Emergence and Re-Emergence of Animal Viral Diseases

A special issue of Pathogens (ISSN 2076-0817). This special issue belongs to the section "Emerging Pathogens".

Deadline for manuscript submissions: 30 June 2025 | Viewed by 2765

Special Issue Editor


E-Mail Website
Guest Editor
United States Department of Agriculture, National Veterinary Services Laboratories, Animal and Plant Health Inspection Services, Foreign Animal Disease Diagnostic Lab, Reagent and Vaccine Services Sections, Plum Island Animal Disease Center, 40550 Route 25, Orient, NY 11957, USA
Interests: virology; molecular characterization; foreign animal diseases diagnostics; new assay development; WGS

Special Issue Information

Dear Colleagues,

The emergence and re-emergence of animal viral diseases have become critical concerns in both veterinary and public health domains. Emerging diseases are those that have newly appeared or are rapidly increasing in incidence, while re-emerging diseases refer to those that were once under control but are now reappearing, often in new forms or locations. This dynamic phenomenon is driven by a complex interplay of ecological, environmental, and technological factors.

One significant factor contributing to the emergence of new viral diseases is the increased interaction between wildlife, livestock, and humans. Habitat destruction, climate change, and globalization have facilitated the spread of viruses across different species and regions. For instance, the zoonotic transmission of viruses from animals to humans can occur when humans encroach on wildlife habitats or consume animal products. This underscores the necessity of developing new tools and methods to identify and manage these threats effectively.

Recent advancements in assay development have revolutionized our approach to detecting and characterizing animal viral diseases. Modern diagnostic assays, including highly sensitive and specific polymerase chain reaction (PCR) methods, enzyme-linked immunosorbent assays (ELISAs), and rapid antigen tests, have greatly improved our ability to identify pathogens in clinical samples. These assays enable early detection of viral infections, which is crucial for timely intervention and control measures.

Molecular characterization of viral pathogens plays a pivotal role in understanding their epidemiology and pathogenicity. By analyzing the genetic makeup of viruses, researchers can identify specific viral strains and track their evolution over time. This process often involves techniques such as nucleotide sequencing and genome-wide analyses, which provide insights into viral mutations, recombination’s, and adaptations that may influence disease dynamics. For example, the identification of novel viral genomes has led to the discovery of previously unrecognized viral species and variants, enhancing our capacity to respond to emerging threats.

Whole-genome sequencing (WGS) has further advanced our understanding of animal viral diseases by providing comprehensive information about viral genomes. WGS allows for the detailed analysis of genetic variations and the identification of genetic markers associated with pathogenicity and transmissibility. This information is crucial for developing targeted vaccines and therapeutics, as well as for monitoring the spread and evolution of viruses in animal populations.

Foreign animal diseases, which are diseases not previously present in a particular region, pose significant risks to agriculture and wildlife. These diseases can be introduced through international trade, travel, or other means, leading to outbreaks that can have devastating economic and ecological impacts. Recent examples include the African swine fever (ASF) and the foot-and-mouth disease (FMD), both of which have caused substantial losses in affected regions. Effective surveillance and control strategies are essential for preventing the introduction and spread of these foreign diseases.

The interplay between emerging and re-emerging animal viral diseases highlights the need for ongoing research and innovation. Enhanced diagnostic assays, molecular characterization techniques, and WGS are critical components of a robust disease surveillance and management system. By leveraging these advanced tools, scientists and veterinarians can better understand, detect, and control viral diseases, ultimately protecting animal health and mitigating risks to human populations. As we advance our capabilities in these areas, a coordinated global effort will be essential to address the challenges posed by animal viral diseases and safeguard both animal and human health.

Dr. Zaheer Ahmed
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Pathogens is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2200 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • animal viral diseases
  • virus emergence
  • molecular characterization
  • novel assays
  • whole-genome sequencing (WGS)
  • foreign animal diseases
  • disease surveillance and monitoring
  • pathogen evolution
  • diagnostic innovations
  • epidemiological trends

Benefits of Publishing in a Special Issue

  • Ease of navigation: Grouping papers by topic helps scholars navigate broad scope journals more efficiently.
  • Greater discoverability: Special Issues support the reach and impact of scientific research. Articles in Special Issues are more discoverable and cited more frequently.
  • Expansion of research network: Special Issues facilitate connections among authors, fostering scientific collaborations.
  • External promotion: Articles in Special Issues are often promoted through the journal's social media, increasing their visibility.
  • e-Book format: Special Issues with more than 10 articles can be published as dedicated e-books, ensuring wide and rapid dissemination.

Further information on MDPI's Special Issue policies can be found here.

Published Papers (3 papers)

Order results
Result details
Select all
Export citation of selected articles as:

Research

Jump to: Other

16 pages, 2330 KiB  
Article
Differentially Expressed miRNA Profiles in Serum-Derived Exosomes from Cattle Infected with Lumpy Skin Disease Virus
by Anh Duc Truong, Ha Thi Thanh Tran, Lanh Phan, Thi Hoai Phan, Nhu Thi Chu, Thi Hao Vu, Hieu Minh Nguyen, Linh Phuong Nguyen, Chaeeun Kim, Hoang Vu Dang and Yeong Ho Hong
Pathogens 2025, 14(2), 176; https://doi.org/10.3390/pathogens14020176 - 10 Feb 2025
Cited by 1 | Viewed by 909
Abstract
Exosomal miRNAs from individual cells are crucial in regulating the immune response to infectious diseases. In this study, we performed small RNA sequencing (small RNA-seq) analysis to identify the expressed and associated exosomal miRNAs in the serum of cattle infected with lumpy skin [...] Read more.
Exosomal miRNAs from individual cells are crucial in regulating the immune response to infectious diseases. In this study, we performed small RNA sequencing (small RNA-seq) analysis to identify the expressed and associated exosomal miRNAs in the serum of cattle infected with lumpy skin disease virus (LSDV). Cattle were infected with a 106.5 TCID50/mL LSDV Vietnam/HaTinh/CX01 (HT10) strain and exosomal miRNA expression in the serum of infected cattle was analyzed using small RNA sequencing (small RNA-seq). We identified 59 differentially expressed (DE) miRNAs in LSDV-infected cattle compared to uninfected controls, including 18 upregulated and 41 downregulated miRNAs. These 59 miRNAs were used to predict 7656 target genes. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses revealed that the target genes were enriched in several biological processes and pathways associated with viral replication, immune response, virus–host interactions, and signal transduction. Additionally, we identified 708 potentially novel cattle miRNAs corresponding to 710 genomic loci. The transcription levels of five miRNA genes (bta-miR-11985, bta-miR-1281, bta-miR-12034, bta-miR-let-7i, and bta-miR-17-5p) were validated using reverse transcription quantitative real-time PCR, showing consistency with the small RNA-seq results. Overall, these findings provide significant insights into the immune and protective responses during LSDV infection in cattle, offering valuable information on identifying new biomarkers and understanding the pathogenesis of LSDV. Full article
(This article belongs to the Special Issue Emergence and Re-Emergence of Animal Viral Diseases)
Show Figures

Figure 1

14 pages, 1730 KiB  
Article
Establishment of a Quadruplex RT-qPCR for the Detection of Canine Coronavirus, Canine Respiratory Coronavirus, Canine Adenovirus Type 2, and Canine Norovirus
by Kaichuang Shi, Yandi Shi, Yuwen Shi, Feng Long, Yanwen Yin, Yi Pan, Zongqiang Li and Shuping Feng
Pathogens 2024, 13(12), 1054; https://doi.org/10.3390/pathogens13121054 - 29 Nov 2024
Viewed by 936
Abstract
Canine coronavirus (CCoV), canine respiratory coronavirus (CRCoV), canine adenovirus type 2 (CAV-2), and canine norovirus (CNV) are important pathogens for canine viral gastrointestinal and respiratory diseases. Especially, co-infections with these viruses exacerbate the damages of diseases. In this study, four pairs of primers [...] Read more.
Canine coronavirus (CCoV), canine respiratory coronavirus (CRCoV), canine adenovirus type 2 (CAV-2), and canine norovirus (CNV) are important pathogens for canine viral gastrointestinal and respiratory diseases. Especially, co-infections with these viruses exacerbate the damages of diseases. In this study, four pairs of primers and probes were designed to specifically amplify the conserved regions of the CCoV M gene, CRCoV N gene, CAV-2 hexon gene, and CNV RdRp gene. After optimizing different reaction conditions, a quadruplex RT-qPCR was established for the detection of CCoV, CRCoV, CAV-2, and CNV. The specificity, sensitivity, and repeatability of the established assay were evaluated. Then, the assay was used to test 1688 clinical samples from pet hospitals in Guangxi province of China during 2022–2024 to validate its clinical applicability. In addition, these samples were also assessed using the reported reference RT-qPCR assays, and the agreements between the developed and reference assays were determined. The results indicated that the quadruplex RT-qPCR could specifically test only CCoV, CRCoV, CAV-2, and CNV, without cross-reaction with other canine viruses. The assay had high sensitivity with limits of detection (LODs) of 1.0 × 102 copies/reaction for CCoV, CRCoV, CAV-2, and CNV. The repeatability was excellent, with intra-assay variability of 0.19–1.31% and inter-assay variability of 0.10–0.88%. The positivity rates of CCoV, CRCoV, CAV-2, and CNV using the developed assay were 8.59% (145/1688), 8.65% (146/1688), 2.84% (48/1688), and 1.30% (22/1688), respectively, while the positivity rates using the reference assays were 8.47% (143/1688), 8.53% (144/1688), 2.78% (47/1688), and 1.24% (21/1688), respectively, with agreements of more than 99.53% between two methods. In conclusion, a quadruplex RT-qPCR with high sensitivity, specificity, and repeatability was developed for rapid, and accurate detection of CCoV, CRCoV, CAV-2, and CNV. Full article
(This article belongs to the Special Issue Emergence and Re-Emergence of Animal Viral Diseases)
Show Figures

Figure 1

Other

Jump to: Research

5 pages, 443 KiB  
Brief Report
Evaluation of Rapid Influenza Diagnostic Tests for the Detection of H5N1 in Milk
by Missiani Ochwoto, Franziska Kaiser, Claude Kwe Yinda, Arthur Wickenhagen and Vincent J. Munster
Pathogens 2025, 14(4), 325; https://doi.org/10.3390/pathogens14040325 - 28 Mar 2025
Viewed by 503
Abstract
Rapid influenza diagnostic tests (RIDTs) could be useful in the current bovine H5N1 outbreak. Here, we evaluated three RIDTs with H5N1. The RDITs showed comparable sensitivity with H5N1 compared to seasonal influenza A virus H3N2, and no difference was observed in sensitivity between [...] Read more.
Rapid influenza diagnostic tests (RIDTs) could be useful in the current bovine H5N1 outbreak. Here, we evaluated three RIDTs with H5N1. The RDITs showed comparable sensitivity with H5N1 compared to seasonal influenza A virus H3N2, and no difference was observed in sensitivity between raw milk and the PBS control. Full article
(This article belongs to the Special Issue Emergence and Re-Emergence of Animal Viral Diseases)
Show Figures

Figure 1

Back to TopTop