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CC
  • Review
  • Open Access

28 February 2026

41 Pages

Spin Covalent Chemistry of Carbon

Institute of Physical Researches and Technology, Peoples’ Friendship University of Russia (RUDN University), 117198 Moscow, Russia
This article belongs to the Special Issue 10th Anniversary of C — Journal of Carbon Research

Abstract

This review presents the covalent chemistry of carbon from the point of the spin-radical concept of electron interaction in the framework of the unrestricted molecular orbitals (UHF MO) theory. Using the language of valence bond trimodality, the regions of classical spinless spin-symmetric covalence and its spin-dependent asymmetric counterpart are defined. Carbon is the only element exhibiting spin covalent chemistry. Classical covalent chemistry of carbon of molecular substances whose valence bond structure includes segregate or chained single sp3 C C bonds meet its spin counterpart only at these bonds breaking. Substances with double sp2 C = C and triple sp1 C C bonds are the subject of spin covalent chemistry of carbon. The mathematical apparatus of the UHF MO allows forming algorithms controlling the chemical modification of carbon substances, polymerization processes, and catalysis involving them, making it possible to supplement the empirical spin covalent chemistry of carbon with its virtual analog.

1. Introduction

The covalent realm of modern chemistry is populated by pairs of bonded neutral atoms, representing one of the most deeply ingrained and convenient graphical representations of interatomic interactions in matter. The wide diversity of these pairs, possible for virtually any element in Mendeleev’s periodic table, is the fundamental basis of this representation perfection. Carbon stands out in this context—an atom that forms only covalent bonds with atoms of other elements and possesses the unique ability to form three types of covalent bonds with itself. The bond trimodality is so widespread in nature that it allows us to distinguish a distinct, extensive class of substances whose atoms are held together by purely carbon covalent C C bonds, realized as a three-mode set of single sp3 C C , double sp2 C = C , and triple sp1 C C bonds. The prefix spn denotes one of three possible configurations of 2 s and 2 p electrons that provide the chemical bond between two carbon atoms.
The empirical discovery and theoretical justification of the trimodality of C C bonds underly the covalent chemistry of pure carbon compounds, which consist of both branched networks of and lone C2 atomic pairs. The first configuration is characteristic of solid-state pure spn carbons, polymers, a large particular class of nanocarbons, while the second applies to individual molecules, the number of which is virtually countless. Acquaintance with the unique empirical diversity of carbon took centuries. It would not be an exaggeration to say that it was those accumulated empirical data that stimulated the development of the molecular theory of carbon. This theory is just over 100 years old and is associated with the introduction of the concept of a covalent bond formed by a pair of electrons of the bonding atoms, illustrated by Lewis using the example of the methane molecule [1]. Ten years later, Heitler and London proposed a quantum-mechanical justification for the covalent bond as a consequence of the overlap of the atomic orbitals [2]. A pair of electrons forming a covalent bond and the overlap of the corresponding electron orbitals form the conceptual basis for the Heitler–London valence bond (VB) [3] and Hartree–Fock molecular orbitals (MO) [4] theories, widely used to this day. The multiplicity of electron pairs is logically continued with the existence of single, double, and triple C C bonds. The orbital difference of 2s and 2p valence electrons of the carbon atom, leading to differences in the degree of overlap of their orbitals in pairs, is reflected in the notation of σ and π electrons. The electron spins of the pairs are viewed as antiparallel, and each pair of bonding electrons occupies the same molecular orbital. Accordingly, the basic classical VB and MO theoretical concepts are spin-symmetric and can be referred to as the restricted Heitler-London (RHL) and restricted Hartree-Fock (RHF) approximations, respectively. Accordingly, the ground states of both individual C C bonds and their combinations are a singlet, which gave rise to the standard presentation of a spinless classical covalent bonding of carbon atoms and stable, chemically inactive molecules they form.
The classical theory of the carbon covalence is confirmed by countless examples of carbon compounds that include all three types of covalent bonds. However, while this is fully expected in the case of valence-saturated single sp3 C C bonds, in the case of valence-unsaturated double sp2 C = C and triple sp1 C C bonds, it was not so, since the bond formation is accompanied by the generation of one and two odd electrons per atom, respectively. Nevertheless, the empirical structural chemistry of ethylene and benzene, as well as a large class of their derivatives, on the one hand, and acetylene and its derivatives, on the other, is well satisfied with the concept of classical covalent bonding. However, for over two centuries, chemists have puzzled over why benzene can be so unreactive in addition reactions, given its supposedly high degree of valence unsaturation. Research over the past thirty years has shown that benzene’s behavior is not a general rule, but an exception from the long range of benzene-composed compounds, valence unsaturation of carbon atoms of which significantly alters the classical covalent bonding. The latter is clearly evident in the emergence of new chemical properties in sp2 polyaromatic hydrocarbons, sp2 nanocarbons, including fullerenes, carbon nanotubes, and graphene domains, as well as sp1 molecular compounds with polyyne chains. All of these substances exhibit radical behavior to varying degrees, and therefore, an explanation for the occurrence of this radicalization and the degree of its radicality has become a pressing issue, challenging classical covalence theory.
In the case of valence-unsaturated carbon moieties, spin symmetry, which underlies the restricted concepts of classical VB and MO, is a consequence of the strong interaction between their odd electrons. Weakening this interaction leads to spin symmetry breaking, accompanied by the arrangement of odd electrons with opposite spins in different orbitals [5]. In turn, the feature causes radicalization of the corresponding covalent bond in particular and the molecule as a whole. Bond length, which is the determining factor in this breaking, becomes the controlling parameter of its radicalization [6,7]. Quantum-chemical description of covalent bond radicalization requires realization of Löwdin’s rule: “electrons with different spins in different orbitals.” Within the framework of successfully operating VB and MO algorithms, fulfillment of this rule means abandoning the RHL and RHF approximations and replacing them with unrestricted UHL and UHF ones. The latter in the UHF version of MO theory was successfully demonstrated using the dissociation of diatomic molecules [8], revealing the molecular theory of spin covalence. Naturally, the vast pool of molecular compounds with valence-unsaturated sp2 C = C and sp1 C C bonds provides a broad platform for the UHF MO application. The first experience with this algorithm concerned fullerenes [9,10]. This was followed by carbon nanotubes [11], graphene [12], and graphpolyyne [13] domains. Further development of the spin covalence concept of carbon atoms allowed suggesting basic grounds of the spin theory of fullerenes [14,15] and graphene [16], of free-radical polymerization of vinyl monomers [17], and of their free-radical copolymerization with fullerene C60 [18].
This article discusses spn carbons, both solid-state and molecular, from a consolidated point of view based on the spin covalence of carbon atoms. The remarkable properties of the bodies allow us to uncover the full depth of the spin chemical nature of this element. The article is structured as follows. Section 2 briefly presents the empirical picture of solid-state and molecular spn carbon. The controlling factors of the spin character of spn carbon chemistry and the spin emergents of its covalent chemistry are presented in Section 3. The spin chemistry of alkane, alkene, and alkyne bonds is described in Section 4, Section 5, and Section 6, respectively. Carbon catalysts are discussed in Section 7 in light of their spin covalence. Section 8 presents posteriori reflections and concluding remarks.

2. Carbon in the Language of Covalent Bonds

The Earth’s carbon world is extremely rich and diverse. It comprises most of the planet’s mineral kingdom and all living matter. Thus, Nature, by bringing human beings into contact with carbon, immediately places them in a world of Big Data, touching upon virtually every aspect of the carbon environment: many species, many variations of each species, countless cells, a vast number of atoms and molecules. From the moment of contact with the carbon component of the world, humans have ceaselessly searched for the patterns that govern it. The entire development of natural science represents gradual steps toward understanding how this world unfolds. Discovered first patterns, then replaced by others, carefully selected bits of knowledge, and chemical, biological, physical, geological, and cosmogenic understandings of the role and place of carbon in Nature have been gradually developed. Today, the birth of a mathematical view of carbon as the foundation of the carbon world of the metaverse is underway. The atom as the basic building block and the molecule as the fundamental configuration it formed laid the foundation of these concepts.
Molecular theory gave rise to the concept of interatomic bonds, and from that moment on, the world of carbon took on new colors. As it turned out, Nature endowed the carbon atom with the unique ability to form stable bonds with virtually all chemical elements, particularly highlighting its bonds with itself, noting their distinctive three-modal nature: sp1, sp2, sp3. This trimodality concept proved not only a convenient mathematical device but also touched upon the depths of the multi-dimensional nature of the carbon world, greatly increasing the variability of its chemical, biological, physical, geological, and cosmogenic manifestations, on the one hand, and serving as a fundamental, common concept for all of these manifestations, on the other. The differences in the properties of material carbon, given the trimodality of its bonds, are also common to all manifestations, regardless of whether they are observed in space or in a living organism on Earth.
This idea of the conceptual unity of the carbon world underlies the discussion below. The subject of this discussion is digital twins, which represent molecular configurations of carbon atoms corresponding to solid forms of elemental carbon (crystals and amorphous forms) and a selected set of real-life molecular carbon. The trimodality of covalent C C bonds and its influence on the properties of digitized material objects is the main focus of this discussion. The patterns established by this approach represent a common property of the entire carbon world.

2.1. Crystalline Carbon

Solid carbon is a unique material with an internal molecular structure, which can be viewed most favorably from the perspective of sp1, sp2, and sp3 trimodality. This material carbon occupies a significant portion of the Earth’s crust [19] and is also present in small quantities in space. A large part of the material, solid carbon, is produced industrially. Figure 1 shows the currently known crystal structures of elemental carbon as one of the possible sets of their digital twins. The well-known crystalline diamond with a cubic structure (Figure 1a) opens the presentation. Each carbon atom is bonded to four nearby (symmetrically located at the tetrahedron vertices) covalent sp3 C C   bonds. An ideal crystal can be imagined as a single giant sp3 molecule [20]. Natural diamond deposits, estimated at several million carats, are widespread across the planet. Compared to this crystalline cubic carbon giant, lonsdaleite, or hexagonal diamond, is an alien from outer space and is found primarily in meteoritic debris [21,22] (Figure 1b). As with diamond, its molecular chains of atoms are formed by sp3 C C bonds.
Figure 1. Digital twins of crystalline carbon allotropes. (a) Diamond. (b) Lonsdaleite. (c) Graphite. (d) Carbyne. (e) Y-diamond. (f) α (top) and β (bottom) Grahynes. (g) γ Grahyne. (h) Graphdiyne. Images are taken from open sources.
In Figure 1c, the sp3 structure gives way to the sp2 structure of graphite, whose triples of sp2 C = C   bonds form a planar trigonal configuration [23]. Unlike the closely packed sp3 structures, graphite consists of parallel layers formed by regular hexagons of carbon atoms linked to each other by sp2 C = C bonds. As is usually accepted, atoms of adjacent layers are not covalently bound, and the layers are coupled by Van der Waals attraction. There are two modifications of graphite: α-graphite (hexagonal) and β-graphite (rhombohedral), which differ in the layer arrangement. β-graphite is not observed in pure form, as it is a metastable phase. However, in natural graphite, the rhombohedral phase content can reach 30%. Graphite is widespread in nature, with estimated reserves of 250–300 million tons.
As can be seen from the figure, diamond is a three-dimensional structural carbon modification composed of sp3 atoms. Graphite is a two-dimensional layered allotropic carbon modification formed by sp2-hybridized atoms. The third one-dimensional linear allotropic modification, corresponding to the sp1 hybridization, could not be discovered for a long time. This substance was first synthesized by Soviet chemists in the early 1960s and was named “carbyne” [24]. According to the discoverers, the most difficult thing was to determine what kind of bonds connected the carbon atoms in carbyne into a chain. These could be alternating single and triple bonds ( C C C C ) of polyyne chains, double bonds ( = C = C = C = C = ) of polyene chains, or both simultaneously. Over time, it was proven that there were no double bonds in the carbyne. This substance, consisting of polyyne chains, was named α-carbyne. According to microdiffraction data, single-crystal films of α-carbyne possess a hexagonal lattice [25,26]. Figure 1d shows a carbyne spatial model. The numerals (l–5) denote carbyne chains, the positions of which in a unit cell of the carbyne crystal in a (0001) projection are shown in the inset. It can be seen that the carbyne lattice is double-layered. Both layers consist of closely packed polyyne chains. Impurity atoms such as Fe or K intercalated between the layers presumably provide saturation of dangling bonds.
In 1968, carbyne-like carbon was found in geological rocks formed in a meteorite crater [27]. To date, approximately two tens of carbyne-like materials differing in structural parameters have been artificially synthesized and revealed in nature [28,29,30,31]. Strong chemical activity and extreme instability at ambient conditions characterize carbyne, an infinite sp1sp3 carbon chain. As a result, much less has been explored about carbyne as compared to other carbon allotropes. Although end-capping groups can be used to stabilize carbon chains, length limitations are still a barrier for production. To overcome the difficulty, a method for the bulk production of long carbyne linear chains protected by thin double-walled carbon nanotubes and composed of more than 6000 atoms has been proposed [32].
The existence of crystalline carbyne revealed a very important property concerning the covalent bonds of carbon. It had to be recognized that while stable polyyne configurations of carbon atoms linked solely by sp1 C C   bonds are impossible, a stable configuration can nevertheless be created by allowing these bonds to coexist with sp3 C C   and sp2 C = C bonds. As it turned out, in addition to carbyne, it is possible to construct regular carbon configurations involving a variety of bond types. Thus, preliminary hints at the carbon sp3sp1 3D structures (which were called yne-diamonds or Y-diamonds) can be found in early works [33,34], where the insertion of acetylenic ( C C ) or diacetylenic ( C C C C ) linkages inside the sp3 skeleton of diamond was assumed. Figure 1e presents the sp3sp1 configuration, demonstrating the structure of a virtual Y-diamond crystal [35,36]. This mixed-bond configuration is predicted to be stable, so Y-diamond crystals may be synthesized in the near future.
As can be seen from Figure 1a,e, Y-diamond is the result of a structural transformation of diamond, in which all sp3 C C   bonds are replaced by ternary sp3sp1sp3 chains. A similar transformation, but affecting all sp2 C = C   bonds of the original two-dimensional sp2 carbon structures, leads to the formation of stable α and β graphynes [37], the digital twins of which are shown in Figure 1f. It also turned out that to obtain a stable planar regular structure, it is sufficient to replace one third of the sp2 C = C   bonds of graphite with acetylenic ( C C ) or diacetylenic ( C C C C ) linkages [37,38,39]. Such a transformation in the first case leads to the regular structure of γ graphyne (see Figure 1g), and in the second case, to graphdiyne (Figure 1h). Calculations showed the stability of structures of both types, as well as other graph-n-ynes (n = 3, 4, 5, etc.). Numerous attempts to synthesize this group of substances have been successful only in relation to graphdiyne, the crystalline films of which have become the subject of careful study [40,41,42,43,44]. The conceptual circumstances explaining the reasons for the failure of graph-n-ynes synthesis with n >   2   are discussed in detail below in Section 6.
A brief look at carbon crystallography, presented above, shows that sp3 and sp2 bond configurations are favorable for the formation of stable, regular structures, supporting the existence of millions of tons of diamond and graphite deposits on the Earth and the existence of crystalline carbon in space. As for sp1 bonds, they cannot form regular structures on their own, so the latter are formed only by combining sp1 bonds with sp3 and sp2 ones.

2.2. Amorphous Carbon

The trimodality of valence electron configuration of carbon atoms forms the foundation of the unique three-mode amorphous state of carbon solid. From the fundamentals of solid-state physics, sp3, sp2, and sp1 amorphous carbons ( a C s) are different species characterized by conceptually different short-range orders, namely, groups of tetrahedrally bonded sp3-configured atoms, as well as nanoscale-size-restricted sp2 graphene domains, and sp3- sp1 carbyne chains. Figure 2 provides a basic overview of the current state of this carbon understanding.
Figure 2. Digital twins of amorphous allotropes of carbon. (a) Tetrahedral amorphous carbon t a C . (b) Q -carbon. (c) sp2 graphene-carbon. (d) sp3sp1 carbyne-carbon. Images are taken from open sources.
As in the case of crystals, a C has an internal molecular structure, the configuration of which depends on the type of C C bonds involved. Thus, tetrahedral a C ( t a C ) in Figure 2a [45,46] represents the well-known configuration of atoms linked by sp3 C C   bonds. Another tetrahedral amorphous allotrope, Q -carbon in Figure 2b [47,48,49], is a densely packed metastable phase formed by ultrafast quenching of carbon melt in a super-undercooled state. After quenching, diamond tetrahedra are randomly packed with >80% packing efficiency. Neither a C is a natural substance and constitute only a small part of the vast amorphous wealth of carbon. The central part of the latter is occupied by the sp2  a C . Recent purposeful studies [50,51,52,53,54,55] have completed the gradual change in the view of the solid as a well-known, familiar physicochemical subject, the beginning of which was laid back in 1941 [56], transferring it to the rank of a high-tech material of modern nanotechnology. We are talking about material known to humankind since the first decomposed bonfire, which left behind black soot and charcoal. Today, this applies to billions (anthracite coal)–millions (shungite carbon)–thousands (anthraxolite and blackcarbon coatings, which are present everywhere and accompany almost all minerals in nature) tons of only discovered natural deposits and hundreds of millions of tons of synthetic black carbon produced industrially. All this black carbon wealth is sp2 a C , or monoatomic solids without long-range order, the atoms of which form sp2 C = C   configured valence bonds with each other. It has a unique common basis, namely, nano-micro-scale molecular compositions of hexagonal honeycomb structures of carbon atoms (graphene domains) framed by various heteroatom necklaces composed of oxygen, hydrogen, nitrogen, sulfur, halogen, and so forth. These necklaced graphene molecules are basic structural units (BSUs), varying in size and shape, as well as differing in the necklace chemical composition depending on the history of origin and/or method of production of the black carbon, and form the first-level structure of the bodies. The discovered and experimentally confirmed graphene nature of this black gold has led to a revolutionary revision of the theory, modeling and interpretation of the experiments related to this class of solids [55].
The second-level structure of the sp2  a C s is provided with nano-thick BSUs stacks, which are confidently recorded by X-ray and neutron diffraction structural studies of sp2  a C s of all types [51]. The third-level structure of these amorphics reliably follows from the porous structure evidently observed experimentally [57,58]. It is constructed from the BSUs’ stacks, while the final compositions depend on the stacks’ lateral dimensions. When the latter is at the first nanometer level, the composition presents globules of ~10 nm in size, which corresponds to pores, the size of which is first nanometers as well. Further aggregation of globules leads to the formation of micro-nanosize agglomerates with pores of tens-to-hundreds nm. Such a structure is typical of natural a C s such as shungite carbon, anthraxolite, and anthracite, as well as black carbon coating of diamonds [59], mixed carbon-silica spherical ‘sweets’ [60], black carbon in meteorites [61,62], and none of the exclusions has been known so far. Figure 2c schematically presents the evolution of this type of amorphic structure from a single BSU to macroscopic powder. In contrast to natural bodies, synthetic sp2  a C s are characterized by a large dispersion of BSUs ranging in size from units to tens and/or hundreds of nanometers. At the low-limit end of the dispersion, the amorphic structure is similar to that of natural species described above. At the high-limit end, the BSU size does not prevent BSUs from packing in nanosize-thick stacks, while the latter are extended and further packed into a paper-like structure.
In contrast to sp3 and sp2  a C s, information on sp1  a C s is currently practically absent, which indicates great difficulties due to both the existence of polyyne chains of limited length and the complexity of their mutual packing. We touched on this problem above when describing the crystallization of polyyne chains. Since the chain end atoms are very reactive, chemical approaches tend to stabilize the chains by end groups. Different end groups have been used, ranging from hydrogen or metal atoms to larger complexes. With larger end groups, chains of up to 44 atoms have been synthesized [63]. It is assumed that the extended end groups prevent cross-linking of the chains by keeping them at a distance. Calculations show that both regular and irregular packing of carbyne units is possible. The successful implementation of the former is described in the previous section. Irregular, or amorphous, packing can be imagined as a child’s ‘hedgehog made of matches’, shown in Figure 2d. And only the future will tell how close our idea is to reality.
Concluding the above comparative analysis of the structures of solid carbon allotropes, it should be recognized that the trimodality of the covalent bonds between carbon atoms is the primary reason for their wide diversity. It is easy to imagine that similar vivid images would accompany the description of any characteristic property of carbon molecules. This, in turn, allows us to say that the type of covalent bond for each carbon atom is a determining factor in its subsequent fate and behavior within a team of surrounding atoms. This means that the analysis of these bonds becomes the cornerstone of the entire carbon universe, from its chemistry to its biology and cosmology. This fundamental problem will be further explored below within the framework of the UHF MO theory of the carbon atom covalence.

3. Lengths of C C Bonds as a Controlling Factor of the Carbon Covalent Chemistry

3.1. Spin-Radical Concept of the Carbon Atoms’ Covalence

Stretching and breaking of chemical bonds, leading to open-shell character of molecular electronic systems, present key points of the spin-radical concept of the covalence. The main statement declares that the open-shell character of both covalent carbon solids and molecules is the main mechanism responsible for the peculiar properties of the species at the microscopic level. Basically, the open-shell character is provided with either initially unpaired odd electrons, which do not participate in the formation of covalent bonds, or effectively unpaired electrons that are withdrawn from the covalent bonding, in whole or in part, due to stretching of interatomic distance. In both cases, the spacing between the electrons must exceed a critical value R c r i t   characteristic of the bonding partners of the covalent bond under consideration.
Theoretically, the bond concept has come a long way in development alongside the electron theory of chemical matter, and its development is still ongoing. Particular epochs are associated with the valence bond theory [3], molecular orbital theory [4], and density functional theory [64]. A comprehensive collection of reviews exhibiting the modern concepts of chemical bonding is presented in two-part edited collections [65,66]. These theoretical approaches have laid the foundation of quantum chemistry aimed at obtaining equilibrium multi-atomic configurations. Also noteworthy is the latest review [67], which scrupulously examines the achievements and conceptual limitations of the DFT approach for examining covalent bonds. However, a direct solution of Schrodinger’s equation does not point to the bond within a particular pair of atoms. Computationally, the bond justification consists of finding evidence in space related to the electron density distribution in the frame of either Bader’s atom-in-molecules theory [68] or some of its developments (see refs. [69,70] and references therein). Empirically, in the majority of cases, the bond between two atoms is justified by comparing the interatomic distance with one of standard bond lengths accumulated on the basis of numerous empirical structural data. In view of this interrelation, in practice, the chemical bond is mainly associated with this structural identificatory, with respect to which one can speak about ‘bond forming’, ‘bond stretching’, or ‘bond breaking’. Speaking about the length of a covalent bond, one usually addresses the data tabulated in numerous tables and presented in numerous handbooks (see, for example, refs. [71,72]). As seen from the data, bond lengths for the same pair of atoms in various molecules are rather consistent, which makes it possible to speak about standard values related to particular pairs of atoms. A standard length of 1.09 Å is attributed to the C H pair, while the lengths of 1.54 Å, 1.34 Å, and 1.20 Å are related to single, double, and triple C C bonds, respectively. Complicated as a whole, the set of available data on bond lengths and bond energies provides a comprehensive view of the equilibrium state of molecules and solids. On the background of this self-consistency, the detection of extremely long bonds, such as single sp3 C C bonds of 1.647 Å, 1.659 Å, and 1.704 Å instead of 1.54 Å [73] and sp3 C O bonds of 1.54 Å [74] and 1.622 Å [75] instead of 1.43 Å not only looks as a chemical curiosity but raises the question of the bounds of covalent bonding. Two other questions are closely related to the matter: (1) to what extent a chemical bond can be stretched and (2) at what length its breaking occurs. Empirically, this usually concerns subjectively made estimations of critical values of a possible elongation of bonds that vary widely. Thus, the width of the region of admissible values of bond lengths is significantly varied in different computer programs aimed at molecular structure imaging. As for a bond rupture, this problem is the most uncertain, and the rupture is considered a final result of continuous stretching only.
The problem of theoretical justification of the chemical bond stretching and breaking concerns the criteria according to which the considered bond is still alive or ceases to exist. Until now, two approaches have been usually exploited. The first, based on the atom-in-molecules theory [68], concerns the bond critical point within the electron density distribution over an atomic composition, evidence of which is considered as proof of the bond existence. However, as shown [75], the criterion, computationally realized, is not reliable in the case of weak coupling, due to which it cannot be used to fix the bond breaking. The second approach overcomes the difficulty by directly addressing the correlation of electrons involved in the bond [76], addressing the entanglement among any pair of orbitals. The obtained results showed that electron correlation is indeed the main determinant of stretching and breaking of chemical bonds, and the quantitative measure of the correlation may serve as a criterion for the fixation of the above processes. Effective electron correlation is accompanied by spin symmetry breaking [5], which forces the opposite-spin electrons forming the covalent bond in question to occupy different orbitals according to Löwdin’s rule, on the one hand. Chemists, on the other hand, must turn to a molecular theory of covalent bonding that takes this correlation into account. Currently, only UHF MO theory, time-tested and supported by agreement with a wealth of empirical data, can handle this task. Ideally, computational tools utilizing the concept of configuration interaction (CI) [5] form the computational basis of this theory. However, existing CI programs are still complex and ineffective for calculating large polyatomic systems. Experience shows that a successful solution to this problem is to use a program for calculating polyatomic systems using the UHF approximation [77], the algorithm of which forms the basis of CI programs of any complexity. As a thorough analysis [78] shows, the two-determinate algorithm of the UHF approximation covers the basic part of configuration interaction. Calculations performed with its help, confirmed by agreement with empirical data, constituted the main content of studies presented in monographs [14,15,16] and reviews [17,18].
Unrestricted two-determinant Hartree-Fock (UHF) formalism is quite suitable for a quantitative description of electron correlation thus providing four criteria able to characterize the extent of the event [79]: (i) misalignment of the energy of RHF ( E R ) and UHF ( E U ) solutions E R U , where E R U = E R E U ; (ii) spin expressed contamination via misalignment of squared spin S ^ 2 ; here S ^ 2 =   S ^ U 2 S ( S + 1 ) , S ^ U 2 is the UHF squared spin while S ( S   +   1 ) presents the exact value; (iii) appearance of effectively unpaired electrons of N D total number: (iv) molecular magnetism governed by exchange integral J = E S = 0 U H F E S = S max U H F S max 2 . Moreover, the HF level of the theory is quite appropriate for understanding the basic aspects of bonding [80].

3.2. Spin Emergents of Carbon Covalent Bonds

Besides UHF emergents   E R U , S ^ 2 , N D , and J , completely describing the open-shell nature of the molecular configuration under consideration, N D ( R ) graphs, dependent on the interatomic distance R , and their singularities present a perfect benchmark for a quantitative description of stretching and breaking of chemical bonds [13]. Throughout the article, the values of the above emergents were obtained using the CLUSTER-Z1 software [81,82], implementing the AM1 version of the semi-empirical UHF approach [83]. The program showed itself highly efficient concerning open-shell electronic systems such as fullerenes [14,15,84], graphene molecules [16], and stable radicals [85].
Bonds formed by two carbon atoms are the richest in content, and its general representation in the C C form covers a set of traditionally matched sp3 C C , sp2 C = C , and sp1 C C bonds. N D ( R ) graphs in Figure 3a present a general view on the C C   bond family on an example of the gradual virtual dissociation of ethane (H3CC-CCH3), ethylene (H2CC = CCH2), and propyne (H3CC CCH) molecules [13,16]. As seen in the figure, all the studied graphs are of S -like shape but significantly different. Thus, the single-bond graph is of one-step S -shape while for double and triple bonds S -like curves are evidently of two- and three-step, respectively. The number of steps evidently corresponds to the number of electron pairs involved in the relevant C C bond. Each of the graphs starts by a horizontal line corresponding to N D = 0 . Marked with large red dots, corresponds to the equilibrium length of the bonds R e q , while the right-hand bound indicates at which interatomic distance the covalent bonding is violated, thus pointing to the largest classical covalent bond length R c o v , from which the bond stops being classical and begins to act as spin-dependent. This region can be characterized by both absolute and relative width W c o v = R c o v R e q and δ W c o v = W c o w R e q and distinguishes areas where the bonds correspond to the closed-shell character of the relevant molecule’s electronic states. Superscripts s g ,   d b , and t r differentiate members of the   C C family.
Figure 3. N D ( R ) graphs of carbon covalent bonds. (a) s p 3 C C bond of ethane; s p 2 C = C bond of ethylene; s p 1 C C bond of propyne. Dotted vertical lines mark positions of R c o v d b and R c o v s g . Large red points mark positions R c o v in all the cases. (b) s p 2 C = C bonds of ethylene, benzene, and hexamethylbenzene (HMB). (c) s p 3 C C bonds of ethane (Et), HMB, and hexamethylcyclohexane (HMCH); s p 3 C H bond of ethane and s p 3 C O bond of ethylene glycol. Light blue band marks dispersion of the R c o v s g depending on the bond structure-elemental surrounding. UHF AM1 calculations.
When reaching R c o v , each of the three   C C graphs undergo a jump that indicates the beginning of the bond radicalization when stretching. The radicalization gradually proceeds while the interatomic distance increases, although quite differently for the three bonds. Thus, the radicalization of the sp3 C C bond of ethane, started at R c o v s g = 2.11   Å , is fully completed at R r a d ≤ 3 Å and two single radicals are formed. Radicalization of the sp2 C = C bond of ethylene starts at R c o v d b = 1.395   Å and is saturated at the same R r a d as for the single bond where a pair of two-fold radicals is formed. However, on the way to a completed radicalization a clearly seen kink on the N D ( R ) graph occurs. The kink critical point corresponds to N D approaching 2e and, exhibited by differentiating, is located at R k 1 d b = 2.12 Å that is well consistent with R c o v s g of the single bond. Therefore, the bond radicalization occurs in two steps, first of which is completed for a pair of π electrons by reaching N D   ≈ 2e while the second should be attributed to the separation of the remaining σ electrons until N D ≈ 4e is reached.
N D ( R ) graph of the sp1 C C bond of propyne, preserving a general S -like pattern, shows a two-kink behavior. As seen in Figure 3a, the bond radicalization starts at R c o v t r = 1.24   Å and the first kink is located in the region of N D  ≈ 2e at R k 1 t r = 1.40 Å that is consistent with R c o v d b = 1.395 Å of the double bond of ethylene. In the region of N D ≈ 4e, the second kink is observed, whose critical point at R k 2 t r = 2.10 Å is consistent with R c o v s g of the single bond of ethane. A pair of three-fold radicals at R r a d 3   Å completes the bond breaking. Therefore, a gradual stretching of the sp1 C C bond of propyne can be presented as a consequent completed radicalization of two pairs of π electrons first and then terminated by the radicalization of σ electrons, followed by the total bond breaking.
Data presented in Figure 3a allow speaking about a new aspect of chemical bonds concerning their radicalization. It should be remained that the radicalization is just a ‘chemical’ manifestation of the correlation of bond-involved valence electrons. From this viewpoint, single, double, and triple bonds are drastically different. Thus, the single bond is radicalized in the vicinity of its breaking. Derivation of the N D ( R ) graph reliably highlights R c o v s g as a clear singularity thus allowing its attribution to the fixation of the bond breaking. In the case of double bond, R c o v d b determines the parting of the π bond while R k 1 d b , which coincides with R c o v s g , fixes the bond breaking. Similarly, R c o v t r on the N D ( R ) graph marks the separation of π electrons of the first pair while R k 1 t r and R k 2 t r manifest the parting of π electrons of the second pair and the remained σ electrons, respectively, just completing the bond breaking. Therefore, according to the observed consistency of R k 1 d b of ethylene and R k 2 t r of propyne with R c o v s g of ethane, all the three values are close to each other and can be attributed to the interatomic distance at which any of the bonds of the discussed C C set can be considered as broken.
Fixation of the bond breaking allows introducing such characteristic quantities as the absolute and relative width of the radicalization region W r a d and δ W r a d , respectively, that in the case of double and triple bonds of ethylene and propyne are of the form
W r a d d b = R k 1 d b R c o v d b ;       δ W r a d d b = W r a d d b R e q d b
for sp2 C = C bond of ethylene; and
W r a d t r = R k 2 t r R c o v t r ;       δ W r a d t r = W r a d t r R e q t r
for sp1 C C bond of propyne. The corresponding sets of R e q ,   R c o v ,   R k 1 , R k 2 ,   W c o v , δ W c o v , W r a d , δ W r a d data are listed in Table 1. As seen from the table, while W c o v decreases when going from single to triple bond, W r a d inversely increases. The feature is the main reason for a drastic difference in the chemical activity of the bonds (material bodies and molecules) of different modalities.
Table 1. Characteristic interatomic distances related to selected covalent chemical bonds 1, Å.
From the above it follows that any chemical bond should be described by a set of characteristics, only one of which, namely, the equilibrium length of chemical bond R e q can be standardized. However, empirical data show that R e q is characterized with a significant dispersion indicating the dependence of the quantity on surrounding atoms. From this viewpoint, the data presented for the considered three molecules may change when going to other atomic composition. Actually, data presented in Figure 3c for single sp3 C C bonds show that the absolute values of R e q s g ,   R c o v s g ,     W c o v s g ,     δ W c o v s g (see Table 1) are different while the qualitative character of the relevant N D ( R ) graphs is conserved. Particularly, it should be noted that in polyatomic molecules the radicalization and breaking of these bonds become more abrupt thus significantly narrowing the smoothing of the region of their radicalization.
Oxides and hydrides are the most popular species of the carbon chemistry that is why sp3 C O and sp3 C H bonds deserve particular attention. The relevant N D ( R ) graphs presented in Figure 3c are related to the dissociation of single sp3 C O bond of ethylene glycol as well as sp3 C H bond of ethane. R e q s g ,     R c o v s g ,     W c o v s g ,     δ W c o v s g parameters of the bond are listed in Table 1. As seen in the figure and follows from the table, the bonds one-step behavior is similar to that of sp3 C C ones. The elongation stage δWcov constitutes ~40–50%, while the radicalization smoothing of R c o v s g is small enough. As in the case of sp3 C C bonds, one should expect a slight difference in the characteristics of sp3 C O and sp3 C H bonds depending on the atomic surroundings.
Double sp2 C = C bonds, similarly to those of ethylene, are characteristic of a large family of alkenes. However, such bonds are more often associated with benzene-based and other aromatic molecules. Their stretching is of extreme significance for a large class of sp2 nanocarbons [86]. Figure 3b presents a comparative view on the dissociation of a single sp2 C = C bond of ethylene and one of the bonds of benzene and hexamethylbenzene. The comparison reveals a common character of the relevant N D ( R ) graphs with some difference of R e q d b ,     R c o v d b ,     R k 1 d b ,     W c o v d b ,     δ W c o v d b ,     W r a d d b ,     δ W r a d d b values (see Table 1) as well as a remarkable difference in the graphs’ shape. Nevertheless, all the graphs are two-step S -like with a kink located in the region of N D ~2e. The kink critical points are well consistent with R c o v s g of the relevant single sp3 C C bonds.
At the same time, despite the general similarity between the behavior of ethylene and benzene molecules, a significant difference between them is evident. The latter concerns the values R e q d b   and R c o v d b . In the case of ethylene, R e q d b is markedly less than R c o v d b , indicating that the molecule retains its closed-shell configuration with a good margin of safety regarding possible bond elongation. In contrast, for benzene molecules, R e q d b and R c o v d b are virtually identical, so they are at the limit of stability of the closed-shell electron system. As a result, the slightest elongation, even one of their bonds, transforms the closed-shell configuration into an open-shell one with pronounced radicalization. As will be shown in Section 5.1, this is really observed in the series of polyaromatic hydrocarbons, the radicalization of which increases alongside the number of benzene rings, provoking the growth of elongated bonds.
Evidently, all the said above can be attributed to species with sp1 C     C bonds. The relevant critical point R c o v t r = R c r i t t r 1.240   Å determines the onset of the transformation of molecules involving triple bonds from closed-shell to open-shell ones.

3.3. Spin Emergents of Silicon Covalent Bonds

The current around-graphene science has represented a new milestone of activity in the discussion of similarity and/or unlikeness of different members of   C C and higher tetrels X X (X = Si, Ge, Sn) families of covalent bonds, which was a hot topic over a century [87]. Now this branch is full of suggestions concerning new prototypes of graphene, foremost of which are based on the equivalence of valence electrons of all tetrels atoms and expected hexagon patterned one-atom-thick planar structures such as silicene, germanene, and tinene-stanene. Covalent radii of tetrels make a series 0.76–0.73–0.69 Å, 1.11 Å, 1.20 Å, and 1.39 Å for carbon (sp3sp2sp1), silicon, germanium, and tin, respectively [88]. To form a reliable platform for a comparative analysis, the data presented below are related to molecules of the common structure, namely, ditetralanes X2H6, ditetrelenes X2H4, and ditetrylynes X2H2 (C2H(CH3) in the case of carbon) [89,90]. Figure 4a presents N D ( R ) graphs related to the complete sets of S i S i bonds, while Figure 4b exhibits the difference between carbon and silicon bonds [13,16,89,90]. As seen in the figure, the graphs of silicon covalent bonds behave quite similarly to those shown for carbon, whilst shifted to longer interatomic distances. The graph of disilane is one-step with clearly seen points R c o v s g . The graph of disilene demonstrates only the second part of the two-step radicalization, which is a reality for ethylene. The equilibrium interatomic distance R e q d b ≈ 2.3 Å for the latter greatly exceeds R c o v d b at 1.8 Å. Consequently, in contrast to covalently saturated ethylene, equilibrium disilene is almost two-fold radical. When proceeding with the bond elongation, the graph reveals kink positioned at R k 1 d b , well consistent with R c o v s g . Thus, equilibrium disilene with separated π electrons, continues their dissociation until parting the remaining σ electrons at R k 1 d b R c o v s g . The three-step radicalized sp1 C C bond of propyne in Figure 3a is not reproduced as sp1 S i S i bond of disilyne in Figure 4a. The equilibrium distance R e q t r ≈ 2.3 Å is positioned much over R c o v t r   thus presenting almost fourfold radical, which means that π electrons of both pairs are disunited. All parameters of the discussed silicon bonds are listed in Table 1.
Figure 4. N D ( R ) graphs of silicon covalent bonds. (a) s p 3 S i S i bond of disilane; s p 2 S i = S i bond of disilene; s p 1 S i S i bond of disilyne. Dotted vertical line marks the positions of R c o v s g . Large red points mark positions R c o v in all the cases. (b) s p 2 C = C   s p 2 S i = S i , and s p 2 S i = C bonds of ethylene, disilene, and silaethene, respectively, and s p 3 C C , and s p 3 S i S i bonds of ethane and disilane. Light blue band marks dispersion of the N D values characteristic for sp2 nanocarbons. UHF AM1 calculations.
Therefore, in contrast to stable carbonaceous materials, possessing sp2 C = C and sp1 C   C bonds, siliceous ones with the shortest sp2 S i = S i and sp1 S i   S i bonds are radicals, the chemical activity of which drastically surpasses that of carbon species. The interaction of two odd electrons, which are formed under transformation at any interatomic bond, depends on the corresponding distance R i n t that is ~1.5 times larger for S i S i distances with respect to C C ones due to larger size of the atoms. At the same time, the distance R i n t =   1.4 Å is critical for these electrons to be covalently coupled. Above a certain distance, the electrons become effectively unpaired, the larger the distance. sp2 C = C bond length of benzene just coincides with the limit that provides a complete covalent bonding of the electrons, transforming them into widely known π electrons. This brings to mind the aforementioned two-century-old complaints by chemists about the chemical inactivity of benzene, despite its evident valence unsaturation. Apparently, this is the way Nature has enabled benzene to play a particular role in establishing and proving the aromaticity concept in the framework of classical covalent chemistry as well as for introducing π electrons in organic chemistry.
Besides the discussed sp2 C = C and sp2 S i = S i bonds, one more double bond is formed involving both carbon and silicon atoms. Figure 4b presents a comparative view on N D ( R ) graphs related to the dissociation of ethylene, silaethene, disilene, as well as ethane and disilane molecules. Comparing the graphs for sp2 C = C and sp2 S i = S i bonds, a drastic difference becomes evident. In the case of ethylene, one can distinctly see that π electrons govern the molecule’s continuous dissociation when the interatomic distance changes from 1.4 Å to 2.1 Å, and then it is the turn of σ electrons until the dissociation is completed at 2.8 Å. At equilibrium, the molecule is a closed-shell one with the sp2 C = C bond of 1.326 Å in length. Oppositely, π electrons are practically unobservable under disilene dissociation since already in equilibrium they are almost fully transformed into a pair of effectively unpaired electrons ( N D = 1.78e). Therefore, disilene has no closed-shell phase at all and in the equilibrium is an open-shell one. Essentially different is the situation with the sp2 S i = C bond of silaethene. As seen in the figure, at R e q d b = 1.605 Å the molecule is just at the beginning of its open-shell status, radicalization of which constitutes N D   = 0.153e.
As can be seen from Figure 4, all multiple covalent bonds involving silicon are radicalized, the sp2 S i = C   bond to the least extent, and the sp1 S i S i bond to the greatest extent, and only the single sp3 S i S i   bond of disilane reliably binds neutral atoms. This tendency of interatomic interaction is clearly visible in modern silicon chemistry. Thus, individual disilanes and disilane components of more complex structures constitute the main content of empirical silicon and organosilicon chemistry. Disilenes turned out to be extremely chemically active, as a result of which, from time to time, it is possible to stabilize them only in the form of dimeric inclusions in other molecules [91,92]. In contrast, silaethenes are successfully synthesized and analyzed [93,94]. Empirical evidence for the observation of silicene, a silicon analogue of graphene, is a consequence of the erroneous classification of real sp3 structures of silicon on substrates as sp2-type structures (see a detailed discussion of the issue in [89,90]). Individual disilynes could not be synthesized, and the triple sp3 S i S i bond was only detected in the S i S i S i S i chain [95,96].

4. Spin Chemistry of Alkane Bonds

As follows from the analysis conducted in terms of bond lengths, alkane bonds generated by classical covalent chemistry remain faithful representatives of this chemistry, regardless of the causes and nature of their origin. Single carbon sp3 C C bonds form the basic structural framework of organic compounds. One example of their consolidated operation is the formation of cord-like backbones of organic polymers. Figure 5 demonstrates the action that occurred in the course of virtual free-radical polymerization of styrene [20,97,98].
Figure 5. Digital twins present free radical oligomerization of styrene. Small yellow and gray balls mark hydrogen and common carbon atoms, respectively. Carbon targets are marked red. Larger green balls depict nitrogen atoms. UHF AM1 calculations.
The reaction occurs in a virtual reaction solution consisting of vinyl monomers M (styrene) and free radicals R . The alkyl radical A I B N plays this role. The reaction begins with the formation of monomer radicals R M . The target atoms of these primary reactants are determined within the framework of the spin theory of radicals, briefly described in Section 3.1 and Section 3.2. In the free radical, the target is the central carbon atom C 1 , whose odd electron appears as unpaired with a partial electron number of N D A = 0.807e. In styrene, the target is the carbon atom C 2 of the CH2 unit of the vinyl group with N D A = 0.106e. The radical and monomer are bound by a covalent bond between their target atoms, which leads to the formation of monomer radical R M with an active target atom, which is the carbon atom C 3 of the CH unit of the styrene vinyl group, the chemical activity of which is N D A = 0.67e. Intermolecular junction in the R M (see image in lower left corner of the figure) is configured by two covalent bonds C 1 C 2 and C 2 = C 3 , the first of which is a standard alkane bond, while the second retains the character of an alkene one due to the unpaired electron on the C 3 atom. The formation of a dimer radical (and each subsequent member of the oligomer radical chain R M n ) occurs through the formation of a single covalent bond between the carbon atom C 3   of the CH component of the vinyl bond of the R M (or C 2 n + 1 atom of the preceding R M n 1 oligomer radical) and the CH2 carbon atom of vinyl group of a new monomer, thus building a chain of alkane bonds that makes up the supporting cord of the oligomer molecule. The configuration of this cord in the oligomer radical R M 7 is shown in the lower right corner of the figure. The cord consists of alternating CH2 and CH groups, the latter of which is suspended by a benzene ring. Each next-added monomer contributes two atoms of its vinyl group ( C 2 and C 3 in the case of the initial monomer-radical R M ) to this cord, forming an alkane bond C 1 C 2 with the preceding free radical and leaving the alkene bond C 2 = C 3 in a strained state. The addition of the next monomer to R M with the pilot atom C 3 transforms the alkene bond C 2 = C 3 into an alkane C 2 C 3 and completes the chain with two new bonds—an alkane bond C 3 C 4 and an alkene bond C 4 = C 5 . The pilot atom, C 5 , drives polymerization further, replacing the alkene bonds of the oligomers with alkane bonds, leaving only one alkene bond on the ever-elongating chain, marking the pilot carbon atom of the last monomer added. The movement of the pilot alkene bond along the chain, leaving behind only a chain of alkane bonds, is the essence of vinyl monomer polymerization.
As described above. the pilot alkene bond is tightly interconnected with alkane bond that couples new monomer with the current oligomer radical [97]. The feature is presented in Figure 6 for the case of monomer radical R M . Red broken line depicts the elongation of the sp3 C 1 C 2 bond that connects free radical and monomer in the course of the R M dissociation. The dissociation starts at the (x,y) point (1535; 1471) indicating that the junction consists of a standard sp3 C 1 C 2   bond and elongated sp2 C 2 = C 3 one. Because of the elongation over R c o v d b , the sp2 bond is radicalized, thus providing the generation of effectively unpaired electrons of the total number N D = 1925e. The latter causes the generation of the junction target atom C3 with N D A = 0.67e. The N D value is in agreement with a general law that governs a gradual radicalization of the sp2 C = C bonds presented in Figure 3a. When the elongation of the sp3 bond proceeds, its length approaches R c o v s g = 2.11 Å, while the sp2 bond gradually shortens up to R c o v d b . Similar to the dispersion of sp3 C C   bonds lengths in the vicinity of R c o v s g (see Figure 3b), R c o v d b is dispersed responding to the changing the bond surrounding. The dispersion zones for R c o v values for both bonds are presented with vertical and horizontal light gray bands, related to the sp3 and sp2 bonds, respectively. The intersection of the bands determined the area of transition state indicated on the energy graph presented in the inset of Figure 6. The graph describes the elementary reaction R M M + R discussed above and reveals the transition state occurring at the moment of cleavage of the sp3 C 1 C 2 bond that is the reaction coordinate under consideration. This moment is the transition point for this bond from classical to spin covalence. Molecular compositions of the transition state represent open-shell electron systems, so their quantum-chemical analysis requires the use of methods capable of correctly considering the spin-radical interaction of electrons. Regarding the discussed sp3 bond, the presented analysis allows us to conclude that every alkane covalent bond, classical always and everywhere, becomes spin-covalent at the moment of its destruction (or creation), which is always present in chemical reactions marking transition state location in the space of reaction coordinates.
Figure 6. The interconnection between the alkene sp2 C = C   and alkane sp3 C C   bonds, composing the intermolecular junction of the monomer radical R M . See the junction determination in Figure 5. The inset presents the energy graph E ( R ) describing the virtual dissociation of the R M . Light gray bands mark the dispersion of the R c o v s g (vertical) and R c o v d b (horizontal). Images are snapshots corresponding to structures depicted with black points. UHF AM1 calculations.

5. Spin Covalence of Alkene Bonds

Alkene bonds are present in a significant number of covalent compounds. These can range from segregated bonds, such as those found in vinyl monomers discussed above, to chains of bonds forming a closed sp2 framework, as in the case of polyaromatic hydrocarbons (PAHs) and sp2 nanocarbons, including fullerenes, carbon nanotubes, and graphene domains. The nature of the bonds determines all the characteristic properties of these substances, and this could be discussed endlessly. We will limit ourselves to those that relate to the unique spin nature of these bonds, and will primarily use the quantities N D and N D A , which determine the degree of bond radicalization, as numerical characteristics.

5.1. Aromatic Hydrocarbons

A computational experiment performed for 14 n-PAHs using a number of different CI approaches, such as UMP2, QCISD, as well as UHF and UDFT [99], showed that the species become open-shell molecules starting with naphthalene (n = 2). The spin contamination values S ^ 2 , indicating the open-shell nature of PAHs, are in good agreement with each other for the first three methods, but remain zero and indicate the closed-shell nature of these molecules in the UDFT case for all n. Being based on wave functions, the UHF approximation [77,78] is clearly well suited to describing the effects of broken spin symmetry, while the DFT formalism is less suited to considering the subtle features of the correlation of electrons with different spins, as has been repeatedly noted in the literature [67,100,101,102].
Thus, for the already mentioned set of n-PAHs, Figure 7a presents the calculated N D values obtained using the UHF algorithms and the density matrix renormalized group (DMRG) method [103]. As can be seen from the figure, both data sets are virtually identical. Moreover, the linearly increasing dependence of N D (n) on the number of benzenoid rings in the molecules perfectly explains the difficulty of experimental synthesis of long n-PAHs, among which pentacene (n = 5) is the last well-characterized polyacene. As it turns out, higher polyacenes are indeed very reactive, as a result of which PAHs with n = 6, 7, and 8 can exist either only in a modified form, when additionally introduced protective groups inhibit the high chemical activity inherent to these molecules, or in crystalline neutral matrices at very low temperatures. Molecules with n > 8 are not amenable to chemical synthesis at all.
Figure 7. (a) Total number of effectively unpaired electrons N D in polyacenes calculated by using DMRG (STO 3G) and UHF AM1 formalism. No data scaling. (b) Atomic-resolved AFM image (top) and the ACS N D A maps (bottom) of pentacene (left) and olympicene (right). (c) Digital twin (top), AFM images under the CuOx tip (middle), and ACS N D A maps (bottom) of 3,4,9,10 perylene tetracarbonyl dianhydride (left) and dicoronulene (right) (see text). UHF AM1 calculations. (d) AFM images (top and bottom) and digital twin (middle) of fullerene C60.
While empirical confirmation of the correctness of UHF LDOS distributions in open-shell molecules still faces significant difficulties, requiring refinement of existing experimental methods [104], N D A maps are reliably reproduced by scanning open-shell molecules atom by atom in non-contact atomic force microscopy (AFM) experiments. The greatest success has been achieved with microscopes with an oxygen atom at the tip of the probe needle (see [105,106,107,108,109] and references therein). Figure 7b shows AFM images of two aromatic molecules, pentacene and olympicene, consisting of benzene rings. The experiment was conducted with a gold needle with a CO molecule at its tip [105]. With the color scheme used in the experiment, brightly colored markings indicate atoms of the molecule that interact weakly with the tip. Conversely, the most shadowed atoms interact with it most strongly.
In conducting these and other AFM experiments with an atomically sharpened tip, the authors aimed to obtain atomic-resolution images of molecules. The fact that these images turned out to be uneven in brightness was unexpected and was presented as experimental evidence of differences in the interactions of the tip’s terminal oxygen atom with the atoms of the scanned molecule. The reason for this difference was not discussed until the author of the current article proposed to associate the latter with the ACS N D A maps of the corresponding molecules. The N D A maps of these molecules calculated by the author are presented at the bottom of Figure 7b,c [86]. The color scheme of the virtual images in Figure 7b is inverted with respect to the experimental one. A comparison of the empirical images and virtual maps reveals that only carbon atoms are visible experimentally in AFM experiments. As for the calculated N D A values, they are fully confirmed experimentally, correctly ranking the strong and weak interactions of the microscope tip with the molecule under study when scanning its atoms. Thus, AFM with atomic resolution is indeed a reliable method for reading ACS N D A maps.
Figure 7c shows the results using a different microscope tip configuration [109]. In this case, we are dealing with a copper tip delicately oxidized, so that an oxygen atom is located at the end of the CuOx tip. The figure presents the results for 3,4,9,10-perylene-tetracarbonyl-dianhydride adsorbed on the Ag(111) surface under Van der Waals attraction. The right side of the figure presents similar results for the dicoronulene molecule, also adsorbed on the Cu(110) surface. The brightness of carbon atoms in AFM is proportional to the interaction strength of the oxygen atom of the tip with the atoms of the molecule. The comparison of empirical images and virtual ACS N D A maps confidently confirms the earlier conclusion that atomic-resolution AFM is indeed a reliable method for reading ACS N D A maps. Completing the AFM image in Figure 7d is a pinpoint image of C60 fullerene molecules adsorbed on the Cu(111) surface and held there by Van der Waals forces [109]. The details of this image will be discussed in the next section.

5.2. Fullerenes

An analysis of the structural data for the molecule [110] showed that the diffraction pattern was consistent with the assumption that the proper digital twin of the molecule is a truncated icosahedron with point group I h symmetry, which is formed by two types of sp2 C = C   bonds, one of which, separating two hexagons, has a length of 1.398 Å (short bonds), while the other, forming pentagons, has a length of 1.455 Å (long bonds). The same pattern was confirmed by a diffraction study of the C60 crystal, which again revealed two types of bonds differing in length [111]. Based on the general concepts of C C bonds at that time, the former was associated with double sp2 C = C   carbon bonds, and the latter with single sp3 C C   bonds. Within the framework of this concept of the molecular structure, experimental data related to neutron diffraction from C60 powder [112], NMR data [113], and repeated X-ray diffraction data for a C60 crystal [114] were further explained. Numerous studies of STM images of C60 fullerene adsorbed on semiconductor surfaces [115,116] helped confirm the icosahedral (nearly spherical) shape of the molecule. The molecule is most fully represented using high-resolution non-contact AFM with an oxygen atom at the tip of the probe (CuO needle) [109] in Figure 7d. As can be seen from the figure, the molecule is indeed a truncated icosahedron with two types of interatomic bonds.
Numerous calculations of the molecule’s digital twin confirmed its icosahedral shape, characterized by two sets of bonds, but disagreed on the definition of symmetry. According to RHF and DFT calculations, the molecule’s symmetry is I h , while UHF shows C i . Recall that in the UHF formalism, the reduction in symmetry concerns spin symmetry, but it affects subtle characteristics of the geometric shape as well. In the case of the C60 fullerene, the latter concerns the length dispersion of the sp2 C = C bonds that form the molecule’s framework. Figure 8a (top) shows the bond distribution for two structures of C60 digital twins that correspond to the RHF and UHF solutions, while Figure 8a (bottom) details the distribution of these bond lengths in each of the structures [14,84,86]. As can be seen from the figure, while the average bond lengths are virtually identical for long bonds and differ slightly for short bonds, the corresponding dispersions caused by the splitting of both types of bonds into four groups differ by four and 16 times for long and short bonds, respectively. This large difference in dispersion is an adequate response of the structure to a change in the spin symmetry. As can be seen from Figure 8a, all long sp2 C = C   bonds of fullerene C60, and some of the short ones, are located above the critical value R c o v d b = 1.395 Å, so the significant number of effectively unpaired electrons N D , amounting to 9.84e, seems quite natural.
Figure 8. sp2 Fullerenes in light of the spin-radical concept. (a) Space structure in terms of covalent bonds. (b,c) Effectively unpaired electrons of C60 and C70, respectively. UHF AM1 calculations.
The fragmentation of short and long bonds into groups is expected to be reflected in their spin characteristics. As can be seen from Figure 8b (top), the ACS N D A graph over atoms of the molecule C60 also has a grouped appearance, clearly evident in the Z A ordering of the values (see the black histogram in Figure 8c (top)). A similar pattern is observed for effectively unpaired electrons of fullerene C70 with a total number N D = 14.4e. In the case of C60 and C70 molecules, both N D values constitute about 15–20% of the total number of odd electrons. As for Si60 with N D = 63.52e, not only all 60 odd π electrons but also some σ electrons are unpaired, which evidences a complete radicalization of the molecule.
In terms of the spin-radical concept, the discussed ACS N D A graphs in Figure 8b,c exhibit chemical activity of the molecules’ atoms. The Z A formatted graph of fullerene C60 manifests five groups of 12 atoms each, which are characterized by the same N D A value within the group. Each group of atoms forms six identical C2 pairs held by one of the sp2 C = C bonds. The spin densities of the atoms in any pair are equal in magnitude and opposite in sign, so that the spin density of the molecule is zero [117]. According to the ACS N D A graph, the C60 molecule consists of six identical C10 compounds formed by five pairs corresponding to the total number of groups. Distributing the atoms across six fragments according to the map shown in the figure, we obtain a 6*C10 configuration consisting of six identical naphthalene nuclei. Applying different colors to atoms with different N D A values, we obtain a multi-colored ‘chemical portrait’ of the C60 molecule in the singlet state in the UHF approximation [14,15,84,86,117] shown in Figure 8b (bottom). The same numbering concerns five groups indicated in Figure 8c (top) and five colors in Figure 8b (bottom). Accordingly, two hexagons formed by light blue atoms manifest the most active area of the molecule. Any first addition reaction with C60 starts with one of these atoms.
Z A formatted ACS N D A graph of the molecule C70 shown in Figure 8c (top) is much less contrasted in comparison with that of C60. Nevertheless, as previously, the graph points to a well-defined grouping. The D5h symmetry of the molecule in the UHF singlet state governs the molecule’s structure decomposition into three five-benzenoid fragments. Two 20-atom fragments A, one of which is shown in the middle of the figure, are formed by conjugated benzenoids and look like a five-lobe flower each. Five benzenoids mutually coupled via a single sp2 bond form a 30-atom closed rarefied chain-bracelet B. The highest N D A values are concentrated just in this area. It is clearly seen in Figure 8c (bottom), where a color chemical portrait of C70 is presented, but in terms of spin density that is fully consistent with N D A values [14,15]. Any first addition reaction on C70 starts on the chain-bracelet atom.
Figure 9 returns us to the comparison of carbon and silicon fullerenes. The theory of spin-radical interactions allows only the C60 fullerene exist, thereby defining, in agreement with empirical data, the boundaries of the region of permissible N D   per-one-bond values. This region is marked by the light-gray band in Figure 4b. The relatively small N D   values determine the status of fullerene C60 as a stable radical. The N D   corresponding to R e q d b for the sp2 S i = S i bond lies well above this region, once again confirming the impossibility of the Si60 fullerene existence. However, as Figure 4b shows, the N D   value corresponding to R e q d b of the sp2 S i = C bond falls within the region of permissible N D   values. Thus, the spin-covalent chemistry of the sp2 S i = C bonds does not hinder the formation of the (SiC)60 fullerene, which may allow it to be synthesized in the future.
Figure 9. Digital twins of carbon-silicon fullerenes. UHF AM1 calculations.

5.3. Carbon Nanotubes

From the vast ocean of experimental and virtual data on carbon nanotubes (CNTs), we select only those related to the molecular structure of CNTs, which is based on chains of C C covalent bonds. Although diverse in their physical and chemical properties, CNTs are uniform from a molecular perspective. They all represent cylinders of varying diameters and lengths, formed by twisting a monatomic honeycomb web. The benzoid rings of the web are formed by sp2 bonds with lengths ranging from 1.39 Å to 1.45 Å, and their dispersion can vary. Most bonds are longer than the critical length R c o v d b , resulting in the electron system of the tubes containing a significant N D number of effectively unpaired electrons. Available virtual data show that the N D per-one- bond values fall within the region of permissible data, indicated in Figure 4b, evidencing a stable-radical character of the species.
The UHF approach was first applied to two fragments of (4,4) defect-free and (4,4) 5–7 defect single-walled CNTs (SWCNTs) [11]. The obtained characteristic ACS N D A graphs along the tube’s atoms, manyfold supported in further studies [118], are shown in Figure 10. The graphs reliably monitor the tube atoms’ atomic chemical susceptibility as well as the tight connection of the latter with the tube structure, thus highlighting the distribution of the sp2 C = C   bond length excess over R c o v d b along the tube. The discussed graphs are related to CNT digital twins in the form of fragments of (4,4) SWCNT, equilibrium structures of whose digital twins are shown in the figure. One end of all fragments is capped, while the other is either open but hydrogen-terminated (NT1) and empty (NT2), or capped (NT3). The total number of effectively unpaired electrons N D of the tubes is concentrated around 32e. The distribution of these electrons over the tubes’ atoms forms characteristic ACS N D A graphs that are shown in the figure. As seen in Figure 10a, the tube can be divided into three regions. The first is related to the cap with adjacent atoms. The second concerns mainly the tube sidewall, while the third refers to the open end terminated by hydrogen atoms. The biggest nonuniformity of the N D A distribution is characteristic of the cap region. One should pay attention to the fact that the largest N D A values belong to atoms that form the longest bonds. As for the sidewall region, the N D A distribution is practically uniform, with the N D A value scatter not bigger than 0.5%, which is consistent with a quite uniform distribution of the bond lengths as well. The N D A graph in the end region is significantly affected by the hydrogenation. The curve with dots in the figure presents the free valence of the tube atoms, which well coincides with the ACS expressed by N D A . According to the latter, the tube cap is the most reactive part, while the tube sidewall is more passive, with ill-pronounced selectivity along the tube.
Figure 10. Digital twins of fragments of the (4,4) SWCNT and their ACS N D A graphs. (ac) are related to NT1, NT2, and NT3 species, respectively. UHF AM1 calculations.
Removing hydrogen atoms at the tube’s open end, one obtains the N D A graph of the NT2 fragment shown in Figure 10b. A tremendous contribution of the end atoms obviously dominates the graph. This is due to the fact that the sp2 C = C   bonds are replaced in the region with the sp1 C C   ones. The transformation naturally results in increasing the total number of effectively unpaired electrons N D from 32.38e to 39.59e. The injection of additional effectively unpaired electrons disturbs the N D A graph of the hydrogen-terminated tube (shown in the figure by bars) quite considerably. It is important to note that the changes occur not only in the vicinity of the open end, but also in the opposite cap end. Practically no changes occur along the tube sidewall, which seems to serve as a peculiar resonator for the electron conjugation. Addressing the chemical activity of the tube, the dominant activity of the empty-end atoms is evident. Placing the cap at the open end of the tube (NT3 fragment) makes its ACS N D A graph almost symmetrical (see Figure 10c).
The peculiarities of the discussed ACS N D A graphs are generally common for all types of CNT and allow making general conclusions concerning addition reactions to be expected [118]. The space of chemical reactivity of any SWCNT coincides with its coordinate space, while remaining different for particular structural elements. Increasing the tube length leads to a broadening of zone 2 in its ACS N D A graph without changing its amplitude. Increasing the tube diameter affects the graph’s amplitudes if it is accompanied by a change in the dispersion of bond lengths within the tube. The apex and end atoms of the tubes are sensitive to the heteroatomic state of the surrounding environment. Local additions of short-length addends (involving individual atoms, simple radicals, and so forth) to any SWCNT are the most favorable at open empty ends. Following these places in activity are end caps, defects in the tube sidewall, and the sidewall itself.

5.4. Graphene Domains

Graphene is currently one of the most actively studied objects of modern material science. Countless theoretical and experimental studies have already been performed, targeting electronic, magnetic, thermal, optical, structural, and vibrational properties. Low and homogeneous chemical reactivity of atoms throughout a graphene sheet is usually expected by the majority of scientists dealing with graphene chemistry. However, the first UHF calculations [12] showed that this is not the case, since the equilibrium length R e q d b of about half of sp2 C = C   bonds of graphene domains exceed the critical value R c o v d b ≅ 1.395 Å. The domains are significantly radicalized, which is manifested with significant values of both N D and N D A . Research-friendly rectangular digital twins of nanosize graphene domains (nanographenes) are nominated as (na,nz) NGrs following [119]. Here, na and nz match the number of benzenoid units along the armchair and zigzag edges of the domains, respectively. Similar to CNTs, ACS N D A graphs of graphene domains are quite typical, only slightly dependent on the domain’s size, while N D grows with the size.
Characteristic ACS N D A graphs for (5,5) NGrs with bare and hydrogen-terminated edges, presented in Figure 11, demonstrate a rather significant variation of the quantity over atoms. As seen in the figure, the highest N D A are characteristic of carbon atoms at the zigzag edges, while those of the armchair edges are similar to the N D A values of atoms of the domain basal plane. The latter are comparable with those of fullerenes (ca. Figure 8) and SWCNT sidewalls (Figure 10). When hydrogen terminators are removed, N D A values on both zigzag and armchair edges grow significantly, still conserving bigger values for zigzag ones. The obtained results, alongside many other known today [16,79,120], made allowance for the following conclusions concerning chemical reactivity of graphene materials. All reactions with graphene domain that is a spacious object are of topochemical nature. There is still no reliable algorithm for such reactions, although the main control element is unlikely to deviate in appearance from the well-tested form of an ACS N D A graph. For now, we have to limit ourselves to this graph of ordinary chemistry when planning the course of successive reaction steps, as in the case of fullerenes and CNTs. Based on the graphs presented in Figure 11, it can be stated that any chemical addend will first be attached to the graphene zigzag edges, both hydrogen- and other heteroatom-terminated and empty. Chemical reactivity of basal-plane atoms depends on the edge termination and cannot be strictly correlated with the activity of fullerenes and SWCNT sidewalls. The steadiness of stable radical status for the graphene domains is ensured by the state of edge atoms of the domain.
Figure 11. Digital twins of bare and hydrogen-terminated (5,5) NGrs and their ACS N D A graphs. UHF AM1 calculations.

6. Spin Covalence of Alkyne Bonds

Comparing the ACS N D A ( R ) graphs of ethylene and propyine shown in Figure 3a, one can easily conclude that molecules with alkyne bonds should be more active. In practice, the situation is more complicated. Not many substances with alkyne bond chains are known, and graphpolyines (GPYs), as related to modern graphene science, are of particular interest. The species were the object of numerous studies during the last time (see comprehensive reviews [39,121,122,123] that discuss and summarize the state-of-the-art research on the issue. Introduced in Section 2.1, these allotropes are flat one-atom-thick carbon networks, which can be constructed by replacing some = C = C = bonds in graphene by uniformly distributed polyacetylenic linkages C C C C C C (n–[–C C–]), forming GPYs, among which there are graphynes (GY, n = 1), graphdiynes (GDY, n = 2), graphtriynes (GTY, n = 3), and so forth. GPYs are largely variable structures, a particular part of which is occupied by species consisting of networks that include C6 hexagons interconnected with polyacetylenic linkages. The main impression of promising interesting properties of GPYs as well as their possible applications was provided virtually, while experimental evidence is rather scarce. However, almost all the computations were performed in closed-shell approximations without taking into account the spin covalence of alkyne bonds. To compensate for this drawback, let’s look at some basic components of GPYs from the viewpoint of UHF formalism.
As seen in Figure 12a, diphenyl-n-acetylenes (n-DPHAs, phenyl-terminated polyynes) consisting of two phenyls connected with a varying number of acetylenic linkages (ligaments below) are the basic GPY components. A set of n-DPHAs with n from 1 to 4 is shown on the left panels of the figure, while the right panels display the relevant ACS N D A maps that exhibit the presence of chemical reactivity of the molecules and disclose their distribution over the molecules’ atoms. Going from the top to the bottom, one can see how the reactivity map changes in value and space when the acetylene linkage increases. The linkage of one acetylenic unit between benzene rings causes a considerable elongation of some of the ring bonds, thus promoting a significant radicalization of the rings as presented at the right-hand panel. The total number of effectively unpaired electrons N D = 1.22e with fractional N D A values on the ring carbon atoms from 0.10e to 0.08e. Similar small radicalization of N D A = 0.06e concerns the acetylenic unit. Inclusion of one more acetylenic unit between benzene rings promotes a remarkable elongation of both triple bonds, which, in turn, results in the enhancement of their radicalization, just lifting both N D and N D A values while characteristics of benzene rings remain practically unchanged. This trend is preserved with further increase in the number of triple bonds. As seen in the figure, in the course of growth of the triple bond number, the chemical reactivity of DPHAs is increasingly concentrated on the atoms of acetylenic units, evidencing the growing elongation of the latter. This might be explained by the transformation of a quite rigid sole triple bond to a flexible chain of bonds, which readily promotes the bond elongation, with quite regular spacing of 1.217–1.225 Å within the acetylenic units and of 1.327–1.332 Å between them.
Figure 12. Equilibrium structures (left) and ACS N D A image maps (right) of graphpoyynes digital twins. (a) n diphenylacetylenes; n = 1, 2, 3, 4. The maximum value of the map intensity scale varies from 0.10e for 1-DPHA and 2-DPHA to 0.16e for 3-DPHA and 0.30e for 4-DPHA. (b) One-triangle 2-DPHA-based compositions with two-branched hexagons C6. (c) ‘Irish lace’ GDY pattern. The maximum value of the map intensity scale is 0.23e in (b) and 0.30e in (c). Figures present summarized N D A values related to hexagons C6 and ligaments. Gray and red balls mark carbon and hydrogen atoms, respectively. UHF AM1 calculations.
Figure 12a presents a great increase in the chemical activity of polyynes when acetylenic chains become longer. Apparently, the finding explains the failure in the synthesis of linear ynes with n > 11 [124]. Experimentally observed structures of polyynes with n from 2 to 11 manifested regularly distributed acetylenic units over the chain with characteristic interatomic spacing of 1.201–1.211 Å and 1.353–1.364 Å depending on the length and termination of the acetylenic chains. The data are in perfect agreement with those related to the DPHAs shown in the figure. It proved possible to overcome the high chemical activity of long polyynes only by placing them in a confining reactor [32]. The linear carbon chains were encapsulated in and protected by thin double-walled carbon nanotubes. Exceptionally long and stable chains composed of more than 6000 carbon atoms were obtained.
The considered DPHAs lay the foundation of various GPYs differing by the number of acetylene linkages between benzenoid rings. Thus, 1-DPHA, 2-DPHA, and 3-DPHA form the grounds of graphyne, graphdiyne, and graphtriyne, respectively. Independent of a concrete structure of the involved DPHA, the composition, like a six-petaled flower, lays the foundation of the structure of any GPY. Six-branched benzenoid hexagon C6 determines each of the flower centers, while another six hexagons terminate the flower petals. Each of these rings, one-branched previously, gradually becomes six-branched in the course of the GPY growth in the plane, which results in a particular triangle patterning of the GPY body consisting of triangle-closed cycles. Three hexagons form the vertices of the triangle while ligaments lie along its sides. Based on these structural grounds, it is easy to imagine a consequent formation of a regular extended structure of GDY. Thus, Figure 12 b presents one-triangle 2-DPH-based compositions. The ACS N D A map, or chemical portrait of the molecule at the right-hand panel in the figure, impressively exhibits changes in the 2-DPHA atomic reactivity caused by the triangle composition, which reflects different changes in bond lengths.
A successive ranching of benzenoid hexagons of GDY recalls braiding Irish lace, whose main motive is selected by circle in Figure 12c. The triangle fragment marked in red constitutes its main part related to the extended lace body. The knitting is obviously a multi-stage complex process, which is difficult to trace in all details. However, taking ACS N D A maps as assistants, it is possible to disclose general trends and regularities for making the following conclusions. GDY presents a large cloth with a regular flower-like print where six-branched benzenoid hexagons play the role of the main floral motif, while alkynic ligaments present thin twigs. The motive is radical, but the status of its radicalization depends on the surrounding structure. The highest radicalization is related to that one surrounded by identical six-branched benzenoid hexagons. The main motive for radicalization is concentrated on the hexagon, while each ligament is about half as reactive.
The GDY cloth as a whole is highly radicalized and, consequently, chemically reactive. The N D A values of the motive atoms are similar to those that are characteristic of carbon atoms of fullerenes, nanotubes, and the basal plane of graphene domains. Similar to the latter bodies, the N D per-one-alkyne bond falls inside the light gray band on Figure 12c, because of which GDY are stable radicals and can exist at ambient conditions, once inclined to a variety of chemical transformations. Cutting and saturation with defects will considerably enhance the body reactivity, which should be taken into account when discussing a possible control of electronic properties of GDY devices [123,124,125].

7. Carbon Catalysts in Light of Their Spin Covalence

The catalytic properties of carbon molecules are of interest to two rapidly developing branches of metal-free catalysis: organocatalysis [126,127,128,129] and carbocatalysis [130,131,132,133,134,135,136,137,138,139,140]. It should be noted that no bond-classified class of carbon molecules has attracted particular attention in organocatalysis: neither alkanes and alkenes, nor alkynes. In the literature, only a few references can be found to the involvement of alkenes [129] or alkynes [141]. Carbenes [142] have received somewhat more attention. Analysis of numerous manifestations of organocatalysis has revealed a clear correspondence between the catalytic efficiency of molecular catalysts and their acidic and alkaline properties. The experience gained in the study of catalysis on metals being transferred to organocatalysts led to the conclusion about the connection between the catalytic ability of the latter and the presence of oxygen, sulfur, nitrogen, and other heteroatoms in their molecular structures.
In contrast to organocatalysis, carbocatalysis utilizes purely carbon catalysts, which mainly are representatives of sp2 nanocarbons, including fullerenes, carbon nanotubes (CNTs), and graphene materials. The latter plays a leading role in these reactions, while the use of fullerenes and CNTs is still scarce. Graphene carbocatalysis is divided into two large groups determined by the size of the catalysts used, namely, large-area and small-area ones. Catalysis in the first group is solid-state one, the features and control of which are determined by the surface properties of the reactants participating in the reaction (see [137,143,144,145,146,147] and references therein). The second group, combined with fullerenes and CNTs, is molecular carbocatalysis, a brief analysis of which, in light of the spin properties of their sp2 C = C bonds, will be presented below. Interested primarily in the virtualization of this process, we begin our discussion by determining the structural dimensions of the catalysts and establishing the nature of their active sites. This primarily concerns graphene materials.

7.1. Graphene Carbocatalysis

The main types of molecular graphene structures are shown in Figure 13. Since sp2 graphene domains are chemically molecules with unsaturated valence bonds, the type of molecular structure is determined by the chemical state of two structurally sensitive regions of the domains—their edge atoms with dangling bonds and basal plane atoms with unsaturated valences. The bare graphene domain is extremely chemically active and does not actually exist in practice. At ambient conditions, valence saturation of the domains occurs in two stages [79]. The first concerns the domain edge atoms, while maintaining the sp2 configuration of the carbon atoms in the basal plane. Such necklaced molecules are stable radicals [85] and are widely known as the basic building units (BSUs) of all types of sp2 amorphous carbon ( a C ) [55]. Nanoscale synthetic reduced graphene oxide ( r G O ) also belongs to this group. The second stage of valence saturation affects the carbon atoms in the basal plane of the graphene domain, the sp2 configuration of which is replaced by the sp3 one [148]. At 100% valence saturation, the chemical activity of the molecule becomes zero. Graphene oxide ( G O ) belongs to this type of molecule. G O does not exist in nature. It is synthesized by the harsh oxidation of highly fragmented graphite, so that the final product is a nanoscale powder, which is then used to obtain r G O by chemical reduction.
Figure 13. Digital twins of typical graphene catalysts.
The above-mentioned acid-base concept of the active site of organocatalysts, proposed more than 30 years ago, was transferred to carbocatalysts (see details in review [149,150]). In the latter case, the concept has been somewhat corrected, emphasizing a particular role of organic molecules, as many of them, possessing acidity or basicity as well as redox activity, can catalyze reactions. The view on virtual carbocatalysis from the standpoint of the spin chemistry of graphene molecules was first proposed in [151] for a C catalysts, BSUs of which were presented with a conglomerate of graphene-oxynitrothiohydride stable radicals. The chemical activity of the BSU’s atoms is reliably determined computationally, which allows mapping the distribution of active sites in these molecular catalysts. The presented maps reliably show the BSUs’ radicalization provided with carbon atoms only, the non-terminated edge part of which presents a set of active sites. Spin mapping of carbocatalysts’ active sites was suggested as the first step towards the spin carbocatalysis of the species.
Figure 14 presents a comparative view of the radical behavior of the studied a C system, exemplified by ‘chemical portraits’ of the relevant digital twins. Each of the exhibited molecule heads has a set of digital twins suggested for the studied amorphics [55]. The ACS N D A map of the parent (5,5) NGr domain accompanied by the Z A formatted ACS N D A graph is shown in Figure 14a. Bright spots on the map indicate sites of the most chemical activity. Quantitative presentation of this activity is shown by the ACS N D A graph nearby. As seen in the figure, large N D A values of 0.9 ÷ 1.3e distinguish 22 edge atoms while values 0.3e belong to basal-plane atoms.
Figure 14. Spin character of digital twins of graphene catalysts. (a) Parent graphene domain C66. Graphene oxyhydrides C66O4H6, C66O5H12, and C66O4H3 from right to left on (b,c) and from top to bottom on (d), respectively. Light gray, black, and red balls depict carbon, hydrogen, and oxygen atoms, respectively. UHF AM1 calculations.
This characteristic feature of the bare graphene molecule is generally preserved for all necklaced graphene molecules as well, while it is evidently disturbed. As visible in Figure 14b,c,d, the inclusion of hydrogen and oxygen into the parent domain circumference is expected to inhibit the activity of the edge carbon atoms, directly involved in the new bonding. At the same time, the figures show enhancement of the activity of basal-plane atoms. The feature clearly demonstrates a peculiar collective character of chemical events occurring with graphene molecules [85]. The molecular chemical susceptibility N D   of the parent domain C66 (33.49e) considerably reduces in all the necklaced molecules and constitutes 23.65e (C66O4H6), 20.49e (C66O5H12), and 29.66e (C66O4H3). As is visible in the figures, each decoration act causes remarkable changes in the ACS N D A graphs, thus revealing the redistribution of the bonds in the whole molecule. Despite the effect in each case being expectedly individual, the general pattern of the ACS N D A graph is conserved. As for functional groups involving heteroatoms, a dominant role of which in carbocatalysis has been largely discussed until now, as seen in the figure, they completely lose their activity after attaching the carbon core and are not capable of further leading any chemical reaction, while adjacent ‘empty’ carbon atoms are ready to play the role.
According to one of the most reputable experts in the field, “catalytic applications of carbon materials are as old as the discipline of physical chemistry, and probably even older” [152]. In fact, a C s materials such as activated carbons and carbon blacks have been used for ages in heterogeneous catalysis as either catalysts or catalyst supports. The first documentation of the issue was done about a hundred years ago in a report about the aerobic oxidation of oxalic acid occurring on the surface of charcoal [153]. The latest achievements of this biocarbon catalyst can be found in reviews [130,154]. By the end of the nineties, research in the area of a C catalysis was a well-defined field of material science, whose further development is reflected in a large number of publications, thoroughly reviewed in a set of reviews and monographs [131,132,133,135,136,137,138,139,155,156].
In addition to serving as catalysts, small-area necklaced graphene’s BSUs of sp2  a C s provide a protective function similar to that of the large-area ones [145,146]. This is a reason for the carbon coating that accompanies a great number of natural minerals. In the case of the dominant presence of carbon, say, of natural deposits of shungite, the carbon coating is transferred into encapsulating nanosize carbon sacks, whose skin is constructed from shungite’s BSUs while the interior is filled with ideally crystalline quartz [60,157,158]. The average size of the quartz particle constitutes (80   ± 2) nm, which is well correlated with the size of a sphere, constructed with densely packed BSUs of shungite of ( 2.5 × 2) nm2 in size [55]. As occurred, sp2-carbon sacks were proposed for and realized in biotechnology as well [159], allowing us to suspect that the presence of the nanosize graphene’s traces in the COVID vaccines [160,161] may be explained by the necessity to elongate the mRNA time of life encapsulating the latter in the carbon sacks.

7.2. Fullerene Carbocatalysis

The influence of the presence of fullerene, primarily of fullerene C60, on processes in reaction solutions is well known. It is enough to recall the effects it causes in the free-radical polymerization of vinyl monomers [17,18]. As for catalytic reactions involving fullerene, the author knows of only two: the oligomerization of terpenes [162] and the polymerization of styrene [18,20,98]. In the first case, the catalytic behavior of fullerene was suspected, while in the second, it has been convincingly proven. For a detailed description, we recall that catalysis has always been and remains the most difficult part of synthetic chemistry and is determined by a large number of thermodynamic and kinetic factors. In turn, the thermodynamics and kinetics of any elementary reaction between a pair of reactants are described by a characteristic E ( R ) graph [163,164], the main parameters of which are shown in the inset of Figure 6. The enthalpy of the reaction, or the coupling energy between its participants H = E c p l , determines whether the reaction will be energetically favorable. The height of the energy barrier E b a r = E a a determines the reaction rate k r c . These two quantities are the main numerical descriptors of the reaction, and it is with them that the catalyst must work when the reaction is difficult or too slow. Obviously, the reaction is favored by E c p l , large in absolute value and negative in sign. If the thermodynamic descriptor of the reaction under consideration does not meet this requirement, the catalyst takes over the initial stage of the reaction, forming a pair with one of the participants with a good descriptor E c p l . A typical example is the free radical polymerization of vinyl monomers, in which free radicals act as effective catalysts of the first step of the reaction (see a detailed description in [20,97]). In turn, the height of the energy barrier E b a r in the case of participants from covalent chemistry depends on the energy gap E g a p = I D ε A , where I D and ε A are the ionization potential and the electron affinity energy of the donor and acceptor participants in the reaction, respectively [165], so that a decrease in I D or an increase in ε A is accompanied by a decrease in the value of E b a r and a corresponding increase in the kinetic descriptor k r c . This circumstance is one of the main ones for metal catalysts characterized by low I . A typical example is the kinetically hindered dimerization of fullerene C60 [166] and its monoderivatives [18], which becomes practically barrier-free in an electric field [166] or upon the addition of butyllithium to C60 [18].
A virtual quantum-chemical consideration of the thermodynamic and kinetic descriptors E c p l and E b a r of elementary reactions in a reaction solution containing styrene, the free radical A I B N , and fullerene C60 showed that the fastest reaction is the formation of the monomer-radical F M , in which fullerene C60 plays the role of the free radical, provided that the monomer is added to it through a single-bonded intermolecular contact [18,98] as shown in Figure 15a. As can be seen from the figure, F M confidently leads polymerization of styrene, the first members of which are shown in Figure 15b. Additionally, the formed oligomer-radical branches readily attach to the remaining free portions of the carbon frameworks of the fullerenyls generated during the reaction, forming star-shaped structures of the final polymerization products, represented in Figure 15c as an intermediate star F S t 6 1 R A S t 6 1 . The resulting virtual picture is confirmed by a detailed analysis of the empirical data.
Figure 15. Digital twins of the virtual polymerization of styrene catalyzed with fullerene C60. (a) Reaction participants. (b) F M n oligomers for n from 1 to 7. (c) Two-branch element from a star-branch polymer product. UHF AM1 calculations.
Following the path taken to establish the catalytic activity of fullerene, let us return to the oligomerization of α- and β -pinenes in the presence of fullerene C60 and gaseous oxygen [162]. Thus, the reaction solution of interest contains a pinene, C60 fullerene, and degassed water. As follows from the experiment, pinene oligomerization is not observed; the monomer and fullerene retain the properties of the original molecules, indicating the absence of a productive interaction between them. The situation changes after passing a stream of oxygen through this solution. The transparent, free-flowing water becomes viscous. Its color, caused by fullerene [167], changes noticeably, indicating the formation of fullerosils. Fast atom bombardment mass spectrometric analysis reveals the presence of terpene dimers, trimers, and even traces of tetramers, which naturally explains the occurrence of the water viscosity, as well as fullerenes of the compositions C60O, C60O2, and C60O3. Since separately pinene and fullerene dissolved in degassed water do not lead to similar changes, the conclusion follows that these changes are due to the interaction of the components of the pinene-fullerene-oxygen triad. What happens to this triad? To answer this question, it is necessary to consider a set of elementary reactions, similar to what was done in the case of vinyl polymerization [20,98]. However, even without performing calculations, a certain prediction based on the experience of the styrene polymerization discussed above can be made.
As follows from structure measurements [168], the particularly active sites of α - and β -pinene molecules are connected via sp2 C = C   bond of their vinyl groups of 1.34 Å in length. This value is much lower than R c o v d b , so that odd electrons of both carbon atoms are completely paired, as a result of which N D A on both atoms is zero. Since the remaining carbon atoms are linked by alkane bonds and there are no other types of heteroatoms, the original pinene molecule is chemically inactive and its oligomerization, as in the case of benzene molecules [16], chapter 2, should be difficult. The same can be said about the oxidation of the molecule. In contrast, the oxidation of fullerene C60 and the formation of the aforementioned fullerosils are quite expected [14,15]. Moreover, each new added oxygen atom breaks one of the sp2 C = C   bond leaving the paired carbon atom with high N D A value as a target for the next addition. If pinene is this addend, only one-bond connection between fullerene and one of its vinyl group carbons is possible which leads to generation of monomer radical F M analogous to that of styrene one discussed above. The resulting radical F M ensures the oligomerization of pinene on the fullerene body in the form of fullerosil C60Mn. The bulkiness of the terpene molecule and the resulting steric hindrances evidently prevent the formation of long oligomers. Room temperature of the solution leads to the splitting off of the resulting oligomers into the solution. Virtualization of this process is entirely feasible, just like any other involving a monomer with an alkene bond, thus opening the way to virtual fullerene carbocatalysis.

8. Aposteriori Reflections and Conclusive Remarks

The C C bond type depicts the carbon family in which carbon-containing substances are born. Odd electrons, generated at either formation or rupture of the bonds, and spin-radical interaction between them are the main contributors to the treasure trove of special properties of these substances. This is how the credo of carbon covalent chemistry can be summarized today. Its first part reflects the trimodality of the C C bonds as a set of sp3 C C , sp2 C = C , and sp1 C C ones, while the second refers to the peculiarities of the weak electron interaction, revealing its spin nature and transforming the classical spin-symmetric covalent chemistry of carbon into a spin-asymmetric covalent one. The degree of importance of the weak interaction varies for each of the three bond types, but in all cases is determined by the bonds’ length. This article represents the first review of existing results in carbon chemistry, considered from the perspective of the spin nature of C C bonds. Without rehashing the content of the article, we will formulate its main conclusions in the bond-length language.
sp3 C C  bonds, known as single and alkane bonds. The life of these bonds occurs in the covalent regime, in the absence of odd electrons and the associated spin effects, which manifest themselves only at the moment of their rupture. Using the example of the ethane molecule, the life cycle of its lone sp3 C C bond lasts in the region of length W c o v s g = 0.607 Å that begins at R e q s g   = 1.503 Å, and ends when the bond length l C C reaches R c o v s g = 2.110 Å, at which the bond starts to radicalize sharply and then goes to full rupture. As we can see, W c o v s g reveals a fairly wide range of possible bond elongation, while maintaining its spinless existence. After the bond rupture, two free radicals emerge with the summarized number of effectively unpaired electrons N D equal to 2. The equilibrium R e q s g and critical R c o v s g within 2–3% retain the given values in almost all cases of observing these bonds in molecules not only carbonaceous, but also containing various heteroatoms. The values of R e q s g are confirmed by numerous structural data. As for R c o v s g , spin covalent chemistry of carbon assigns it the place of the reaction coordinate localizing the transition state in reactions caused by either formation or rupture of this bond.
sp2 C = C  bonds are known as double, alkene, and aromatic. The life cycle of the lone bond of ethylene within the limits of its length W c o v d b = 0.062 Å from R e q d b = 1.326 Å to R c o v d b = 1.388 Å occurs in classical spinless regime, when odd electrons are tightly bound providing the π electron contribution into the bond additionally to the σ one. When the bond length l C = C exceeds R c o v d b , the spin covalence begins to work stimulating at first radicalization and breaking the π constituent of the bond reaching N D   = 2e by R k 1 d b = 2.140 Å and accompanying further elongation of the bond by radicalization of its σ component up to complete bond rupture and growth of the number of effectively unpaired electrons N D to 4. The sp2 C = C bond behavior above R k 1 d b = 2.140 Å is similar to that of the sp3 C C one above R c o v s g = 2.110 Å.
W c o v d b is the main spin-marker of each sp2 C = C bond. The value may be small and big, as well as what is most important, positive, and negative. If it is positive, the bond is of classical spinless format, and molecular compositions on this basis are spin-symmetric and non-radical. Therewith, the small marker value does not change the classical molecule behavior as it is in the borderline case of benzene, for which W c o v d b 0. However, already in the case of naphthalene, we encounter a situation where the carbon framework of the molecule is formed by bonds of two types: short and long, with W c o v d b   0 for the former and W c o v d b   0 for the latter. Thus, classical and spin covalence begin to compete, and the final result depends on the number of both bonds. The situation becomes sharp since ‘the safety interval’ W c o v d b is not very large, making up only 10% of that one for alkane bonds, thus not presenting serious obstacles to the flow of alkene bonds from the group of short bonds to the group of long bonds and vice versa. In the PAH polyacene series, as the number of benzene rings increases, the number of long bonds increases faster than short ones, which correlates with the increasing radicality of the molecules, to the point where their synthesis at ambient conditions becomes impossible. We encounter a similar situation in the case of sp2 nanocarbons–fullerenes, carbon nanotubes, and graphene domains. Clearly, the ratio of the numbers of negative (long bonds) and positive (or short bonds) determines the stable-radical status of these molecules. It appears that this ratio cannot be greater than one. Actually, a close-to-one ratio is characteristic of stable PAHs and mentioned sp2 nanocarbons. However, a more exact answer to this question requires further research.
The case of negative W c o v d b markers for all double bonds reveal highly reactive sp2 radical species. Molecular sp2 carbon of this type, neither virtual nor real, has not been known. In contrast, it is a typical case for virtual sp2 silicon. Even for lone sp2 S i = S i bond of disilene, W c o v d b = 0.72 Å. This value is preserved with accepted accuracy in large molecules such as aromatic hydrosilicons similar to polyacenes and sp2 nanosilicons in the form of fullerenes, tubes, and one-atom thick domains, leaving no hope for the synthesis of the species in reality. However, there are still quite a few researchers who do not accept this verdict of spin covalent chemistry of silicon and continue to discuss, in particular, the properties of silicene as a real object analogous to graphene.
Carbon fullerenes, nanotubes, and necklaced graphene domains are stable radicals, properties of which are subordinated to the spin theory of radicals. Thus, they are susceptible to chemical modification in various ways, in particular, to various derivatizations. For closed structures, such as frameworks of these substances, this property may lead to the return of spin-covalent sp2 C = C bonds into a classical spinless sp3 C C format. The fact is that any addition act with respect to a framework atom causes an inevitable sp2 sp3 transformation of valence electrons, hybridization of the latter. This rearrangement is accompanied by a change in the spatial structure of the framework. Thus, the flat trigonal packing of C3 triad atoms connected with sp2 C = C bonds is transformed into a three-dimensional tetrahedral packing of the C4 tetrahedron atoms connected with sp3 C C bonds. In the case of chemical modification of sp2 nanocarbons in full, this leads to the replacement of flat benzenoid basic units with their cyclohexanoid analogs. As a result, the chemical action is accompanied by physical restructuring, causing significant mechanical stress since the sp2 sp3 rearrangement of the atomic system, requires an increase in space. Truncated icosahedron of C60 fullerene, cylindrical packings of carbon nanotubes, or graphene membrane domains, resist this stress, which causes shortening of some of the remaining chemically unmodified sp2 C = C bonds, thus transforming their negative W c o v d b markers into positive ones, which was discussed above. This leads to removing the radicalization of the corresponding sp2 bonds, zeroing N D A and stopping chemical reactions in which these bonds are involved. This effect, exceptionally important for modern fullerenics and graphenics, was discovered during virtual fluorination [14,169] and hydrogenation [14,170] of fullerene C60, as well as hydrogenation of the graphene domain [16,171]. However, it was not taken into account for a long time until researchers encountered the paradoxical fact of a full identity of the characteristic Raman spectra of G O and r G O presented in Figure 16. Virtual stepwise oxidation of the graphene domain [148] revealed the impossibility of its oxidation in full due to a significant shortening of approximately 20% of the sp2 C2 pairs in the basal plane of original graphene domains to 1.35 Å, which is significantly less than the critical value R c o v d b . The percentage is fully sufficient to explain the presence of 20–10% unoxidized carbons in the sample array, which has been repeatedly established in practice (see reviews [172,173,174]. This finding of shortened sp2 C = C bonds made it possible to explain the presence in the Raman spectrum of molecular G O of the G band of fully symmetrical vibrations of sp2 C = C bonds next to the D band, which is caused by the vibrations of the same type but related to basic massive of sp3 C C bonds. In turn, the presence of the D band in the Raman spectrum of r G O raised a similar question, while the presence of G was absolutely natural. The answer concerns the sp2 sp3 transformation again. As shown [53], generally,   r G O consists of multilayer stacks of BSUs presented with nanosize necklaced graphene domains [55]. Nanoscopic buckling of the latter forces some atoms of adjacent layers generate the fourth C C bond, which is an elongated sp3 C C one. The latter is supported with large enough ‘safety interval’ W c o v s g , thus transforming the entire set of sp2 bonds of these atoms into sp3 ones thus ensuring D band emergence. The intensity and shape of this band allow to estimate the number of these domains in the BSU stack and the transverse size of the domains. The discussed characteristic D-G doublet pattern of the Raman spectrum is widely used in practice as the main analytical evidence of the graphene nature of the material used, while not being able to separate sp3  O G and sp2  r G O .
Figure 16. Raman spectra of graphene oxide and reduced graphene oxide.
sp1 C C  bonds, known as triple or alkyne bonds. The life cycle of acetylene lone bond in spinless classical format is limited with very narrow region W c o v t r = 0.043 Å from R c o v t r = 1.240 Å to R e q t r = 1.197 Å. The small marker value indicates borderline behavior of the bond that may change under its small elongation. The feature is well seen in Figure 12a where two benzene rings of phenyls are coupled with acetylenic chains of different length [13]. Let us remember that sp2 bonds of the rings are of the borderline type as well. As seen in the figure, the combination of benzene rings and acetylenic chains is expected to violate the ingredient bonds’ structure, revealing elongation of the latter. The presence of one acetylenic unit between rings in 1-DPHA causes the emergence of effectively unpaired electrons of total number ND = 1.22e and of fractional NDA values on the ring carbon atoms from 0.10e to 0.08e and 0.06e concerning the acetylenic unit. Inclusion of one more unit between benzene rings promotes a remarkable elongation of both triple bonds, which, in turn, results in the enhancement of their radicalization, just lifting both ND and NDA values while characteristics of benzene rings remain practically unchanged. This trend is preserved with further increase in the number of triple bonds. The borderline character of sp1 C C bonds and the ease of their transformation into spin covalent ones are a serious obstacle to the existence of stable chemically unreactive sp1 molecules, which naturally explains a comparatively sparse population of this molecular world.
The discussion, presented in this review in the language of valence bonds, is a discussion of the essence of covalent chemistry. This language was formed during the development and maturation of classical spinless covalent chemistry over a long historical period. Spin covalent chemistry has emerged from the vast experience of its predecessor and retains its language, imbuing it with new meanings and content. A significant advantage of the new scientific concept is the spin theory of electron-electron interactions, with particular emphasis on the interaction’s weakness under certain circumstances. This theory utilizes a well-developed mathematical apparatus, allowing for the construction of transparent algorithms describing the behavior of atoms in molecules and facilitating the widespread digitalization of individual chemical processes and the construction of their virtual worlds [175].
The review mentions the first results of virtual fullerenics, virtual graphenics, virtual polymerization of vinyl monomers, virtual graphene, and fullerene carbocatalysis. But the main result of spin covalent chemistry is the obtained convincing proof of the uniqueness of the carbon atom as the only pretender on the king throne of covalent chemistry, while the closest contenders from the tetrel family—silicon, germanium, and tin—are deprived of this right according to the law of spin covalent chemistry due to the deprivation of their possibility of material embodiment. As for the spin covalent chemistry of carbon, it is taking its first steps, but even these few successes open up broad horizons for a new vision of processes controlled by spin-radical electronic interactions, such as chemical modification or derivatization of any complexity, polymerization, and catalysis of molecular compounds whose electronic properties have a spin aroma.

Funding

This research did not receive any external funding.

Data Availability Statement

The original contributions presented in this study are included in the article. Further inquiries can be directed to the corresponding author.

Acknowledgments

This paper has been supported by the RUDN University Strategic Academic Leadership Program.

Conflicts of Interest

The author declares no conflict of interest.

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