-F0414 and Penicillium paxilli CCM-UEA-F0591, were cultivated under five distinct culture media to modulate secondary metabolite production. Ethyl acetate extracts were prepared and evaluated for antimicrobial activity against Gram-positive and Gram-negative bacteria, as well as pathogenic yeasts. Chemical characterization was performed using thin-layer chromatography (TLC), Fourier Transform Infrared Spectroscopy (FTIR), Ultraviolet–Visible (UV-Vis) spectroscopy, and Ultra-High-Performance Liquid Chromatography with Diode Array Detection (uHPLC-DAD). Results: The extracts exhibited significant antimicrobial activity, with minimum inhibitory concentrations (MICs) ranging from 78 to 5000 µg/mL. Chemical analyses revealed the presence of phenolic compounds, particularly caffeic and chlorogenic acids. Variations in the culture media substantially affected both the metabolite profiles and antimicrobial efficacy of the extracts. Conclusions: The OSMAC strategy effectively enhanced the metabolic diversity of the Amazonian fungal strains, leading to the production of bioactive metabolites with antimicrobial potential. These findings support the importance of optimizing culture conditions to unlock the biosynthetic capacity of Amazonian fungi as promising sources of antimicrobial agents. Full article

Organic farming is widely recognized as a promising practice for sustainable agriculture, yet its long-term ecological impacts remain insufficiently investigated. In this study, we evaluated these impacts by comparing heavy metal concentrations, soil invertebrate communities, and microbial profiles between long-term organic and conventional farming systems. A comparative analysis was conducted on 24 plot soils from two paired organic and conventional farm systems in Beijing, each managed continuously for over 20 years. Our results revealed that soils under organic management consistently contained 10.8% to 73.7% lower heavy metals, along with reduced geo-accumulation indices (I_geo, a standardized metric for soil contamination assessment), indicating decreased contamination risks. In terms of soil fauna, while conventional soils showed higher Collembola abundance, organic farming significantly enhanced Collembola richness and diversity by 20.6% to 55.0%. Microbial sequencing likewise revealed enhanced richness and diversity of bacteria and fungi in organic soils. These microbial communities also displayed shifts in dominant taxa and more stable co-occurrence networks under organic management. Principal component analysis and Mantel tests identified soil pH and nutrients as key drivers of soil biodiversity, while heavy metals also imposed negative influences. Collectively, these findings demonstrate that long-term organic farming not only mitigates environmental risks associated with soil contaminants but also promotes belowground ecological integrity by supporting biodiversity of soil fauna and microbiota. This study highlights the ecological significance of sustained organic practices and provides critical insights for advancing sustainable agricultural developments. Full article

Integrated rice–crayfish (Oryza sativa–Procambarus clarkii) co-culture (RC) systems have gained prominence due to their economic benefits and ecological sustainability; however, the interactions between soil properties and microbial communities in such systems remain poorly understood. This study evaluated the effects of the RC systems on soil physicochemical characteristics and microbial dynamics in paddy fields of southern Henan Province, China, over the 2023 growing season and subsequent fallow period. Using a randomized complete design, rice monoculture (RM, as the control) and RC treatments were compared across replicated plots. Soil and water samples were collected post-harvest and pre-transplanting to assess soil properties, extracellular enzyme activity, and microbial community structure. Results showed that RC significantly enhanced soil moisture by up to 30.2%, increased soil porosity by 9.6%, and nearly tripled soil organic carbon compared to RM. The RC system consistently elevated nitrogen (N), phosphorus (P), and potassium (K) throughout both the rice growth and fallow stages, indicating improved nutrient availability and retention. Elevated extracellular enzyme activities linked to carbon, N, and P cycling were observed under RC, with enzymatic stoichiometry revealing increased microbial nutrient limitation intensity and a shift toward P limitation. Microbial community composition was significantly altered under RC, showing increased biomass, a higher fungi-to-bacteria ratio, and greater relative abundance of Gram-positive bacteria, reflecting enhanced soil biodiversity and ecosystem resilience. Further analyses using the Mantel test and Random Forest identified extracellular enzyme activities, PLFAs, soil moisture, and bulk density as major factors shaping microbial communities. Redundancy analysis (RDA) confirmed that total potassium (TK), vector length (VL), soil pH, and total nitrogen (TN) were the strongest environmental predictors of microbial variation, jointly explaining 74.57% of the total variation. Our findings indicated that RC improves soil physicochemical conditions and microbial function, thereby supporting sustainable nutrient cycling and offering a promising, environmentally sound strategy for enhancing productivity and soil health in rice-based agro-ecosystems. Full article

Fusarioid fungi, members of the Nectriaceae within the Hypocreales (Ascomycota), exhibit diverse ecological roles and possess complex phylogenetic relationships, including endophytic, saprophytic, and pathogenic lifestyles. Among them, the genera Fusarium and Neocosmospora are particularly significant in agriculture and medicine. However, the boundaries between their species remain taxonomically contentious. In this study, 22 representative isolates from plant, fungal, and insect hosts were subjected to a polyphasic taxonomic approach that integrated morphological characterization, multilocus phylogenetic analyses, and phylogenomic analysis based on 4,941 single-copy orthologous genes. Consequently, five new species (F. dracaenophilum, F. puerense, F. wenshanense, N. alboflava, and N. fungicola) were described, and F. qiannanense and N. solani were recorded from new host species. The resulting phylogenomic tree topology was highly congruent with the multilocus phylogeny, providing robust support for the taxonomic distinction between Fusarium and Neocosmospora. This study provides new insights into the taxonomy of fusarioid fungi and has important implications for plant disease management, biodiversity conservation, and the study of fungal evolution. Full article

The formation and development of mushrooms depend on suitable conditions of humidity, substrate, and temperature. These environmental factors are directly influenced by ongoing climate change, which may alter fungal growth patterns, distribution, and morphology. However, these attributes remain inadequately investigated in Antarctic mushrooms. In this study, we examined 334 basidiomes of Arrhenia antarctica, discovered on Livingston Island in 2023. The morphological characteristics of these basidiomes were analyzed to explore how recent variations may be linked to and explained by climatic changes. Comparing the original description from over 60 years ago with the recent literature on the subject, we observed a larger pileus diameter (47.3% of basidiomes with diameters exceeding 23 mm, up to 75 mm) than previously documented (reported as up to 23 mm). Additionally, there were changes in pileus morphology, with not all of them exhibiting an umbilicate form, contrary to the references. We propose that these morphological variations may be attributed to climatic changes. The basidiomata were also found in association with pure Antarctic grass banks, prompting the question of whether Arrhenia antarctica is indeed a moss parasite. The information presented in this study aims to support ongoing research on the taxonomy and diversity of Agaricales fungi in Antarctica. Full article

Ochrolechia is a diverse and charismatic lineage of both sexually and asexually reproducing lichens, with centers of species richness in northern temperate areas of the world, including North America. As part of recent work to comprehensively inventory the lichens of the Indian Peaks Wilderness (Arapaho–Roosevelt National Forest, Front Range Mountains, Colorado), we discovered material of a sorediate member of the genus to which no existing names could be applied. This material was collected in very remote, extremely difficult-to-access mid-montane forests of the west slope of the Indian Peaks Wilderness, in a steep and jagged off-trail drainage (Hell Canyon). Subsequent study of this material along with review of pre-existing collections at the COLO Herbarium revealed it to represent a new scientific species. We here formally describe Ochrolechia raynori, in honor of Seth Raynor who led the Indian Peaks Wilderness lichen inventory. We additionally document the occurrence of Dactylospora parasitica on this new lichen species. Ochrolechia raynori is distinctive for its continuous, smooth, shiny thallus that bears discrete soralia and coarse soredia, its occurrence on mosses and other lichens that overgrow rocks, and its chemistry. We generated a molecular phylogeny of this and other members of Ochrolechia using the nrITS locus and show O. raynori to be sister to the widespread, sexually reproducing species O. upsaliensis. This occurrence of an asexual species that is sister to a sexual species is consistent with the “species pair” hypothesis in lichenology, which suggests an intimate role of reproductive mode divergence in the process of speciation. Examination of the phylogeny yielded evidence of four additional pairs in Ochrolechia, for a total of five species pairs, which indicates that this phenomenon may be a common occurrence in this lineage. IUCN Conservation Assessment of Ochrolechia raynori revealed the species to be best considered as Critically Endangered. However, we expect that continued efforts to inventory the lichens of the southern Rocky Mountains, especially in some of its wildest, most remote regions in similar habitats, will likely result in the discovery of additional populations of this remarkable new species. Full article

Gastrodia elata, known as Tianma in Chinese, is a valuable medicinal and nutritional resource. The favorable climate of Zhaotong City, Yunnan Province, China, facilitates its growth and nurtures rich biocultural diversity associated with Tianma in the region. Local people not only cultivate Tianma as a traditional crop but have also developed a series of traditional knowledge related to its cultivation, processing, medicinal use, and culinary applications. In this study, field surveys employing ethnobotanical methods were conducted in Yiliang County, Zhaotong City, from August 2020 to May 2024, focusing on Tianma. A total of 114 key informants participated in semi-structured interviews. The survey documented 23 species (and forms) from seven families related to Tianma cultivation. Among them, there were five Gastrodia resource taxa, including one original species, and four forms. These 23 species served as either target cultivated species, symbiotic fungi (promoting early-stage Gastrodia germination), or fungus-cultivating wood. The Fagaceae family, with 10 species, was the most dominant, as its dense, starch-rich wood decomposes slowly, providing Armillaria with a long-term, stable nutrient substrate. The cultural importance (CI) statistics revealed that Castanea mollissima, G. elata, G. elata f. flavida, G. elata f. glauca, G. elata f. viridis, and Xuehong Tianma (unknown form) exhibited relatively high CI values, indicating their crucial cultural significance and substantial value within the local community. In local communities, traditionally processed dried Tianma tubers are mainly used to treat cardiovascular diseases and also serve as a culinary ingredient, with its young shoots and tubers incorporated into dishes such as cold salads and stewed chicken. To protect the essential ecological conditions for Tianma, the local government has implemented forest conservation measures. The sustainable development of the Tianma industry has alleviated poverty, protected biodiversity, and promoted local economic growth. As a distinctive plateau specialty of Zhaotong, Tianma exemplifies how biocultural diversity contributes to ecosystem services and human well-being. This study underscores the importance of biocultural diversity in ecological conservation and the promotion of human welfare. Full article

Organic agriculture is widely regarded as an important approach to reducing biodiversity loss and promoting sustainable agricultural development compared to conventional agriculture. Notably, organic farming practices have substantially boosted the diversity of soil microbial communities. However, empirical studies on the functional structure of soil microbial communities in organic agroecosystems and the mechanisms influencing them remain relatively scarce. Using high-throughput sequencing technology, we analyzed soil microbial communities associated with organic (orange lands) and conventional (coffee and maize lands) farming practices in the Gaoligong Mountains (GLGM) region, with the aim of revealing differences in soil properties, microbial community structure, and functional composition across different agricultural management practices. The results revealed that organic farming boosted soil organic carbon and fertility, driving changes in the microbial community composition. Organic farming notably increased the abundance of bacterial functional groups involved in the carbon and nitrogen cycles but decreased the abundance of symbiotic fungi. Furthermore, no significant differences were observed in the abundance of saprotrophic and pathogenic fungi between the organic and conventional farming systems. The present study demonstrates that organic farming enhances the functional roles of oil microorganisms in nutrient cycling and overall ecosystem processes by enhancing soil’s organic carbon content and soil fertility, thereby modifying the soil’s microbial community structure and functions. Overall, organic farming contributes to improvements in soil health and supports the sustainable development of agriculture in the GLGM region. Full article

Utilizing environmentally friendly techniques for pathogen control in agriculture is a sustainable and eco-friendly approach to managing crop diseases. These techniques leverage the natural environment and ecosystem dynamics to reduce pathogen pressure, minimize the use of chemical inputs, and promote long-term agricultural productivity. Key strategies include crop rotation, intercropping, and maintaining biodiversity, all of which disrupt pathogen life cycles and enhance soil health. Biological control, such as introducing natural antagonists like beneficial fungi or bacteria, suppresses pathogen populations while promoting plant resilience. Additionally, practices such as mulching, soil solarization, and water management optimize environmental conditions to limit the development and spread of pathogens. These techniques also contribute to integrated pest management by providing sustainable, cost-effective solutions that reduce chemical dependency and mitigate climate change and other environmental impacts. This review discusses the importance of utilizing environmentally friendly techniques, highlighting their advantages, practical challenges, and limitations in different agro-ecological settings, and their role in advancing sustainable agriculture. Full article

Fungal biodiversity and ethnomycological knowledge are fundamental components of the biocultural identity of communities within the La Malinche National Park (PNM), a region of ecological and cultural significance in Mexico. This study documented the diversity of wild fungi and their uses in San Miguel Canoa, Puebla, through field excursions with local mushroom gatherers, interviews, and qualitative analysis. Key species such as Russula delica, Boletus aff. edulis, and Amanita basii were identified, playing a vital role in local gastronomy with traditional recipes like mole and pipián. Intergenerational knowledge transmission, crucial for identifying edible fungi and avoiding intoxications, highlights the importance of oral tradition. However, deforestation, illegal logging, and land-use change threaten fungal diversity, a problem exacerbated by the lack of effective conservation policies. The discussion highlights the interplay between biodiversity and culture, emphasizing the significance of the Wild Mushroom Fair organized by the Yolaltepetl collective as an effort to disseminate ethnomycological knowledge and promote the conservation of the PNM. Such community-driven initiatives represent a sustainable model that integrates environmental protection with cultural strengthening. The study concludes that protecting the PNM requires a holistic approach, merging ecological conservation with the recognition of biocultural knowledge. This is essential to preserve both biodiversity and cultural heritage, ensuring their sustainability for future generations. Full article

Saline-alkali soil has poor fertility and low organic matter content, which are key factors that limit agricultural productivity. Intercropping systems can enhance biodiversity in farmlands, thereby increasing the organic matter content. During this process, soil microorganisms respond to environmental changes. Therefore, we conducted a three-year intercropping enhancement experiment using saline-alkali soil. To avoid nutrient and microbial differences caused by the varying nutrient demands of different crop types, we systematically sampled the tillage layer of the soil (0–20 cm) from the subsequent crop (wheat season) in the intercropping systems. We found that compared to the control group, the three intercropping systems significantly increased the nutrient content in saline-alkali soil, including total nitrogen, total phosphorus, total potassium, organic matter, available nitrogen, and available potassium. Notably, there were significant increases in total nitrogen, organic matter, and available potassium. The intercropping systems had varying effects on the alpha and beta diversities of soil bacteria and fungi. Specifically, the effect of intercropping on fungal alpha diversity was significantly greater than that on bacterial alpha diversity, whereas its effect on bacterial beta diversity was greater than that on fungal beta diversity. Additionally, intercropping influenced microbial community composition, increasing the abundance of Acidobacteria and Gemmatimonadetes and decreasing the abundance of Actinobacteria. It also increased the abundance of Ascomycota and Mortierella and decreased the abundance of Basidiomycota. Total nitrogen and soil organic matter were identified as the primary environmental factors that significantly affected bacterial community composition; however, they had no significant impact on fungal communities. Intercropping had different effects on the fungal and bacterial networks. It increased the stability and complexity of the bacterial network. However, although it improved the stability of the fungal network, intercropping reduced its complexity. In summary, intercropping with leguminous plants is an effective way to enhance soil nutrients, particularly organic matter, in saline-alkali soils. Simultaneously, intercropping affects the soil microbial community structure of subsequent crops; however, the responses of bacteria and fungi to intercropping are significantly different. The results of this study provide data support for improving saline-alkali land through planting systems. Full article

Mangrove-associated fungi represent a diverse but understudied group of eukaryotic organisms, especially in the Neotropics. The Colombian Pacific region, with approximately 1300 km of coastline covered with 194,880 ha of mangrove forests that remain largely unexplored for macrofungal diversity, is recognized as a global biodiversity hotspot. This study aimed to catalog the macrofungi associated with mangrove ecosystems in Colombia, integrating morphological characterization and molecular phylogenetics, focusing on three Valle del Cauca Pacific coast localities. A total of 81 specimens were collected from both living trees and decaying wood. Detailed macroscopic and microscopic analyses were conducted, and DNA sequences from two ribosomal DNA barcode regions (ITS and LSU) were generated for 43 specimens. Three new species—Neohypochnicium manglarense, Phlebiopsis colombiana, and Porogramme bononiae—were documented. In addition, eight species were reported as new records for both Colombia and mangrove ecosystems, including Microporus affinis, Paramarasmius palmivorus, Phlebiopsis flavidoalba, Porogramme brasiliensis, Resinicium grandisporum, Trametes ellipsospora, T. menziesii, and T. polyzona. Although previously recorded in Colombian terrestrial ecosystems, Lentinus scleropus and Oudemansiella platensis are globally reported here for the first time from mangrove habitats. Furthermore, Fomitopsis nivosella and Punctularia strigosozonata were documented for the first time in Colombia. This study addresses the first exploration of mangrove-associated macrofungi in the country and provides new insights into the hidden fungal diversity and potential of mangrove ecosystems as a latent niche for basidiomycete dispersal along Colombia’s Pacific coast. Full article