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Non-Coding RNANon-Coding RNA
  • Review
  • Open Access

6 April 2026

45 Pages

Neuropathic Pain: Mapping the miRNA Landscape

Facultad de Educación, Universidad Alfonso X El Sabio (UAX), Avenida de la Universidad, 1, Villanueva de la Cañada, 28691 Madrid, Spain

Abstract

Neuropathic pain represents a complex, prolonged pain state arising from lesions within the somatosensory nervous system. Despite significant advances in elucidating its pathophysiology, current therapeutic approaches remain largely symptomatic and frequently inadequate. MicroRNAs, a class of small non-coding RNAs that regulate gene expression post-transcriptionally, have recently emerged as critical modulators of neuronal excitability, neuroinflammation, and synaptic plasticity, which are crucial processes in the development and maintenance of neuropathic pain. This review summarizes the current evidence linking specific miRNAs to the onset and maintenance of neuropathic pain, with an emphasis on their roles in peripheral and central sensitization. The potential of miRNA-based biomarkers for diagnosis and prognostic evaluation is also highlighted. A thorough understanding of the complex miRNA regulatory networks underlying neuropathic pain could facilitate the development of novel, mechanism-based therapies and ultimately improve clinical outcomes.

1. Introduction

According to the International Association for the Study of Pain (IASP), pain is defined as an “unpleasant sensory and emotional experience associated with, or resembling that associated with, actual or potential tissue damage” [1,2]. Pain can be classified into distinct subtypes based on a range of characteristics, including its underlying origin [3]. Nociceptive pain arises from the activation of nociceptors due to actual or potential damage to non-neural tissues [4]. Nociplastic pain is characterized by altered nociceptive processing in the absence of clear evidence for tissue damage, often resulting from pathological lesions within the somatosensory system [5]. Neuropathic pain, in contrast, is attributable to a definitive disease or lesion affecting the somatosensory nervous system.
Neuropathic pain may result from direct injury to components of the nervous system [6]. Clinically, patients report numerous distinctive sensory phenomena, including burning sensations, cold or electric-like dysesthesias, tingling, paresthesia, numbness, and increased somatosensory sensitivity [7]. These manifestations may be accompanied by allodynia and hyperalgesia [8]. The pathophysiology of neuropathic pain involves complex alterations in the peripheral nervous system (PNS) and central nervous system (CNS) [9,10,11]. Peripheral sensitization encompasses hyperexcitability of damaged nerve fibers, increased spontaneous neuronal activity, and heightened responsiveness to several stimuli [9,10]. Central sensitization is characterized by amplification of nociceptive signal transmission and processing within the CNS structures, culminating in enhanced pain perception [9,11].
Neuropathic pain may arise as a secondary consequence of many underlying conditions, like diabetic peripheral neuropathy (DPN), chemotherapy-induced peripheral neuropathy (CIPN), spinal cord injury, postherpetic neuralgia, trigeminal neuralgia, multiple sclerosis, and HIV-associated neuropathy [6,7]. Reported prevalence rates of neuropathic pain have varied substantially across epidemiological studies, largely due to methodological heterogeneity in assessment approaches and population characteristics. Nevertheless, recent large-scale studies provide more robust estimates. For instance, analysis of the UK Biobank cohort estimated the prevalence of neuropathic pain at approximately 9.2% [12]. Additional population-based evidence studies suggest a prevalence range between 6.9% and 10% [13]. In Spain and other European countries, reported prevalence rates are generally within the 6–8% [14,15].
Despite decades of research into its underlying pathophysiological mechanisms, the clinical management of neuropathic pain remains a major therapeutic challenge. Current pharmacological treatments, including anticonvulsants (such as gabapentinoids) [16], antidepressants (like tricyclic antidepressants and serotonin-norepinephrine reuptake inhibitors) [17], and opioids [18] often provide limited analgesic benefits, with clinically meaningful pain reduction achieved in approximately 30–50% of patients [19]. In addition, these treatments are often associated with dose-limiting systemic adverse effects, development of tolerance, and, in the case of opioids, a significant risk of dependence and misuse [20]. These limitations highlight the pressing need for more effective, mechanism-based therapeutic strategies; thus, advancing our understanding of the molecular and cellular pathways underlying peripheral and central sensitization in neuropathic pain is critical for the rational design of targeted interventions that modulate maladaptive pain signaling rather than merely providing symptomatic relief.
Neuropathic pain arises from an intricate interplay of molecular and cellular mechanisms that amplify nociceptive signaling and sustain pathological excitability. Following nerve injury, sensory neurons undergo transcriptional and post-translational modifications in key ion channels, including voltage-gated sodium channels (VGSCs) and voltage-gated calcium channels (VGCCs), leading to lowered activation thresholds and enhanced ectopic firing [21,22]. Concurrently, transient receptor potential (TRP) channels, including TRPV1 and TRPA1, are upregulated at peripheral terminals, heightening thermal and mechanical sensitivity [23]. Activated microglia and astrocytes play an essential role in neuroimmune interactions by releasing several pro-inflammatory cytokines (IL-1β and TNF-α), chemokines (CCL2 and CX3CL1), and reactive oxygen and nitrogen species (ROS and RNS, respectively), which regulate channel phosphorylation, trafficking, and membrane localization, ultimately enhancing nociceptor hyperexcitability [24,25]. In the spinal dorsal horn, these mediators enhance glutamatergic transmission via NMDA receptor phosphorylation, suppress inhibitory GABAergic and glycinergic signaling, and increase local expression of neurotrophic factors, such as NGF and BDNF, which potentiate synaptic plasticity in second-order neurons [26,27]. This creates a self-reinforcing loop where glial-derived inflammatory signals perpetuate both peripheral sensitization and central hyperexcitability. Moreover, sustained neuroinflammation induces epigenetic remodeling in neurons and glia, altering ion channel transcription and receptor density, thereby stabilizing the chronic neuropathic pain state [28].
Over the past decade, non-coding RNAs (ncRNAs), mostly microRNAs (miRNAs), have emerged as pivotal regulators of gene expression and neuronal function, providing novel insights into the molecular mechanisms underlying neuropathic pain [29]. miRNAs are small (~22 nucleotides), conserved non-coding RNAs that regulate gene expression post-transcriptionally by binding to complementary sequences in target messenger RNAs (mRNAs), leading to mRNA degradation [30]. Each miRNA can regulate many mRNAs, and conversely, individual mRNAs can be targeted by multiple miRNAs, forming a complex regulatory network capable of finely tuning cellular processes [31]. Within the nervous system, miRNAs orchestrate key mechanisms such as neuronal excitability, synaptic plasticity, axonal regeneration, and neuroinflammation, processes intimately implicated in the initiation, maintenance, and chronification of neuropathic pain [32,33].
Experimental and clinical studies have demonstrated that dysregulation of specific miRNAs contributes to maladaptive changes in both peripheral and central neural circuits following nerve injury. In the PNS, altered miRNA expression can modulate ion channel function, inflammatory mediator release, and neuronal hyperexcitability, thus promoting peripheral sensitization [34]. Within the CNS, miRNAs modulate synaptic transmission, regulate microglial and astrocyte activation, and facilitate the potentiation of nociceptive pathways, all of which are key contributors to central sensitization [35,36].
Beyond their mechanistic roles, miRNAs have emerged as promising biomarkers and therapeutic targets for neuropathic pain [37]. Their stability in many biological fluids and disease-specific expression patterns facilitates non-invasive diagnostics, prognostics, and monitoring of therapeutic responses [38]. miRNA-based therapeutics (including mimics, inhibitors-antagomiRs-, and gene delivery systems) offer precise modulation of maladaptive molecular pathways, representing a shift toward mechanism-based precision medicine [39].
This review presents a comprehensive synthesis of current evidence implicating miRNAs in the initiation, maintenance, and modulation of neuropathic pain, with a particular focus on their roles in peripheral and central sensitization, neuroinflammation, and synaptic plasticity. It also examines the translational potential of miRNAs as biomarkers and therapeutic targets, highlighting recent advances in miRNA-based strategies and the challenges of clinical implementation. By integrating insights into the complex regulatory networks governed by miRNAs in neuropathic pain, the review aims to inform future research directions and facilitate the development of mechanism-based, precision therapies to mitigate chronic pain and improve patient outcomes.
Importantly, beyond simply cataloguing individual miRNAs linked to neuropathic pain, this review employs an integrative mechanistic framework that systematically connects miRNA dysregulation with molecular and cellular substrates of peripheral and central sensitization. In addition, this review appraises the translational robustness of existing evidence and delineates key methodological and clinical barriers that must be overcome to allow the implementation of miRNA-based precision therapeutics in clinical settings.

2. MicroRNAs: Characteristics and Functions

2.1. Biogenesis of miRNAs

The biogenesis of miRNAs is a regulated, multistep process that integrates nuclear and cytoplasmic events, allowing precise post-transcriptional control of gene expression (Figure 1). MiRNAs are encoded by independent genes, introns of protein-coding genes, or polycistronic clusters, and their transcription is predominantly carried out by RNA polymerase II, which generates capped and polyadenylated primary miRNA transcripts (pri-miRNAs) [40]. A subset of miRNAs, particularly those located within repetitive sequences or specific small RNA loci, may be transcribed by RNA polymerase III [41]. Pri-miRNAs are usually several hundred to thousands of nucleotides in length and contain characteristic stem-loop structures, which are fundamental for recognition by the processing machinery [42]. These transcripts may also contain regulatory elements including enhancer-associated regions, splice sites, or RNA-binding protein motifs that influence their stability, folding, and eventual processing efficiency [43].
Figure 1. Biogenesis and effector functions of microRNAs. miRNA genes are transcribed by RNA polymerase II into pri-miRNAs, which are cleaved in the nucleus by the Drosha-DGCR8 complex to form pre-miRNAs. Pre-miRNAs are exported to the cytoplasm via Exportin-5/Ran-GTP and processed by Dicer/TRBP into miRNA duplexes. The guide strand is loaded onto AGO to assemble the RISC complex, which mediates translational repression or mRNA decay in P-bodies, depending on the miRNA-mRNA complementarity. Abbreviations: miRNA (microRNA), pri-miRNA (primary microRNA), pre-miRNA (precursor microRNA), DGCR8 (DiGeorge syndrome critical region 8), TRBP (TAR RNA-binding protein), Dicer (RNase III endonuclease), AGO (argonaute), RISC (RNA-induced silencing complex), and mRNA (messenger RNA).
Once synthesized, pri-miRNAs undergo initial nuclear processing by the microprocessor complex, composed of Drosha, an RNase III endonuclease, and DGCR8 (DiGeorge syndrome critical region 8), a double-stranded RNA-binding protein [44]. DGCR8 interacts with the pri-miRNA stem-loop, directing Drosha to the boundary between the single-stranded flanking regions and the double-stranded stem. Drosha then performs site-specific cleavage at the hairpin base, creating a 70-nucleotide pre-miRNA with a 2-nucleotide 3′ overhang [45,46], essential for recognition by nuclear export machinery. Auxiliary proteins (e.g., hnRNPs, Smads, p68/p72 helicases, and other RNA-binding factors) can modulate Drosha cleavage efficiency in response to cellular signals, stress, or developmental cues [47,48,49,50].
Pre-miRNAs are subsequently transported to the cytoplasm by exportin-5 (XPO5), a karyopherin-family nuclear transport receptor, which specifically detects the 3′ overhang and forms a ternary complex with Ran-GTP to provide energy and control, though some studies suggest Ran-GTP-independent export [51,52,53]. Proper regulation of this process is crucial, as disruptions in XPO5 expression or Ran-GTP gradients can impair miRNA maturation and gene regulatory networks [54].
In the cytoplasm, Dicer, an RNase III endonuclease, processes pre-miRNAs near the terminal loop to produce 21–25 nucleotide RNA duplexes containing the mature miRNA and the passenger (miRNA*) strand [55,56]. Dicer function is facilitated by cofactors such as TRBP or PACT, which enhance substrate recognition, stabilize Dicer-pre-miRNA interactions, and influence strand selection [57,58]. Strand selection is a critical regulatory step: the guide strand is incorporated into Argonaute (AGO) within the RNA-induced silencing complex (RISC), while the passenger strand is frequently degraded [59,60]. RISC assembly involves conformational rearrangements and ATP-dependent chaperone activity to ensure proper loading and orientation of the guide strand [61].
The miRNA-RISC complex locates target mRNAs through base-pairing, mainly between nucleotides 2–8 of the miRNA and complementary sequences in the 3′ UTR of target mRNAs [62]. Perfect or near-perfect complementarity typically triggers AGO2-mediated cleavage and degradation, more common in plants but also seen in specific animal targets [63]. Partial complementarity generally induces translational repression, deadenylation, and mRNA destabilization through cofactors including GW182, CCR4-NOT, and decapping enzymes [64,65].
Crucially, the biogenesis and function of miRNAs are context-dependent and highly dynamic, regulated by developmental stage, cellular state, and environmental signals [66]. Post-transcriptional modifications, including RNA editing (e.g., adenosine-to-inosine), 3′ uridylation or adenylation, and methylation, modulate miRNA stability, strand selection, and target specificity [67].

2.2. Mechanisms of Action of miRNAs

Through the mechanisms described in the following section, miRNAs play key roles in a broad spectrum of fundamental biological processes. miRNAs modulate cell proliferation and differentiation by controlling the expression of genes involved in cell cycle progression, lineage specification, and cellular maturation [68]. By coordinating repression or fine-tuning of multiple target mRNAs, miRNAs exert precise temporal and spatial control of gene regulation throughout embryogenesis and adult tissue homeostasis [69]. This regulation is essential for tissue homeostasis, enabling proper balance between self-renewal and differentiation, appropriate responses to developmental cues, and prevention of aberrant proliferative or differentiation programs [70].
In apoptosis, miRNAs act as either pro- or anti-apoptotic regulators by modulating genes involved in cell survival, mitochondrial integrity, and caspase activation [71]. They also regulate cellular stress responses to oxidative stress, hypoxia, endoplasmic reticulum stress, and DNA damage, promoting adaptation and survival under adverse conditions [72]. In immune regulation, miRNAs coordinate immune cell development, cytokine production, and resolution of inflammation, thereby maintaining immune homeostasis [73].
Beyond intracellular functions, miRNAs mediate intercellular communication. They are actively released into biological fluids, such as blood, saliva, urine, cerebrospinal fluid, and breast milk [74,75]. Extracellular miRNAs are highly stable, usually encapsulated in extracellular vesicles like exosomes and microvesicles [76,77,78], or linked to RNA-binding proteins (notably AGO) or lipoprotein complexes [79]. Once internalized by target cells, extracellular miRNAs modulate gene expression and influence cellular behavior, extending their regulatory role beyond the originating cell [80]. This communication is very important in immunosurveillance, tissue remodeling, tumor-stroma interactions, and metastatic niche formation [81,82,83], highlighting miRNAs as systemic signaling molecules [84].
Dysregulation of miRNAs is implicated in various diseases. In cancer, miRNAs may function as oncogenes or tumor suppressors, affecting cell cycle, apoptosis, angiogenesis, and metastasis [85]. Aberrant miRNA expression contributes to neurodegenerative disorders by influencing neuronal survival, synaptic plasticity, and neuroinflammation [86]. In cardiovascular disease, miRNAs regulate cardiac development, vascular integrity, and responses to ischemia [87]. Furthermore, disrupted miRNA-mediated immunomodulation can drive chronic inflammation and autoimmunity [88].

2.3. miRNA-Mediated Gene Regulation in the PNS and CNS: Implications for Neuronal Function

miRNAs in the CNS (Table 1) act as master regulators of neuronal architecture, synaptic plasticity, and intracellular signaling by targeting specific transcripts involved in cytoskeletal remodeling, receptor trafficking, and mitochondrial function [89]. miR-132 regulates dendritic arborization and spine morphogenesis by suppressing the GTPase-activating protein p250GAP, a negative regulator of Rac1 signaling. By reducing p250GAP levels, miR-132 promotes Rac1-mediated actin polymerization, resulting in augmented dendritic branching and spine density [90]. Additionally, miR-132 targets MeCP2, linking activity-dependent transcriptional programs to structural plasticity, thus coupling CREB-mediated transcriptional activation with cytoskeletal reorganization [91]. Through this dual targeting, neurons can integrate extracellular cues such as BDNF into both transcriptional and post-transcriptional programs that shape dendritic morphology and synaptic function.
Table 1. miRNA-mediated regulation of cytoskeletal dynamics, synaptic plasticity, and axonal development in CNS and PNS. Abbreviations: CNS (central nervous system), PNS (peripheral nervous system), Rac1 (Ras-related C3 botulinum toxin substrate 1), MeCP2 (methyl-CpG-binding protein 2), LIMK1 (LIM domain kinase 1), REST (RE1-silencing transcription factor), SOX9 (SRY-box transcription factor 9), RhoA (Ras homolog family member A), RhoC (Ras homolog family member C), APT1 (acyl-protein thioesterase 1), SIRT1 (sirtuin 1), TLX (Tailless homolog), Phf6 (PHD finger protein 6), Ezh2 (enhancer of zeste homolog 2), PSD-9 (postsynaptic density protein 95), BCL2L2 (B-cell lymphoma 2-like 2), SNCA (alpha-synuclein), SNAP25 (synaptosomal-associated protein 25), ISCU (iron-sulfur cluster assembly enzyme), PTEN (phosphatase and tensin homolog), SPRY2 (sprouty homolog 2), MAPK (mitogen-activated protein kinase), MAP1B (microtubule-associated protein 1B), PTBP1 (polypyrimidine tract-binding protein 1), BACE1 (beta-site amyloid precursor protein cleaving enzyme 1), COX4I1 (cytochrome c oxidase subunit 4I1), and LTP (long-term potentiation).
miR-134, highly enriched in dendritic spines, exerts local translational repression of Limk1, a kinase that phosphorylates cofilin to regulate actin filament dynamics [92]. Fine-tuning Limk1 translation at individual spines allows miR-134 to control spine size and morphology, directly impacting synaptic strength and long-term potentiation (LTP) [93]. Activity-dependent NMDA receptor signaling can relieve miR-134-mediated repression, enabling rapid remodeling of dendritic spines in response to neuronal activity [94]. This mechanism exemplifies how miRNAs spatially restrict protein synthesis to coordinate cytoskeletal rearrangements critical for learning and memory [95]. miR-124 establishes and maintains neuronal identity in the CNS by repressing transcriptional repressors, including REST (RE1-Silencing Transcription factor) and Sox9 [96,97]. Inhibition of REST allows the expression of numerous neuron-specific genes involved in neurotransmission, cytoskeletal organization, and synaptic vesicle trafficking [98]. Furthermore, miR-124 targets RhoA, a regulator of actin dynamics, contributing to dendritic growth and elongation [99]. Through the integration of transcriptional repression and cytoskeletal modulation, this miRNA ensures proper neuronal differentiation and the maintenance of mature neuronal morphology [100].
miR-138 governs dendritic spine morphology and synaptic function by suppressing APT1 (acyl-protein thioesterase 1), which modulates the palmitoylation of several cytoskeletal and synaptic proteins, and RhoC, a member of the Rho GTPase family controlling actin dynamics. By repressing RhoC, miR-138 reduces actomyosin contractility, allowing spine expansion and stabilization [101]. miR-181 targets transcripts involved in dendritic protein translation and synaptic modulation. By repressing SIRT1, a deacetylase affecting transcription factors and cytoskeletal proteins, miR-181 promotes dendritic branching and proper localization of synaptic proteins [102]. miR-9 is crucial for dendritic development and spine formation in CNS neurons. This miRNA inhibits REST and transcription factors such as TLX, facilitating neuronal differentiation and dendritic complexity. By regulating Rho GTPase signaling and cytoskeletal effectors, miR-9 ensures accurate dendritic arbor formation and contributes to activity-dependent plasticity [103].
miR-128 modulates CNS neuronal excitability and dendritic arborization by repressing epigenetic regulators (e.g., Phf6 and Ezh2), which influence cytoskeletal gene expression and synaptic receptor composition [104]. miR-125b regulates dendritic spine density and synaptic stability by controlling the translation of PSD-95 and other postsynaptic density proteins [105]. miR-29a/b contributes to dendritic maintenance and neuronal survival by repressing pro-apoptotic factors including Bcl2l2 and integrins involved in cytoskeletal remodeling, thus preserving dendritic integrity and synaptic stability under stress conditions [106,107]. miR-153 contributes to synaptic homeostasis via repression of α-synuclein (SNCA) and vesicular transport proteins, thereby preventing the accumulation of toxic proteins at synapses and maintaining efficient neurotransmitter release, which supports dendritic spine stability and synaptic plasticity [108,109]. Finally, miR-210 regulates dendritic mitochondrial function by targeting ISCU and additional mitochondrial genes, thus optimizing ATP production within dendritic compartments and modulating spine morphogenesis and activity-dependent structural plasticity [110].
In the PNS (Table 1), miRNAs exert precise control over axonal growth, guidance, regenerative capacity, and glial support via molecular mechanisms that are distinct from those operating in CNS neurons. miR-21 represses PTEN and SPRY2, negative regulators of the PI3K-AKT and MAPK signaling pathways. Targeting these inhibitory biomolecules enhances AKT-dependent cytoskeletal remodeling, promotes growth cone dynamics, and facilitates axonal regeneration [111]. In Schwann cells, miR-21 further modulates the expression of pro-apoptotic and growth-inhibitory genes, thus supporting myelination and remyelination during nerve repair [112]. miR-182 targets Rac1 and Cofilin in PNS neurons, critical regulators of actin filament assembly and disassembly in growth cones. Through modification of Rac1 and Cofilin activity, miR-182 ensures coordinated actin polymerization and microtubule stabilization, essential for accurate axonal guidance and elongation [113]. miR-431 regulates peripheral axonal regeneration by targeting Kremen1 and Sprouty2, inhibitors of Wnt and MAPK signaling, respectively. By blocking these target biomolecules, miR-431 promotes growth cone remodeling and potentiates regenerative signaling pathways. This includes the activation of β-catenin-mediated transcriptional programs that regulate cytoskeletal gene expression, thus facilitating axonal outgrowth and structural reorganization necessary for neuronal regeneration [114].
miR-9 is expressed in PNS neurons and targets MAP1B and Neurofilament L, cytoskeletal components involved in microtubule stabilization and axonal elongation. By fine-tuning MAP1B levels, miR-9 ensures proper axonal caliber and branching patterns, while suppressing excessive neurofilament accumulation that could impair growth cone motility [115]. miR-132 is expressed in developing DRG axons, with knockdown impairing and overexpression enhancing axon extension. It acts locally through the Ras GTPase activator Rasa1, connecting miR-132 to growth cone signaling and axon elongation [116].
miR-124 works in part by targeting Sox9 and PTBP1 in neurons and Schwann cells, promoting differentiation and blocking aberrant glial proliferation [117]. miR-195 promotes PNS regeneration by targeting BACE1, regulator of microtubule stability and local protein degradation, thereby promoting growth cone motility and axonal elongation [118].
Finally, miR-338, localized in CNS dendrites and PNS axons, targets mitochondrial transcripts including COX4I1, which encodes cytochrome c oxidase subunits essential for ATP production [119]. In CNS neurons, miR-338 modulates local dendritic energy supply to support spine morphogenesis and synaptic activity [120], whereas in PNS axons, miR-338 maintains adequate ATP levels for cytoskeletal remodeling and growth cone motility [121].

3. Role of miRNAs in Neuropathic Pain

In recent years, dysregulated miRNA expression has been identified in many experimental models of neuropathic pain. These microRNAs regulate pain signaling through the targeting of genes linked to neuroinflammation, ion channel expression, neurotransmitter release, glial activation, and neuronal excitability. Dysregulation of microRNA expression has been documented in peripheral nerves, dorsal root ganglia, the spinal cord, and supraspinal structures involved in pain processing following nerve injury. Understanding the specific miRNA-target interactions involved in neuropathic pain might provide novel insights into disease mechanisms and facilitate the development of more effective and personalized pain management strategies.
Table 2 provides a summary of all known miRNAs implicated in the development of neuropathic pain. For each miRNA, this table specifies the experimental species in which it was studied, the neuropathic pain model employed, the validated or predicted molecular targets, and the reported effects on pain-related behaviors or signaling pathways.
Table 2. Comprehensive summary of miRNAs investigated across different species and pain models, their targets, and the resulting effects on neuropathic pain modulation. Given the large number of abbreviations included in this table, a complete list with full definitions is provided in the abbreviations section.
Across the wide range of experimental models summarized in Table 2, a clear mechanistic convergence emerges despite the apparent diversity of dysregulated miRNAs, indicating that miRNA-dependent regulation in neuropathic pain is not random but clustered around a limited number of core biological pathways.
The most prominent and consistently represented mechanism is neuroinflammation. Numerous miRNAs modulate the production of pro-inflammatory cytokines such as IL-1β, IL-6, and TNF-α or regulate glial activation, including miR-15 [124], miR-93 [143], miR-98 [145], miR-124 [153,154], miR-129 [160], miR-140 [173], miR-144 [178], miR-182 [190], miR-183 [192], miR-185 [194], miR-195 [199], miR-200a [202], miR-204 [205], miR-216 [210], miR-221 [212], miR-223 [214], miR-340 [222], miR-381 [225], miR-411 [230], miR-506 [240], miR-544 [244], and miR-1906 [251].
On the other hand, several miRNAs converge on innate immune receptors and adaptor proteins within Toll-like receptor (TLR) signaling cascades. TLR4 and TLR5 are regulated by miR-100 [147], miR-150 [183], miR-154 [185], and miR-1906 [251], while IRAK1 and TRAF6 are targeted by miR-146a [180,181] and miR-125 [155], and MyD88 by miR-185 [194]. Additional convergence is observed at the level of inflammasome activation and danger signals: miR-34c [141], miR-185 [194], and miR-223 [214] regulate NLRP3, whereas miR-129 [160], miR-141 [174], miR-142 [175], miR-193 [197], and miR-381 [225] suppress HMGB1. These regulatory events consistently feed into NF-κB signaling, which emerges as a recurrent downstream hub modulated either directly or indirectly by miR-100 [147], miR-145 [179], miR-200a [202], miR-506 [240], miR-543 [243], miR-665 [247], and miR-1906 [251], highlighting NF-κB-driven transcription as a key integrative node in miRNA-mediated neuropathic pain mechanisms.
Alongside NF-κB activation, the JAK/STAT pathway represents another major signaling node. miR-93 [143], miR-98 [145], miR-218 [211], miR-544 [244], and miR-489 [235] regulate STAT3-dependent transcription, linking cytokine signaling to central sensitization and sustained inflammatory responses. In addition, numerous miRNAs converge on the PI3K/AKT/mTOR axis, including miR-15 [124], miR-20 [128], miR-145 [179], miR-182 [190], miR-183 [191], miR-212 [208], and miR-1906 [251], while MAPK signaling is regulated by miR-101 [148], miR-133a [164], and miR-223 [215]. Wnt/β-catenin (miR-30 [137], miR-92 [142], miR-216 [210]) and Notch signaling (miR-151 [184]) further extend this pattern, supporting the concept that miRNAs function as higher-order modulators integrating inflammatory and plasticity-related cascades.
Beyond inflammatory signaling, a substantial subset of miRNAs regulates neuronal excitability by targeting ion channels and synaptic components. VGSCs are frequently targeted, including Nav1.3/SCN3A by miR-96 [144], miR-212 [207], and miR-384 [228], and Nav1.1/SCN1A by miR-719 [250]. Ca2+ channel subunits are modulated by miR-103 [150], K+ channels (Kv2.1) by miR-323 [218], purinergic receptors (P2X4R by miR-106 [151] and miR-133b [165]) and P2X7R by miR-187 [195], and TRPV1 (by miR-142 [176] and miR-199 [201]).
Importantly, repeated targeting of identical molecular nodes by distinct miRNAs underscores the presence of redundant regulatory layers that stabilize pathological signaling networks. Examples such as AKT3 (miR-15 [124], miR-20 [128], and miR-145 [179]), ZEB1 (miR-28 [135], miR-128 [158], and miR-200b/429 [232]), STAT3 (miR-93 [143], miR-98 [145], and miR-544 [244]), HMGB1 (miR-129 [160], miR-141 [174], miR-142 [175], miR-193 [197], and miR-381 [225]), TRAF6 (miR-146a [180,181], and miR-125 [155]), and RAP1A (miR-202 [203], miR-203 [204], miR-331 [220], miR-340 [222], and miR-590 [246]). This recurrent targeting pattern implies that miRNAs do not act as isolated regulators but rather form an interconnected network that reinforces key pro-nociceptive pathways.

4. miRNAs as Biomarkers of Neuropathic Pain

The utility of miRNAs as biomarkers for neuropathic pain derives from a combination of their intrinsic molecular stability, regulatory specificity, and accessibility in various biological matrices [252]. Unlike most RNA species, miRNAs show remarkable resistance to enzymatic degradation, which is largely attributable to their protection within extracellular vesicles, particularly exosomes and microvesicles, as well as their association with RNA-binding proteins such as AGO2 and high-density lipoproteins (HDLs) [78,253]. This protective encapsulation not only prevents ribonuclease-mediated cleavage but also facilitates long-range intercellular communication, facilitating miRNAs released from affected neurons or glial cells to be detected in peripheral biofluids including plasma, serum, cerebrospinal fluid, and even saliva [254,255]. Consequently, miRNAs are accessible through minimally invasive sampling, enabling longitudinal monitoring of disease progression or therapeutic response, a significant advantage over conventional invasive approaches such as nerve biopsies or repeated cerebrospinal fluid collection [253].
The measurement of miRNAs is achieved via molecular approaches offering exceptional sensitivity. Quantitative real-time polymerase chain reaction (qRT-PCR) allows absolute quantification with sub-femtomolar sensitivity, while high-throughput microarray platforms and next-generation sequencing (NGS) allow profiling of the miRNA transcriptome [256,257]. Library refinements in construction methodologies, normalization strategies, and digital PCR approaches have further enhanced reproducibility, enabling comparative studies with high confidence [258,259]. Disease-specific miRNA signatures have been identified in several neuropathic pain etiologies (Table 3).
Multiple studies have shown that miRNAs in accessible biofluids serve as informative biomarkers for CNS disorders such as Alzheimer’s disease [260], epilepsy [261], and brain tumors [262]. Cerebrospinal fluid miRNA panels differentiate separate pathological from control states, with diagnostic performance often improved by incorporating genetic risk factors, while disease-specific signatures capture underlying pathophysiological processes [263]. Analogously, neuropathic pain exhibits dysregulated miRNAs in some biological fluids (plasma, serum, cerebrospinal fluid, and urine) [264,265,266,267,268,269,270,271,272].
Table 3. Differentially expressed miRNAs in blood and other fluids as potential biomarkers for diagnosing and monitoring neuropathic pain conditions. Abbreviations: miRNA (microRNA); DPN (diabetic peripheral neuropathy); CIPN (chemotherapy-induced peripheral neuropathy); PHN (post-herpetic neuralgia); CRPS (complex regional pain syndrome); and TN (trigeminal neuralgia).
Definitely, systematic profiling of miRNAs in minimally invasive samples from neuropathic pain patients could identify disease-specific biomarker panels, enabling diagnosis, patient stratification, and treatment monitoring, and translating CNS miRNA insights into clinically actionable indicators of neuropathic pain pathophysiology.
On the other hand, integrating miRNA profiling with other high-dimensional omics modalities (such as transcriptomics, proteomics, and metabolomics) enables the development of multidimensional biomarker panels with upregulated sensitivity, specificity, and predictive performance compared to single-molecule measurements [273]. These signatures allow patient stratification based on disease severity, prediction of treatment responsiveness, and longitudinal monitoring of neuropathic pain progression [274].
Despite the promise of miRNAs as biomarkers, several technical and biological challenges remain. Patient-specific differences in miRNA expression, shaped by demographic factors, genetic background, and comorbidities, pose challenges for the accurate interpretation of circulating miRNA measurements [275]. Pre-analytical variables, including sample collection methods, storage conditions, RNA extraction protocols, and detection platforms, introduce further variability, requiring strict standardization [276]. Moreover, the pleiotropic properties of many miRNAs, which concurrently modulate multiple gene networks across diverse tissues, might reduce the specificity of individual markers for neuropathic pain, potentially limiting their applicability [277]. Advancements in standardized procedures, in silico deconvolution frameworks, cohort studies, and validation in separate populations are progressively alleviating these challenges.

5. Conclusions

miRNAs have emerged as pivotal regulators in neuropathic pain, modulating multiple genes involved in nociceptive signaling, neuroinflammation, and synaptic plasticity. Their capacity to simultaneously target diverse mRNAs allows them to orchestrate complex molecular networks that contribute to the initiation and maintenance of neuropathic pain. Dysregulated expression of some miRNAs in PNS and CNS has been shown to promote nociceptor sensitization, glial activation, and maladaptive neuronal plasticity.
Dysregulated miRNA profiles in neural tissues and biological fluids may function as potential biomarkers for diagnostic and prognostic indicators of neuropathic pain. Due to their biological stability, specificity, and accessibility in serum or cerebrospinal fluid, they make promising tools for non-invasive detection and monitoring of disease progression or therapeutic response. Furthermore, modulation of miRNA activity constitutes a novel therapeutic approach. Preclinical studies employing miRNA mimics or antagomirs have demonstrated significant attenuation of pain-related behaviors and neuroinflammatory responses, highlighting the translational potential of miRNA-based therapeutic strategies. For example, modulation of NRF2, a regulator implicated in the development and maintenance of neuropathic pain, has been linked to reduced nociceptive sensitization [187,237,278].
Despite these promising findings, several limitations should be considered. As with any narrative review, the interpretation of current evidence is limited by the heterogeneity in experimental models, methodologies, and analytical approaches across studies. Differences in species, injury paradigms, tissue sampling, and miRNA detection techniques may contribute to variability in reported miRNA profiles, which limits direct comparisons and the generalization of results. Furthermore, most of the current evidence derives from preclinical animal models, and therefore the translational relevance of specific miRNA signatures to human neuropathic pain conditions remains incompletely understood. Another important limitation lies in the complexity of miRNA-mediated regulation itself. A single miRNA can target multiple genes across different pathways, while individual genes may be regulated by multiple miRNAs. This intricate regulatory network makes it challenging to attribute specific functional outcomes to individual miRNAs and underscores the need for integrative approaches combining transcriptomics, proteomics, and functional validation.
A more comprehensive elucidation of specific miRNA-gene regulatory networks and their dynamic modulation in neuropathic pain will be essential for translating these findings into effective therapeutic strategies. For instance, a deeper understanding of how exercise influences these molecular pathways may provide valuable insight into its capacity to alleviate neuropathic pain symptoms [279]. Overall, miRNAs act as a crucial nexus linking gene regulation, neuroimmune signaling, and neuronal plasticity, providing unique opportunities to uncover pain mechanisms and to facilitate the development of innovative, targeted interventions.
Finally, future research should focus on the systematic characterization of miRNA expression profiles in well-defined clinical cohorts of patients with neuropathic pain, coupled with functional studies to elucidate their biological significance. Longitudinal studies evaluating circulating miRNAs as biomarkers for disease progression and treatment response would also provide valuable translational insights. Additionally, targeted experimental approaches (such as single-cell transcriptomics and CRISPR-based gene regulation) could help clarify the causal role of specific miRNAs within nociceptive circuits. Furthermore, controlled preclinical and clinical studies investigating how interventions such as physical exercise modulate miRNA-gene networks might characterize novel non-pharmacological strategies for neuropathic pain management.

Funding

This research received no external funding.

Data Availability Statement

No new data were created or analyzed in this study. Data sharing is not applicable to this article.

Conflicts of Interest

The author declares no conflicts of interest.

Abbreviations

The following abbreviations are used in this manuscript:
3′ UTR3′ untranslated region
740 Y-P740YPDGFR
ACCAnterior cingulate cortex
AGOArgonaute
AGO2Argonaute 2
AKTProtein kinase B
AKT3RAC-alpha serine/threonine-protein kinase 3
AMPAα-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid
AMPKαAMP-activated protein kinase alpha
APT1Acyl-protein thioesterase 1
AQP4Aquaporin 4
ATG14Autophagy related 14
ATPAdenosine triphosphate
ASCApoptosis-associated speck-like protein containing a CARD
BACE1β-site amyloid precursor protein cleaving enzyme 1
BAMBIBMP and activin membrane-bound inhibitor
BAXBcl-2-like protein 4
BBBBasso, Beattie and Bresnahan locomotor rating scale
bCCIBilateral chronic constriction injury
BCL2B-cell lymphoma 2
BCL2L2B-cell lymphoma 2-like 2
BDNFBrain-derived neurotrophic factor
BRD3Bromodomain containing 3
BRD4Bromodomain containing 4
Ca2+Calcium ion
Cav1.2Voltage-gated calcium channel subunit 1.2
ceRNACompeting endogenous RNA
CCIChronic constriction injury
CCI-IoNChronic constriction injury of infraorbital nerve
CCL1Chemokine (C-C motif) ligand 1
CCL2Chemokine (C-C motif) ligand 2
CCR2C-C chemokine receptor type 2
CCR4-NOTCarbon catabolite repression 4-negative on TATA-less complex
CCR8C-C chemokine receptor type 8
CDK5Cyclin-dependent kinase 5
CIPNChemotherapy-induced peripheral neuropathy
ciRSCircular RNA
CSF1Colony stimulating factor 1
CLDN1Claudin 1
CNSCentral nervous system
COX-2Cyclooxygenase 2
COX4I1Cytochrome c oxidase subunit 4 isoform 1
CPSPChronic post-surgical pain
CREBcAMP response element-binding protein
CRPSComplex regional pain syndrome
Cx43Connexin 43
CXCL12C-X-C motif chemokine ligand 12
CXCR4C-X-C chemokine receptor type 4
CX3CL1C-X3-C motif chemokine ligand 1
CYP24A1Cytochrome P450 family 24 subfamily A member 1
DGCR5DiGeorge syndrome critical region 5
DGCR8DiGeorge syndrome critical region 8
DicerRNase III endonuclease
DNADeoxyribonucleic acid
DNMT3ADNA methyltransferase 3 alpha
DPNDiabetic peripheral neuropathy
DRGDorsal root ganglion
DUSP1Dual specificity phosphatase 1
DUSP5Dual specificity phosphatase 5
EFHD2EF-hand domain family member D2
EGR1Early growth response 1
ENO1Enolase 1
ERKExtracellular signal-regulated kinase
EZH2Enhancer of zeste homolog 2
FOXA2Forkhead box A2
GABAGamma-aminobutyric acid
GAD1Glutamate decarboxylase 1
GAD67Glutamate decarboxylase 67 kDa isoform
G6PDGlucose-6-phosphate dehydrogenase
GRK2G protein-coupled receptor kinase 2
GRM5Glutamate metabotropic receptor 5
GTPaseGuanosine triphosphatase
GW182Glycine-tryptophan protein of 182 kDa
HDLHigh-density lipoprotein
HMGB1High mobility group box 1
hnRNPHeterogeneous nuclear ribonucleoprotein
I-κBInhibitor of κB
IASPInternational Association for the Study of Pain
IGF-1Insulin-like growth factor 1
IL-1βInterleukin 1 beta
IL-10Interleukin 10
IL-12Interleukin 12
IL-18Interleukin 18
IL-33Interleukin 33
IL-6Interleukin 6
IL-6RInterleukin 6 receptor
iNOSInducible nitric oxide synthase
IRIschemia–reperfusion
IRAK1Interleukin-1 receptor-associated kinase 1
ISCUIron-sulfur cluster assembly enzyme
JNKc-Jun N-terminal kinase
KLF2Krüppel-like factor 2
KREMEN1Kringle containing transmembrane protein 1
Kv2.1Voltage-gated potassium channel subunit 2.1
LASS2Longevity assurance homolog 2
LIMK1LIM domain kinase 1
lncRNALong non-coding RNA
LPSLipopolysaccharide
LTPLong-term potentiation
MAP1BMicrotubule-associated protein 1B
MAP3K4Mitogen-activated protein kinase kinase kinase 4
MAPKMitogen-activated protein kinase
MAPK6Mitogen-activated protein kinase 6
MeCP2Methyl CpG-binding protein 2
MEKMitogen-activated protein kinase kinase
miRNAMicroRNA
miRNA*Passenger strand of microRNA duplex
MKNK2MAP kinase-interacting serine/threonine-protein kinase 2
MKP-1MAP kinase phosphatase 1
MKP3MAP kinase phosphatase 3
MMP13Matrix metallopeptidase 13
MMP9Matrix metallopeptidase 9
MNCVMotor nerve conduction velocity
MOR/OPRM1Mu opioid receptor
mRNAMessenger RNA
MST1Mammalian sterile 20-like kinase 1
mTORMechanistic target of rapamycin
MyD88Myeloid differentiation primary response 88
Nav1.1/SCN1AVoltage-gated sodium channel alpha subunit 1.1
Nav1.3/SCN3AVoltage-gated sodium channel alpha subunit 1.3
NCKX2/SLC24A2Sodium/calcium/potassium exchanger
ncRNANon-coding RNA
NEAT1Nuclear enriched abundant transcript 1
NF-κBNuclear factor kappa-light-chain-enhancer of activated B cells
NGFNerve growth factor
NGSNext-generation sequencing
NKAPNF-κB activating protein
NLBPNeck and low back pain
NLRP3NOD-, LRR- and pyrin domain-containing protein 3
NMDAN-Methyl-D-aspartate
NRF2Nuclear factor erythroid 2-related factor 2
NRG1 Neuregulin 1
OTOxytocin
OXTROxytocin receptor
p-ERK1/2Phospho-ERK1/2
PACHTED1 PATCHED domain-containing protein 1
p250GAPGTPase-activating protein p250
P2X4RP2X4 receptor
P2X7RP2X7 receptor
p38 MAPKp38 mitogen-activated protein kinase
p68/p72RNA helicases p68 and p72
PACTProtein activator of the interferon-induced protein kinase
PDC4Pyruvate decarboxylase 4
PDCD4Programmed cell death protein 4
PDK4Pyruvate dehydrogenase kinase 4
PHF6Plant homeodomain finger protein 6
PHLPP1PH domain and leucine-rich repeat protein phosphatase 1
PHNPost-herpetic neuralgia
PIAS3Protein inhibitor of activated STAT 3
PI3KPhosphoinositide 3-kinase
PIAS3Protein inhibitor of activated STAT3
PNSPeripheral nervous system
pre-miRNAPrecursor microRNA
pri-miRNAPrimary microRNA transcripts
PSD-95Postsynaptic density protein 95
PSLPartial sciatic ligation
pSNLPartial spinal nerve ligation
PTBP1Polypyrimidine tract-binding protein 1
PTENPhosphatase and tensin homolog
PWMTPaw withdrawal mechanical threshold
PWTLPaw withdrawal thermal latency
qRT-PCRQuantitative real-time polymerase chain reaction
RAC1Ras-related C3 botulinum toxin substrate 1
RAD23BRAD23 homolog B, nucleotide excision repair protein
Ran-GTPRas-related nuclear protein bound to GTP
RAP1Ras-related protein 1
RAP1ARas-related protein 1A
RASA1RAS p21 protein activator 1
RECKReversion-inducing cysteine-rich protein with kazal motifs
REEP6Receptor accessory protein 6
RESTRE1-silencing transcription factor
RhoARas homolog family member A
RhoCRas homolog family member C
RISCRNA-induced silencing complex
RNARibonucleic acid
RNSReactive nitrogen species
ROCK1Rho-associated protein kinase 1
ROCK2Rho-associated protein kinase 2
ROSReactive oxygen species
RUNX2Runt-related transcription factor 2
S1PR1Sphingosine-1-phosphate receptor 1
SCISpinal cord injury
SCIRISpinal cord ischemia–reperfusion
SGK3Serum/glucocorticoid regulated kinase 3
SIRT1Sirtuin 1
SmadMothers against decapentaplegic homolog
SMURF2SMAD ubiquitination regulatory factor 2
SNAP25Synaptosome associated protein 25
SNCAα-synuclein
SNHG12Small nucleolar RNA host gene 12
SNHG16Small nucleolar RNA host gene 16
SNHG4Small nucleolar RNA host gene 4
SNCVSensory nerve conduction velocity
SNISpared nerve injury
SNLSpinal nerve ligation
SOCS1Suppressor of cytokine signaling 1
SOCS3Suppressor of cytokine signaling 3
SOX9SRY-box transcription factor 9
SOX11SRY-box transcription factor 11
SPRY2Sprouty homolog 2
STAT3Signal transducer and activator of transcription 3
tBPITotal brachial plexus injury
TET1Ten-eleven translocation methylcytosine dioxygenase 1
TGF-βTransforming growth factor beta
TGF-β1Transforming growth factor beta 1
TGF-βR2Transforming growth factor beta receptor 2
TLRToll-like receptor
TLR4Toll-like receptor 4
TLR5Toll-like receptor 5
TLXTailless homolog
TNTrigeminal neuralgia
TNFAIP1Tumor necrosis factor alpha-induced protein 1
TNF-αTumor necrosis factor alpha
TRAF6TNF receptor associated factor 6
TRBPTAR RNA-binding protein
TRPTransient receptor potential
TRPV1Transient receptor potential vanilloid 1
TregRegulatory T cell
TWIST1Twist family BHLH transcription factor 1
U01261,4-diamino-2,3-dicyano-1,4-bis(2-aminophenylthio)butadiene
USP15Ubiquitin carboxyl-terminal hydrolase 15
VAMP-2Vesicle-associated membrane protein 2
VEGFVascular endothelial growth factor
VEGFR-2Vascular endothelial growth factor receptor 2
VGCCVoltage-gated calcium channel
VGKCVoltage-gated potassium channel
VGLUT2Vesicular glutamate transporter 2
VGSCVoltage-gated sodium channel
VPLVentral posterolateral nucleus
WNT5AWnt family member 5A
XISTX-inactive specific transcript
XPO5Exportin 5
ZEB1Zinc finger E-Box binding homeobox 1

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