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Journal of Personalized Medicine, Volume 9, Issue 2

2019 June - 14 articles

Cover Story: Personalized medicine is based on an individual’s genome to select therapeutics for disease or its symptoms. An emerging approach to personalized medicine is RNA-seq, a transcriptome-based identification of altered pathways or mutations in actively transcribed genes to target for treatment. Our results indicate a standard ‘omics procedure cannot be applied universally to RNA-seq data, especially for archival specimens, as we found increased read misalignments to pseudogenes by a common aligner program, HISAT2. Correct identification of expressed loci is critical for downstream analyses and alignment quality impacts bioinformatics outcomes, such as differential gene expression. While using bioinformatics RNA-seq pipelines empowers researchers and clinicians to make informed decisions based on identified genes and pathways, the choice of analysis tools may bias results and interpretation. View this paper.
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Articles (14)

  • Feature Paper
  • Viewpoint
  • Open Access
27 Citations
10,181 Views
12 Pages

Worldwide, there are rising trends in overweight and obesity. Therefore, novel digital tools are discussed to improve health-related behaviors. The use of smartphone applications (apps) and wearables (e.g., activity trackers) for self-monitoring of d...

  • Article
  • Open Access
32 Citations
10,376 Views
11 Pages

Evaluation of the Association of Omentin 1 rs2274907 A>T and rs2274908 G>A Gene Polymorphisms with Coronary Artery Disease in Indian Population: A Case Control Study

  • Chandan K Jha,
  • Rashid Mir,
  • Imadeldin Elfaki,
  • Jamsheed Javid,
  • Abdullatif Taha Babakr,
  • Shaheena Banu and
  • S. M. S. Chahal

Coronary artery disease (CAD) is a major cause of death all over the world. CAD is caused by atherosclerosis which is induced by the interaction of genetic factors and environmental factors. Traditional environmental risk factors include hyperlipidem...

  • Article
  • Open Access
80 Citations
13,258 Views
14 Pages

Primary Care Physicians’ Knowledge, Attitudes, and Experience with Personal Genetic Testing

  • Susanne B. Haga,
  • Esther Kim,
  • Rachel A. Myers and
  • Geoffrey S. Ginsburg

Primary care providers (PCPs) will play an important role in precision medicine. However, their lack of training and knowledge about genetics and genomics may limit their ability to advise patients or interpret or utilize test results. We evaluated P...

  • Communication
  • Open Access
8 Citations
7,586 Views
9 Pages

Gene therapy is an emerging type of treatment that may aim to provide a cure to individuals with a genetic mutation known to be causative of a specific disease. A diagnosis of the causative mutation must precede treatment with a in vivo gene therapy....

  • Article
  • Open Access
9 Citations
9,516 Views
13 Pages

Wearable technologies are being implemented in the health and medical context with increasing frequency. Such technologies offer valuable opportunities to stimulate self-management in these domains. In this context, engagement plays a crucial role. A...

  • Article
  • Open Access
23 Citations
7,374 Views
13 Pages

Despite efforts to increase the availability of clinical genetic testing and counseling for Hereditary Breast and Ovarian (HBOC)-related cancers, these services remain underutilized in clinical settings. There have been few efforts to understand the...

  • Commentary
  • Open Access
33 Citations
14,029 Views
7 Pages

Direct-to-consumer genetic testing (DTC-GT) companies are engaging health consumers in unprecedented ways and leveraging the genetic information they collect to further engage health companies. This has produced controversy about DTC-GT consumer expe...

  • Article
  • Open Access
7 Citations
6,906 Views
20 Pages

Clinical and Prognostic Significance of Cell Sensitivity to Chemotherapy Detected In Vitro on Treatment Response and Survival of Leukemia Patients

  • Maria Kolesnikova,
  • Aleksandra Sen’kova,
  • Sofia Tairova,
  • Viktor Ovchinnikov,
  • Tatiana Pospelova and
  • Marina Zenkova

Multidrug resistance (MDR) is a major challenge in leukemia treatment. The objective of this study was to identity predictors of MDR to allow for rapid and economical assessment of the efficacy of planned antitumor therapy for leukemia patients. The...

  • Article
  • Open Access
35 Citations
7,260 Views
10 Pages

Feasibility of a Comprehensive Home Monitoring Program for Sarcoidosis

  • Catharina C. Moor,
  • Yasmin Gür-Demirel and
  • Marlies S. Wijsenbeek

Sarcoidosis is a chronic, heterogeneous disease which most commonly affects the lungs. Currently, evidence-based and individually tailored treatment options in sarcoidosis are lacking. We aimed to evaluate patient experiences with a home monitoring p...

  • Article
  • Open Access
16 Citations
6,660 Views
8 Pages

Despite the enormous costs associated to mood disorders’, few studies evaluate potential cost saving from the use of pharmacogenetic tests (PGT). This study compares 12 months before the execution of the PGT versus 12 months after, in terms of...

  • Article
  • Open Access
10 Citations
7,507 Views
21 Pages

As one of the most widespread metabolic diseases, atherosclerosis affects nearly everyone as they age; arteries gradually narrow from plaque accumulation over time reducing oxygenated blood flow to central and periphery causing heart disease, stroke,...

  • Commentary
  • Open Access
20 Citations
7,514 Views
13 Pages

It is estimated that pancreatic cancer will be the second leading cause of cancer-related deaths globally by 2030, highlighting the ongoing lack of effective treatment options for this devastating condition. There is a lack of reliable prognostic or...

  • Article
  • Open Access
2 Citations
7,917 Views
10 Pages

A Tool for Shared Decision Making on Referral for Prostate Biopsy in the Primary Care Setting: Integrating Risks of Cancer with Life Expectancy

  • Jan F.M. Verbeek,
  • Daan Nieboer,
  • Chris Parker,
  • Michael W. Kattan,
  • Ewout W. Steyerberg and
  • Monique J. Roobol

Prostate cancer (PCa) testing involves a complex individually based decision making process. It should consider competing risks from other comorbidities when estimating a survival benefit from the early detection of clinically significant (cs)PCa. We...

  • Article
  • Open Access
21 Citations
13,138 Views
18 Pages

The rapid expansion of transcriptomics and affordability of next-generation sequencing (NGS) technologies generate rocketing amounts of gene expression data across biology and medicine, including cancer research. Concomitantly, many bioinformatics to...

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J. Pers. Med. - ISSN 2075-4426