Skip to Content

Methods and Protocols, Volume 1, Issue 2

2018 June - 14 articles

Cover Story: In vivo experiments in animal models of disease are of crucial importance for viral tropism and pathogenesis studies. However, these experiments must be founded on solid in vitro and ex vivo model systems. In this protocol, we describe the preparation and ex vivo infection of lung slices from different mammalian species with various recombinant respiratory viruses expressing fluorescent reporter proteins. View this paper.
  • Issues are regarded as officially published after their release is announced to the table of contents alert mailing list .
  • You may sign up for email alerts to receive table of contents of newly released issues.
  • PDF is the official format for papers published in both, html and pdf forms. To view the papers in pdf format, click on the "PDF Full-text" link, and use the free Adobe Reader to open them.

Articles (14)

  • Review
  • Open Access
18 Citations
6,052 Views
31 Pages

Ionic liquids (ILs) have advanced a variety of applications, including matrix-assisted laser desorption/ionization–mass spectrometry (MALDI–MS). ILs can be used as matrices and solvents for analyte extraction and separation prior to analy...

  • Article
  • Open Access
13 Citations
4,146 Views
12 Pages

A Novel Method for the Combined Photocatalytic Activity Determination and Bandgap Estimation

  • Mattia Pierpaoli,
  • Orlando Favoni,
  • Gabriele Fava and
  • Maria Letizia Ruello

The ability of a photocatalyst to degrade a target pollutant is a commonly used method to assess its effectiveness for environmental applications, while ultraviolet-visible (UV-vis) spectroscopy and spectroscopic ellipsometry are conventional techniq...

  • Protocol
  • Open Access
27 Citations
14,137 Views
9 Pages

The prevalence of non-alcoholic fatty liver disease (NAFLD) and its advanced form, nonalcoholic steatohepatitis (NASH), is increasing, and as such its contribution to the development of hepatocellular carcinoma is also rising. NAFLD has been shown to...

  • Technical Note
  • Open Access
10 Citations
7,674 Views
11 Pages

Immunofluorescence staining has become an essential tool in pathology and biomedical sciences to identify rare cells, cell–cell interactions, and submicroscopic cellular components. Many experimental settings, however, suffer from the fact that tradi...

  • Review
  • Open Access
7 Citations
6,501 Views
12 Pages

Function of the RNA Coliphage Qβ Proteins in Medical In Vitro Evolution

  • Rana L. Singleton,
  • Carrie A. Sanders,
  • Kevin Jones,
  • Bobby Thorington,
  • Timothy Egbo,
  • Mamie T. Coats and
  • Alain Bopda Waffo

Qβ is a positive (+) single-stranded RNA bacteriophage covered by a 25 nm icosahedral shell. Qβ belongs to the family of Leviviridae and is found throughout the world (bacterial isolates and sewage). The genome of Qβ is about 4.2 kb, c...

  • Protocol
  • Open Access
78 Citations
19,774 Views
9 Pages

The chick chorioallantoic membrane (CAM) is an extra-embryonic membrane, comprised of a high density of blood and lymphatic vessels. CAM has a dense capillary network and is commonly used to study in vivo angiogenesis and anti-angiogenesis in respons...

  • Protocol
  • Open Access
20 Citations
9,038 Views
8 Pages

Cas9 is a site-specific RNA-guided endonuclease (RGEN) that can be used for precise genome editing in various cell types from multiple species. Ribonucleoprotein (RNP) complexes, which contains the Cas9 protein in complex with a guide RNA, are suffic...

  • Protocol
  • Open Access
24 Citations
11,724 Views
33 Pages

CRISPR-Cas9 is revolutionizing the field of genome editing in non-model organisms. The robustness, ease of use, replicability and affordability of the technology has resulted in its widespread adoption among researchers. The African butterfly Bicyclu...

  • Benchmark
  • Open Access
10 Citations
8,179 Views
20 Pages

Most natural DNA and RNA are devoid of long trinucleotide (TN) sequences that lack one specific nucleotide (missing nucleotide (MN)). Here we developed a novel method that is based on rolling circle amplification (RCA), in which the TN-information of...

  • Benchmark
  • Open Access
1 Citations
4,125 Views
7 Pages

Osteoblast/osteocyte cultures continue to emerge as essential tools for bone biology research in vitro. The change in cell number is an important parameter to be considered for investigating osteogenic differentiation. However, there is no reliable m...

  • Protocol
  • Open Access
5 Citations
13,295 Views
7 Pages

Coomassie brilliant blue (CBB) dyes have been commonly used for the staining of protein bands in polyacrylamide gel electrophoresis (PAGE) gels. However, the staining and destaining of CBB dyes are time-consuming, and the use of methanol is hazardous...

  • Protocol
  • Open Access
10 Citations
5,312 Views
9 Pages

Paramyxovirus Infections in Ex Vivo Lung Slice Cultures of Different Host Species

  • Rory D. De Vries,
  • Linda J. Rennick,
  • W. Paul Duprex and
  • Rik L. De Swart

In vivo experiments in animal models of disease are of crucial importance for viral tropism and pathogenesis studies. However, these experiments must be complemented with in vitro and ex vivo experiments. Here, we describe a protocol for the preparat...

  • Protocol
  • Open Access
7 Citations
5,975 Views
9 Pages

Intussusception in Young Children: Protocol for Multisite Hospital Sentinel Surveillance in India

  • Manoja Kumar Das,
  • Narendra Kumar Arora,
  • Jan Bonhoeffer,
  • Patrick L. F. Zuber and
  • Christine G. Maure

India has recently introduced a rotavirus vaccine under a universal immunization program. There is limited information on intussusception, an adverse event, following immunization in children from India. We are conducting sentinel surveillance for in...

  • Technical Note
  • Open Access
13 Citations
6,362 Views
8 Pages

High Performance Liquid Chromatography Separation of Epigenetic Cytosine Variants

  • Caroline E. Roberts,
  • Gregory M. Raner and
  • Gary D. Isaacs

Epigenetic modifications enable cells to genetically respond to chemical inputs from environmental sources. These marks play a pivotal role in normal biological processes (e.g., differentiation, host defense and metabolic programs) but also contribut...

Get Alerted

Add your email address to receive forthcoming issues of this journal.

XFacebookLinkedIn
Methods Protoc. - ISSN 2409-9279