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Non-Coding RNA, Volume 3, Issue 1

2017 March - 15 articles

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Articles (15)

  • Review
  • Open Access
9 Citations
5,858 Views
8 Pages

Short Interspersed Element (SINE) retrotransposons are one of the most abundant DNA repeat elements in the human genome. They have been found to impact the expression of protein-coding genes, but the possible roles in cell physiology of their noncodi...

  • Article
  • Open Access
2 Citations
5,221 Views
10 Pages

microRNA (miRNA) are short endogenous non-coding RNA that play a crucial role in post-transcriptional gene regulation and have been implicated in the initiation and progression of 160+ human diseases. Excellent analytical methods have been developed...

  • Review
  • Open Access
35 Citations
7,074 Views
8 Pages

Long Non-Coding RNAs Regulating Immunity in Insects

  • Valluri Satyavathi,
  • Rupam Ghosh and
  • Srividya Subramanian

Recent advances in modern technology have led to the understanding that not all genetic information is coded into protein and that the genomes of each and every organism including insects produce non-coding RNAs that can control different biological...

  • Article
  • Open Access
27 Citations
6,164 Views
15 Pages

MicroRNA Expression in Bovine Cumulus Cells in Relation to Oocyte Quality

  • Karen Uhde,
  • Helena T. A. Van Tol,
  • Tom A. E. Stout and
  • Bernard A. J. Roelen

Cumulus cells play an essential role during oocyte maturation and the acquisition of fertilizability and developmental competence. Micro(mi)RNAs can post-transcriptionally regulate mRNA expression, and we hypothesized that miRNA profiles in cumulus c...

  • Article
  • Open Access
14 Citations
6,329 Views
13 Pages

PlantRNA_Sniffer: A SVM-Based Workflow to Predict Long Intergenic Non-Coding RNAs in Plants

  • Lucas Maciel Vieira,
  • Clicia Grativol,
  • Flavia Thiebaut,
  • Thais G. Carvalho,
  • Pablo R. Hardoim,
  • Adriana Hemerly,
  • Sergio Lifschitz,
  • Paulo Cavalcanti Gomes Ferreira and
  • Maria Emilia M. T. Walter

Non-coding RNAs (ncRNAs) constitute an important set of transcripts produced in the cells of organisms. Among them, there is a large amount of a particular class of long ncRNAs that are difficult to predict, the so-called long intergenic ncRNAs (linc...

  • Review
  • Open Access
132 Citations
12,597 Views
23 Pages

23 February 2017

Extracellular vesicles (EVs) are nanosized vesicles secreted from virtually all cell types and are thought to transport proteins, lipids and nucleic acids including non-coding RNAs (ncRNAs) between cells. Since, ncRNAs are central to transcriptional...

  • Review
  • Open Access
152 Citations
14,810 Views
17 Pages

RNA Biomarkers: Frontier of Precision Medicine for Cancer

  • Xiaochen Xi,
  • Tianxiao Li,
  • Yiming Huang,
  • Jiahui Sun,
  • Yumin Zhu,
  • Yang Yang and
  • Zhi John Lu

As an essential part of central dogma, RNA delivers genetic and regulatory information and reflects cellular states. Based on high‐throughput sequencing technologies, cumulating data show that various RNA molecules are able to serve as biomarkers for...

  • Article
  • Open Access
47 Citations
10,780 Views
15 Pages

CirComPara: A Multi‐Method Comparative Bioinformatics Pipeline to Detect and Study circRNAs from RNA‐seq Data

  • Enrico Gaffo,
  • Annagiulia Bonizzato,
  • Geertruy Te Kronnie and
  • Stefania Bortoluzzi

Circular RNAs (circRNAs) are generated by backsplicing of immature RNA forming covalently closed loops of intron/exon RNA molecules. Pervasiveness, evolutionary conservation, massive and regulated expression, and posttranscriptional regulator...

  • Article
  • Open Access
3 Citations
6,811 Views
11 Pages

oncoNcRNA: A Web Portal for Exploring the Non-Coding RNAs with Oncogenic Potentials in Human Cancers

  • Ze-Lin Wang,
  • Xiao-Qin Zhang,
  • Hui Zhou,
  • Jian-Hua Yang and
  • Liang-Hu Qu

Non-coding RNAs (ncRNAs) have been shown to contribute to tumorigenesis and progression. However, the functions of the majority of ncRNAs remain unclear. Through integrating published large-scale somatic copy number alterations (SCNAs) data from vari...

  • Review
  • Open Access
18 Citations
8,135 Views
7 Pages

A Brief Review of RNA-Protein Interaction Database Resources

  • Ying Yi,
  • Yue Zhao,
  • Yan Huang and
  • Dong Wang

RNA-protein interactions play critical roles in various biological processes. By collecting and analyzing the RNA-protein interactions and binding sites from experiments and predictions, RNA-protein interaction databases have become an essential reso...

  • Article
  • Open Access
23 Citations
7,097 Views
14 Pages

Insights into the Function of Long Noncoding RNAs in Sepsis Revealed by Gene Co-Expression Network Analysis

  • Diogo Vieira da Silva Pellegrina,
  • Patricia Severino,
  • Hermes Vieira Barbeiro,
  • Heraldo Possolo De Souza,
  • Marcel Cerqueira César Machado,
  • Fabiano Pinheiro-da-Silva and
  • Eduardo Moraes Reis

Sepsis is a major cause of death and its incidence and mortality increase exponentially with age. Most gene expression studies in sepsis have focused in protein-coding genes and the expression patterns, and potential roles of long noncoding RNAs (lnc...

  • Article
  • Open Access
1 Citations
6,517 Views
9 Pages

Evolution of Fungal U3 snoRNAs: Structural Variation and Introns

  • Sebastian Canzler,
  • Peter F. Stadler and
  • Jana Hertel

The U3 small nucleolar RNA (snoRNA) is an essential player in the initial steps of ribosomal RNA biogenesis which is ubiquitously present in Eukarya. It is exceptional among the small nucleolar RNAs in its size, the presence of multiple conserved seq...

  • Review
  • Open Access
23 Citations
7,824 Views
12 Pages

Computational Approaches to tRNA-Derived Small RNAs

  • Wei-Lin Xu,
  • Ye Yang,
  • Yi-Dan Wang,
  • Liang-Hu Qu and
  • Ling-Ling Zheng

tRNA-derived small RNAs (tDRs) are a group of small, non-coding RNAs derived from transfer RNAs (tRNAs). They can be classified as tRNA halves and tRNA-derived small RNA fragments (tRFs). Accumulating experimental evidence suggests their functional r...

  • Review
  • Open Access
11 Citations
5,229 Views
6 Pages

RNA modifications are involved in a broad spectrum of biological and physiological processes. To reveal the functions of RNA modifications, it is important to accurately predict their positions. Although high-throughput experimental techniques have b...

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Non-Coding RNA - ISSN 2311-553X