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Keywords = Fei Cui

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25 pages, 16756 KiB  
Article
Research on the Influence of Hydrofoil Propulsive Parameters on Propulsion Efficiency
by Meng Cui, Zhihao Liu, Fei Lu, Jiaye Gong and Zheng Fu
J. Mar. Sci. Eng. 2025, 13(8), 1431; https://doi.org/10.3390/jmse13081431 - 27 Jul 2025
Viewed by 149
Abstract
Oscillating hydrofoils can be used to simplify the study of the swinging caudal fin propulsive mode of fish, where the motion parameters have a direct impact on the hydrodynamic performance and propulsive efficiency. In this study, numerical calculations were carried out on two-dimensional [...] Read more.
Oscillating hydrofoils can be used to simplify the study of the swinging caudal fin propulsive mode of fish, where the motion parameters have a direct impact on the hydrodynamic performance and propulsive efficiency. In this study, numerical calculations were carried out on two-dimensional hydrofoils for sinusoidal and non-sinusoidal heave oscillation, and the numerical results of sinusoidal hydrofoils were compared with the experimental values, which were in good agreement. An analysis of how different motion parameters of the sinusoidal hydrofoil affect the hydrodynamic performance was conducted, and the recommended operating condition range was given in combination with the flow field analysis. A unique non-sinusoidal curve was defined, which can enable the motion to enter the crest and trough earlier or later. The parameters for controlling the degree of non-sinusoidal were also defined. A detailed discussion was carried out on how the non-sinusoidal parameters affect the hydrodynamic performance and the change in the flow field. The corresponding recommended working conditions and application scope were given. Further studies can reveal the propulsive mechanism of the swinging caudal fin and provide a reference for the engineering and design of the next generation of bionic fish. Full article
(This article belongs to the Section Ocean Engineering)
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22 pages, 5198 KiB  
Article
Histone Acetyltransferase MOF-Mediated AURKB K215 Acetylation Drives Breast Cancer Cell Proliferation via c-MYC Stabilization
by Yujuan Miao, Na Zhang, Fuqing Li, Fei Wang, Yuyang Chen, Fuqiang Li, Xueli Cui, Qingzhi Zhao, Yong Cai and Jingji Jin
Cells 2025, 14(14), 1100; https://doi.org/10.3390/cells14141100 - 17 Jul 2025
Viewed by 496
Abstract
Aurora kinase B (AURKB), a serine/threonine protein kinase, is essential for accurate chromosome segregation and cytokinesis during mitosis. Dysregulation of AURKB, often characterized by its overexpression, has been implicated in various malignancies, including breast cancer. However, the mechanisms governing its dysregulation remain incompletely [...] Read more.
Aurora kinase B (AURKB), a serine/threonine protein kinase, is essential for accurate chromosome segregation and cytokinesis during mitosis. Dysregulation of AURKB, often characterized by its overexpression, has been implicated in various malignancies, including breast cancer. However, the mechanisms governing its dysregulation remain incompletely understood. Here, we identify a pivotal role for the MOF/MSL complex—which includes the histone acetyltransferase MOF (KAT8)—in modulating AURKB stability through acetylation at lysine 215 (K215). This post-translational modification inhibits AURKB ubiquitination, thereby stabilizing its protein levels. MOF/MSL-mediated AURKB stabilization promotes the proper assembly of the chromosomal passenger complex (CPC), ensuring mitotic fidelity. Notably, inhibition of MOF reduces AURKB K215 acetylation, leading to decreased AURKB expression and activity. Consequently, this downregulation suppresses expression of the downstream oncogene c-MYC, ultimately attenuating the malignant proliferation of breast cancer cells. Collectively, our findings reveal a novel mechanism by which lysine acetylation regulates AURKB stability, highlight the significance of the MOF-AURKB-c-MYC axis in breast cancer progression, and suggest potential therapeutic strategies targeting this pathway in clinical settings. Full article
(This article belongs to the Collection Feature Papers in 'Cell Proliferation and Division')
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26 pages, 38900 KiB  
Article
A Set of Fluorescent Protein-Based Markers for Major Vesicle Coat Proteins in Yeast
by Xue-Fei Cui, Zheng-Tan Zhang, Jing Zhu, Li Cui and Zhiping Xie
Membranes 2025, 15(7), 209; https://doi.org/10.3390/membranes15070209 - 13 Jul 2025
Viewed by 429
Abstract
In eukaryotic cells, vesicle-mediated transport interconnects the endomembrane system. These vesicles are formed by coat proteins via deformation of donor membranes. Here, we constructed a set of fluorescent protein-based markers for major coat protein complexes in the yeast model system, and examined their [...] Read more.
In eukaryotic cells, vesicle-mediated transport interconnects the endomembrane system. These vesicles are formed by coat proteins via deformation of donor membranes. Here, we constructed a set of fluorescent protein-based markers for major coat protein complexes in the yeast model system, and examined their subcellular localization patterns. Our markers covered COPII, COPI, AP-1, AP-2, AP-3, and retromer complexes. Our live cell imaging demonstrates that COPII puncta were primarily associated with the endoplasmic reticulum (ER), and occasionally with early Golgi. COPI was present on both early Golgi and late Golgi/early endosomes. AP-1 puncta were present on late Golgi/early endosomes. AP-2 was present on plasma membrane (PM)-associated puncta, and around the bud neck. AP-3 puncta were present on late Golgi/early endosomes and on the surface of vacuoles. Retromer was present on the surface of vacuoles, late endosomes, and other perivacuolar puncta. Notably, more than half of AP-1 puncta and AP-3 puncta were not associated with the donor compartments where they are thought to be generated, implying that these were coated transport vesicles. This work provides a convenient tool set for the investigation of vesicular transport in yeast and live cell imaging evidence for the presence of certain coated transport vesicles. Full article
(This article belongs to the Section Biological Membranes)
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10 pages, 1102 KiB  
Article
Prediction of Propellant Electrostatic Sensitivity Based on Small-Sample Machine Learning Models
by Fei Wang, Kai Cui, Jinxiang Liu, Wenhai He, Qiuyu Zhang, Weihai Zhang and Tianshuai Wang
Aerospace 2025, 12(7), 622; https://doi.org/10.3390/aerospace12070622 - 11 Jul 2025
Viewed by 287
Abstract
Hydroxyl-terminated-polybutadiene (HTPB)-based composite solid propellants are extensively used in aerospace and defense applications due to their high energy density, thermal stability, and processability. However, the presence of highly sensitive energetic components in their formulations leads to a significant risk of accidental ignition under [...] Read more.
Hydroxyl-terminated-polybutadiene (HTPB)-based composite solid propellants are extensively used in aerospace and defense applications due to their high energy density, thermal stability, and processability. However, the presence of highly sensitive energetic components in their formulations leads to a significant risk of accidental ignition under electrostatic discharge, posing serious safety concerns during storage, transportation, and handling. To address this issue, this study explores the prediction of electrostatic sensitivity in HTPB propellants using machine learning techniques. A dataset comprising 18 experimental formulations was employed to train and evaluate six machine learning models. Among them, the Random Forest (RF) model achieved the highest predictive accuracy (R2 = 0.9681), demonstrating a strong generalization capability through leave-one-out cross-validation. Feature importance analysis using SHAP and Gini index methods revealed that aluminum, catalyst, and ammonium perchlorate were the most influential factors. These findings provide a data-driven approach for accurately predicting electrostatic sensitivity and offer valuable guidance for the rational design and safety optimization of HTPB-based propellant formulations. Full article
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17 pages, 7173 KiB  
Article
Inhibition of Matrix Metalloproteinase-7 Attenuates Subpleural Fibrosis in Rheumatoid Arthritis-Associated Interstitial Lung Disease
by Li Xiong, Li-Mei Liang, Shu-Yi Ye, Xiao-Lin Cui, Shi-He Hu, Chen-Yue Lian, Wen-Jia Sun, Yang-Ping Lv, He-De Zhang, Meng Wang, Fei Xiang, Liang Xiong, Hong Ye, Wan-Li Ma and Lin-Jie Song
Biomedicines 2025, 13(7), 1581; https://doi.org/10.3390/biomedicines13071581 - 27 Jun 2025
Viewed by 642
Abstract
Background: Rheumatoid arthritis-related interstitial lung disease (RA-ILD) is a significant complication of RA which lacks effective treatments with high mortality. This study aimed to investigate the role of matrix metalloproteinase-7 (MMP-7) in mediating RA-ILD. Methods: Based on the database of RA-ILD [...] Read more.
Background: Rheumatoid arthritis-related interstitial lung disease (RA-ILD) is a significant complication of RA which lacks effective treatments with high mortality. This study aimed to investigate the role of matrix metalloproteinase-7 (MMP-7) in mediating RA-ILD. Methods: Based on the database of RA-ILD patients, a bioinformatics analysis was performed. A protein–protein interaction (PPI) network focusing on MMP-7 was simulated. Pleural mesothelial cells (PMCs) were treated with RA-ILD patients’ serum or RA-ILD-related inflammatory factors, and the protein expressions of collagen-I and MMP-7 were examined. An arthritis model was established using complete Freund’s adjuvant (CFA). Changes in the weight and joints of mice were recorded, and lung tissues were evaluated by Masson staining and Sirius red stain techniques. MMP-7 inhibitor, MMP-7 siRNA and MMP shRNA lentivirus were used to inhibit MMP-7 and investigate changes in collagen-I and fibrosis in vivo and in vitro. Results: MMP-7 was found to be significantly expressed in RA-ILD lung tissue by bioinformatics analysis, and MMP-7 to maybe interact with collagen-I. In vitro experiments indicated cytokines IL-1β, IL-6 and TNF-α promoted MMP-7 and collagen-I expression in PMCs. Serum obtained from patients with RA-ILD also upregulated MMP-7 and collagen-I expression in PMCs. Inhibition of MMP-7 with MMP-7 siRNA or MMP inhibitor prevented collagen-I synthesis in PMCs. In vivo, CFA induced arthritis and subpleural lung inflammation in rats, but the MMP-7 inhibitor and MMP-7 siRNA attenuated CFA-induced lung inflammation and subpleural lung fibrosis. Conclusions: MMP-7 mediated subpleural lung inflammation as well as fibrosis in RA-ILD. It provided theoretical and experimental support for MMP-7 being a therapeutic target in RA-ILD. Full article
(This article belongs to the Special Issue Pathogenesis, Diagnostics, and Therapeutics for Rheumatic Diseases)
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24 pages, 9205 KiB  
Article
Estimation of Canopy Chlorophyll Content of Apple Trees Based on UAV Multispectral Remote Sensing Images
by Juxia Wang, Yu Zhang, Fei Han, Zhenpeng Shi, Fu Zhao, Fengzi Zhang, Weizheng Pan, Zhiyong Zhang and Qingliang Cui
Agriculture 2025, 15(12), 1308; https://doi.org/10.3390/agriculture15121308 - 18 Jun 2025
Cited by 1 | Viewed by 480
Abstract
The chlorophyll content is an important index reflecting the growth status and nutritional level of plants. The rapid, accurate and nondestructive monitoring of the SPAD content of apple trees can provide a basis for large-scale monitoring and scientific management of the growth status [...] Read more.
The chlorophyll content is an important index reflecting the growth status and nutritional level of plants. The rapid, accurate and nondestructive monitoring of the SPAD content of apple trees can provide a basis for large-scale monitoring and scientific management of the growth status of apple trees. In this study, the canopy leaves of apple trees at different growth stages in the same year were taken as the research object, and remote sensing images of fruit trees in different growth stages (flower-falling stage, fruit-setting stage, fruit expansion stage, fruit-coloring stage and fruit-maturing stage) were acquired via a DJI MAVIC 3 multispectral unmanned aerial vehicle (UAV). Then, the spectral reflectance was extracted to calculate 15 common vegetation indexes as eigenvalues, the 5 vegetation indexes with the highest correlation were screened out through Pearson correlation analysis as the feature combination, and the measured SPAD values in the leaves of the fruit trees were gained using a handheld chlorophyll meter in the same stages. The estimation models for the SPAD values in different growth stages were, respectively, established through five machine learning algorithms: multiple linear regression (MLR), partial least squares regression (PLSR), support vector regression (SVR), random forest (RF) and extreme gradient boosting (XGBoost). Additionally, the model performance was assessed by selecting the coefficient of determination (R2), root mean square error (RMSE) and mean absolute error (MAE). The results show that the SPAD estimation results vary from stage to stage, where the best estimation model for the flower-falling stage, fruit-setting stage and fruit-maturing stage is RF and those for the fruit expansion stage and fruit-coloring stage are PLSR and MLR, respectively. Among the estimation models in the different growth stages, the model accuracy for the fruit expansion stage is the highest, with R2 = 0.787, RMSE = 0.87 and MAE = 0.644. The RF model, which outperforms the other models in terms of the prediction effect in multiple growth stages, can effectively predict the SPAD value in the leaves of apple trees and provide a reference for the growth status monitoring and precise management of orchards. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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19 pages, 2323 KiB  
Article
Distribution Patterns and Water-Level-Driven Evolution Mechanisms of Arsenic in Shallow Groundwater in the Lower Yellow River
by Suhua Meng, Xiangquan Li, Xueqing Zhang, Xiangxiang Cui, Jinli Cui, Chen Su, Yuhong Fei, Shan Lei and Kun Liu
Sustainability 2025, 17(12), 5333; https://doi.org/10.3390/su17125333 - 9 Jun 2025
Viewed by 321
Abstract
Due to the lack of research on the temporal variation in As in the lower Yellow River and the extreme rainfall during the 2021 rainy season, this study aimed to investigate the As distribution patterns and their evolution driven by water level changes. [...] Read more.
Due to the lack of research on the temporal variation in As in the lower Yellow River and the extreme rainfall during the 2021 rainy season, this study aimed to investigate the As distribution patterns and their evolution driven by water level changes. Principal component analysis (PCA) revealed that As mobilization was predominantly controlled by redox conditions and mineral dissolution/desorption processes. The distribution of high-As water exhibited significant spatial variability, mainly located in the alluvial fan plain (14.97 μg/L) and marine-alluvial plain (22.5 μg/L). The average As concentrations in the study area decreased by 3.78 μg/L(11.55 μg/L in May and 7.77 μg/L in September). High-As groundwater was highly sensitive to water level fluctuations, while low-As groundwater was less affected. In the alluvial fan plain, As decreased with a 0–2 m groundwater level rise but increased when the level exceeded 4 m. A sedimentary zone–As distribution–water level sensitivity response model was proposed, which provides important reference value for developing groundwater exploitation and utilization plans. Full article
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15 pages, 5426 KiB  
Article
Mechanical Performance Enhancement of Self-Decoupling Magnetorheological Damper Enabled by Double-Graded High-Performance Magnetorheological Fluid
by Fei Guo, Hanbo Cui, Xiaojun Huang, Chengbin Du, Zongyun Mo and Xiaoguo Lin
Appl. Sci. 2025, 15(11), 6305; https://doi.org/10.3390/app15116305 - 4 Jun 2025
Viewed by 463
Abstract
Conventional magnetorheological fluids (MRFs) exhibit a constrained shear strength that restricts their deployment in high-performance damping systems. This study introduces a dual-axis innovation strategy combining material science and device physics to fundamentally redefine MRF capabilities. We develop a hierarchical particle architecture through the [...] Read more.
Conventional magnetorheological fluids (MRFs) exhibit a constrained shear strength that restricts their deployment in high-performance damping systems. This study introduces a dual-axis innovation strategy combining material science and device physics to fundamentally redefine MRF capabilities. We develop a hierarchical particle architecture through the controlled integration of micro/nano-sized carbonyl iron particles (CIPs), enhanced by polyethylene glycol/oleic acid surface engineering to optimize magnetic chain formation and interfacial bonding. The engineered MRF demonstrates a shear yield strength of 99.6 kPa at 0.757 T, surpassing conventional single-component MRFs by a significant margin. Integrated with a self-decoupling damper that isolates magnetic flux from mechanical motion, this synergistic design achieves exceptional force modulation: damping forces scale from 281.5 kN (5 mm stroke) to 300 kN (60 mm stroke), with current-regulated adjustability factors reaching 3.34. The system exhibits substantial improvements in both maximum damping force (93.9 kN enhancement) and energy dissipation efficiency compared to standard MRF dampers. Through co-optimization of the particle architecture and magnetic circuit design, this work establishes new performance benchmarks for smart fluid technology. The achieved force capacity and dynamic response characteristics directly address critical challenges in seismic engineering and industrial vibration control, where extreme load-bearing requirements demand simultaneous high strength and tunable damping capabilities. Full article
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13 pages, 3767 KiB  
Article
Tracing Experiments and Flow Characteristic Analyses in Carbonate Geothermal Reservoirs: A Case Study of the Juancheng Geothermal Field, North China
by Yanyu Jia, Kefu Li, Li Du, Chuanqing Zhu, Fei Gao, Long Cui, Yaorong Shen and Haowei Fu
Water 2025, 17(11), 1677; https://doi.org/10.3390/w17111677 - 1 Jun 2025
Viewed by 441
Abstract
Carbonate geothermal reservoirs, characterized by widespread distribution, a high discharge capacity, and favorable reinjection conditions, have become a key target for geothermal resource development. However, the karst geothermal reservoir system in the Juancheng geothermal field exhibits significant heterogeneity, leading to substantial disparities in [...] Read more.
Carbonate geothermal reservoirs, characterized by widespread distribution, a high discharge capacity, and favorable reinjection conditions, have become a key target for geothermal resource development. However, the karst geothermal reservoir system in the Juancheng geothermal field exhibits significant heterogeneity, leading to substantial disparities in productivity among multiple geothermal wells and severely restricting efficient regional exploitation. This study systematically investigates the hydraulic characteristics and development potential of the karst geothermal reservoir in the Juancheng geothermal field using sodium fluorescein tracing experiment technology. The results reveal that the reservoir system contains multiple flow channels with distinct permeability differences. The dominant flow pathways, controlled by fault structures, exhibit an apparent velocity of up to 10.98 m/h, significantly higher than other regions in the study area. In contrast, low-permeability zones, influenced by the burial depth of the Ordovician strata, show poor connectivity due to limited karst development, with the lowest apparent velocity of only 1.03 m/h. By integrating pumping test data and tracer response characteristics, the dominant flow direction (northeast) demonstrates a stronger recharge capacity and water abundance, offering a higher development value. Conversely, the southeast low-permeability zone has weaker water production and constrained recharge conditions, resulting in a relatively limited development potential. Additionally, it is recommended that the direction of future geothermal well placement in the Juancheng geothermal field should avoid being parallel to the fault strike to prolong the thermal breakthrough arrival time. In regions with deeper Ordovician strata burial, denser well network deployment is suggested to enhance the reservoir utilization efficiency. Full article
(This article belongs to the Section Hydrogeology)
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12 pages, 2936 KiB  
Article
Synthesis of Well-Crystallized Cu-Rich Layered Double Hydroxides and Improved Catalytic Performances for Water–Gas Shift Reaction
by Shicheng Liu, Yinjie Hu, Qian Zhang, Xia Tan, Haonan Cui, Fei Li, Huibin Lei and Ou Zhuo
Catalysts 2025, 15(6), 546; https://doi.org/10.3390/catal15060546 - 30 May 2025
Viewed by 568
Abstract
Cu-based layered double hydroxides (LDH) have been extensively employed as catalyst precursors. However, due to the Jahn–Teller effect of copper ions, it is a challenge to synthesize well-crystallized LDH with a high Cu content, which usually contains considerable CuO impurity. By adding competitive [...] Read more.
Cu-based layered double hydroxides (LDH) have been extensively employed as catalyst precursors. However, due to the Jahn–Teller effect of copper ions, it is a challenge to synthesize well-crystallized LDH with a high Cu content, which usually contains considerable CuO impurity. By adding competitive ligands during the coprecipitation process, such as glycine, a well-crystallized Cu-rich LDH with less CuO impurity was successfully synthesized. The Cu-Mg-Al mixed oxides derived from the well-crystallized Cu-rich LDH have relatively high SBET, large pore volume, and well dispersion of Cu nanoparticles. The derived catalyst exhibited unexpectedly high catalytic activity in the water–gas shift (WGS) reaction, and the mass-specific reaction rate was reached as high as 33.5 μmolCO·gcat1·s−1 at 200 °C. The high catalytic activity of this catalyst may originate from the high SBET and well dispersion of Cu particles and metal oxides. Moreover, the derived catalyst also displayed outstanding long-term stability in the WGS reaction, which should benefit from the enhanced metal–support interaction. Full article
(This article belongs to the Special Issue Sustainable Catalysis for Green Chemistry and Energy Transition)
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16 pages, 17291 KiB  
Article
Effect of Waterglass on the Hydration Process of Slag-Fly Ash-Based Geopolymer
by Ran Hai, Qingpu Guan, Xiaorong Zhang, Fei Yang, Li Cui and Junxia Liu
Materials 2025, 18(11), 2450; https://doi.org/10.3390/ma18112450 - 23 May 2025
Viewed by 357
Abstract
Geopolymers possess good mechanical properties and durability, and their partial replacement of traditional Portland cement is noteworthy for promoting the development of low-carbon building materials. To clarify the influence mechanism of the mechanical properties of slag-fly ash-based geopolymer mortar, this paper investigated the [...] Read more.
Geopolymers possess good mechanical properties and durability, and their partial replacement of traditional Portland cement is noteworthy for promoting the development of low-carbon building materials. To clarify the influence mechanism of the mechanical properties of slag-fly ash-based geopolymer mortar, this paper investigated the hydration heat, composition, and morphology of hydration products with various contents and moduli of waterglass. The results showed that the compressive strength of geopolymer mortar increased with increasing waterglass content, and first rose and then fell as the waterglass modulus raised, while its flexural strength increased and then decreased with the growth in both. The compressive and flexural strength of geopolymer mortar with 1.2-modulus waterglass at 20 wt% cured for 28 days were 88.4 MPa and 9.0 MPa, respectively. The hydration temperature and cumulative hydration heat of geopolymer mortar was elevated with the increase in waterglass content, and declined with the rising waterglass modulus. The hydration products of the geopolymer consisted of dense amorphous and flocculent structures wrapped around each other. The microstructure of the geopolymer cured for 3 days was loose when the content of 1.4-modulus waterglass was 5 wt%. The relative areas of the flocculation in the geopolymer cured for 28 days increased while the waterglass modulus was greater than 1.4, forming an interface with the dense amorphous structure generated during the early hydration stage, leading to a decrease in its mechanical properties. Therefore, it is recommended for slag-fly ash geopolymer mortar that the waterglass modulus is between 1.2 and 1.4 and its content is no less than 10 wt% to ensure suitable mechanical properties. This study also provided a referenceable time period for the pouring and operation of the engineering application of slag-fly ash-based geopolymer repair mortar. Full article
(This article belongs to the Section Construction and Building Materials)
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19 pages, 6998 KiB  
Article
Two Opposite Change Patterns Before Small Earthquakes Based on Consecutive Measurements of Hydrogen and Oxygen Isotopes at Two Seismic Monitoring Sites in Northern Beijing, China
by Yuxuan Chen, Fuqiong Huang, Leyin Hu, Zhiguo Wang, Mingbo Yang, Peixue Hua, Xiaoru Sun, Shijun Zhu, Yanan Zhang, Xiaodong Wu, Zhihui Wang, Lvqing Xu, Kongyan Han, Bowen Cui, Hongyan Dong, Boxiu Fei and Yonggang Zhou
Geosciences 2025, 15(6), 192; https://doi.org/10.3390/geosciences15060192 - 22 May 2025
Viewed by 514
Abstract
In comparison with conventional hydrological parameters such as water levels and temperatures, geochemical changes induced by earthquakes have become increasingly important. It should be noted that hydrogen (δ2H) and oxygen isotopes (δ18O) offer the greatest potential as precursor proxies [...] Read more.
In comparison with conventional hydrological parameters such as water levels and temperatures, geochemical changes induced by earthquakes have become increasingly important. It should be noted that hydrogen (δ2H) and oxygen isotopes (δ18O) offer the greatest potential as precursor proxies of earthquakes. Here, we conducted high-resolution sampling (weekly, 59 samples), measuring consecutive δ2H and δ18O levels at the two sites of the WLY well and SS spring in the Yan-Huai Basin of Beijing from June 2021 to June 2022. During the period of this sampling, several small earthquakes of ML > 1.6 occurred in Beijing. We used statistical methods (analysis of variance) to test the significant differences, used Self-Organizing Maps (SOMs) for data clustering, and then used Bayesian Mixing Models (MixSIAR) to calculate the proportions of the source contributions. We found significant four-stage patterns of change processes in δ2H and δ18O at both sites. The WLY well exhibited a distinct four-stage variation pattern: initial stable development (WT1) followed by a rapid rise (WT2) and sudden fall (WT3) before the small earthquakes, and finally gradual stabilization after earthquakes (WT4). In contrast, the SS spring displayed an inverse pattern, beginning with stable development (ST1), then undergoing a rapid falling (ST2) and sudden rising (ST3) before the small earthquakes, and finally stabilizing through stepwise reduction after the earthquakes (ST4). The most likely mechanisms were differences in the time of rupture between the carbonate in WLY and granite in SS under sustained stress. The stress induced source mixing of fluid from the surface or deeper groundwater-source reservoirs. The hypothesis was supported by the MixSIAR model, calculating the variational proportion of source contributions in the four stages. This work permitted the use of high-resolution isotopic data for statistical confirmation of concomitant shifts during the earthquakes, provided the mechanisms behind them, and highlighted the potential for the consecutive monitoring of hydrogen and oxygen isotopes indicators in earthquake-prediction studies. Full article
(This article belongs to the Special Issue Editorial Board Members' Collection Series: Natural Hazards)
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24 pages, 12086 KiB  
Article
Integrative Spatial Proteomics and Single-Cell RNA Sequencing Unveil Molecular Complexity in Rheumatoid Arthritis for Novel Therapeutic Targeting
by Xue Wang, Fei Wang, Archana S. Iyer, Heather Knight, Lori J. Duggan, Yingli Yang, Liang Jin, Baoliang Cui, Yupeng He, Jan Schejbal, Lucy A. Phillips, Bohdan P. Harvey, Sílvia Sisó and Yu Tian
Proteomes 2025, 13(2), 17; https://doi.org/10.3390/proteomes13020017 - 22 May 2025
Viewed by 3338
Abstract
Understanding the heterogeneity of Rheumatoid Arthritis (RA) and identifying therapeutic targets remain challenging using traditional bulk transcriptomics alone, as it lacks the spatial and protein-level resolution needed to fully capture disease and tissue complexities. In this study, we applied Laser Capture Microdissection (LCM) [...] Read more.
Understanding the heterogeneity of Rheumatoid Arthritis (RA) and identifying therapeutic targets remain challenging using traditional bulk transcriptomics alone, as it lacks the spatial and protein-level resolution needed to fully capture disease and tissue complexities. In this study, we applied Laser Capture Microdissection (LCM) coupled with mass spectrometry-based proteomics to analyze histopathological niches of the RA synovium, enabling the identification of protein expression profiles of the diseased synovial lining and sublining microenvironments compared to their healthy counterparts. In this respect, key pathogenetic RA proteins like membrane proteins (TYROBP, AOC3, SLC16A3, TCIRG1, and NCEH1), and extracellular matrix (ECM) proteins (PLOD2, OGN, and LUM) showed different expression patterns in diseased synovium compartments. To enhance our understanding of cellular dynamics within the dissected regions, we further integrated the proteomic dataset with single-cell RNA sequencing (scRNA-seq), and deduced cell type enrichment, including T cells, fibroblasts, NK cells, myeloid cells, B cells, and synovial endothelial cells. By combining high-resolution spatial proteomics and transcriptomic analyses, we provide novel insights into the molecular mechanisms driving RA, and highlight potential protein targets for therapeutic intervention. This integrative approach offers a more comprehensive view of RA synovial pathology, and mitigates the limitations of traditional bulk transcriptomics in target discovery. Full article
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15 pages, 2067 KiB  
Article
Insights into Chemoreceptor MCP2201-Sensing D-Malate
by Rui Cui, Jie Li, Yuan Hong, Lu Guo, Yun-Hao Wang, Yi-Fei Bai and De-Feng Li
Int. J. Mol. Sci. 2025, 26(10), 4902; https://doi.org/10.3390/ijms26104902 - 20 May 2025
Viewed by 430
Abstract
Bacterial chemoreceptors sense extracellular stimuli and drive bacteria toward a beneficial environment or away from harm. Their ligand-binding domains (LBDs) are highly diverse in terms of sequence and structure, and their ligands cover various chemical molecules that could serve as nitrogen, carbon, and [...] Read more.
Bacterial chemoreceptors sense extracellular stimuli and drive bacteria toward a beneficial environment or away from harm. Their ligand-binding domains (LBDs) are highly diverse in terms of sequence and structure, and their ligands cover various chemical molecules that could serve as nitrogen, carbon, and energy sources. The mechanism of how this diverse range of LBDs senses different ligands is essential to signal transduction. Previously, we reported that the chemoreceptor MCP2201 from Comamonas testosteroni CNB-1 sensed citrate and L-malate, altered the ligand-free monomer–dimer equilibrium of LBD to citrate-bound monomer (with limited monomer) and L-malate-bound dimer, and triggered positive and negative chemotactic responses. Here, we present our findings, showing that D-malate binds to MCP2201, induces LBD dimerization, and triggers the chemorepellent response exactly as L-malate did. A single site mutation, T105A, can alter the D-malate-bound LBD dimer into a monomer–dimer equilibrium and switch the negative chemotactic response to D-malate to a positive one. Differences in attractant-bound LBD oligomerization, such as citrate-bound wildtype LBD monomer and D-malate-bound T105A dimer, indicated that LBD oligomerization is a consequence of signal transduction instead of a trigger. Our study expands our knowledge of chemoreceptor-sensing ligands and provides insight into the evolution of bacterial chemoreceptors. Full article
(This article belongs to the Special Issue Membrane Proteins: Structure, Function, and Drug Discovery)
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20 pages, 10972 KiB  
Article
Renalase Overexpression-Mediated Excessive Metabolism of Peripheral Dopamine, DOPAL Accumulation, and α-Synuclein Aggregation in Baroreflex Afferents Contribute to Neuronal Degeneration and Autonomic Dysfunction
by Xue Xiong, Yin-Zhi Xu, Yan Zhang, Hong-Fei Zhang, Tian-Min Dou, Xing-Yu Li, Zhao-Yuan Xu, Chang-Peng Cui, Xue-Lian Li and Bai-Yan Li
Biomedicines 2025, 13(5), 1243; https://doi.org/10.3390/biomedicines13051243 - 20 May 2025
Viewed by 571
Abstract
Background/Objectives: Increasing evidence reveals the likely peripheral etiology of Parkinson’s disease; however, the mechanistic insight into α-Synuclein aggregation in the periphery remains unclear. This study aimed to explore the effect of abnormal expression of renalase on dopamine metabolism, toxic DOPAL generation, and [...] Read more.
Background/Objectives: Increasing evidence reveals the likely peripheral etiology of Parkinson’s disease; however, the mechanistic insight into α-Synuclein aggregation in the periphery remains unclear. This study aimed to explore the effect of abnormal expression of renalase on dopamine metabolism, toxic DOPAL generation, and subsequently, α-Synuclein aggregation. Methods: Blood pressure (BP) was monitored while changing the body position of rats; the serum level of renalase was detected by ELISA; the mRNA/protein of renalase and α-Synuclein were determined by qRT-PCR/Western blot; DOPAL was measured using HPLC; renalase distribution was explored by immunostaining; cell viability and ultrastructure were examined by TUNEL and electron microscopy, respectively. Results: The results showed that, in PD model rats, the serum level of renalase was increased time-dependently with up-regulated renalase gene/protein expression in the nodose ganglia, nucleus tractus solitarius, and heart; a reduced dopamine content was also detected by the renalase overexpression in PC12 cells. Strikingly, up-regulated renalase and orthostatic BP changes were observed before the behavioral changes in the model rats. Meanwhile, the levels of DOPAL and α-Synuclein were increased time-dependently. Intriguingly, the low molecular weight of α-Synuclein declined coordinately with the increase in the higher molecular weight of α-Synuclein. Clear ultrastructure damage at the cellular level supported the notion of molecular findings. Notably, the α-Synuclein aggregation-induced impairment of the axonal transport function predates neuronal degeneration mediated by renalase overexpression. Conclusions: Our results demonstrate that abnormal peripheral dopamine metabolism mediated by overexpressed renalase promotes the DOPAL-induced α-Synuclein and leads to baroreflex afferent neuronal degeneration and early autonomic failure. Full article
(This article belongs to the Special Issue Challenges in the Diagnosis and Treatment of Parkinson’s Disease)
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