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Genes, Volume 13, Issue 10

October 2022 - 241 articles

Cover Story: Malaria, caused by Plasmodium parasites, is still one of the biggest global health challenges. In recent years, epitranscriptomics is emerging as a new regulatory layer of gene expression. We present evidence of the variety of tRNA and mRNA modifications that are being characterized in Plasmodium spp., and the dynamic changes in their abundance during parasite development and cell fate. We end up outlining that new biological systems, such as the mosquito model, to decipher the unknowns about epigenetic mechanisms in vivo, and novel methodologies, to study the function of RNA modifications, are needed to discover the Achilles heel of the parasite. With this new knowledge, future strategies manipulating the epigenetics and epitranscriptomic machinery of the parasite have the potential of providing new weapons against malaria. View this paper
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Articles (241)

  • Article
  • Open Access
12 Citations
2,424 Views
14 Pages

Theory Designed Strategies to Support Implementation of Genomics in Nephrology

  • Arushi Kansal,
  • Catherine Quinlan,
  • Zornitza Stark,
  • Peter G. Kerr,
  • Andrew J. Mallett,
  • Chandni Lakshmanan,
  • Stephanie Best and
  • Kushani Jayasinghe

21 October 2022

(1) Background: Genomic testing is increasingly utilized as a clinical tool; however, its integration into nephrology remains limited. The purpose of this study was to identify barriers and prioritize interventions for the widespread implementation o...

  • Article
  • Open Access
20 Citations
4,031 Views
24 Pages

Genome-Wide Identification and Characterization of the Oat (Avena sativa L.) WRKY Transcription Factor Family

  • Kaiqiang Liu,
  • Zeliang Ju,
  • Zhifeng Jia,
  • Guoling Liang,
  • Xiang Ma and
  • Wenhui Liu

21 October 2022

The WRKY family is widely involved in the regulation of plant growth and stress response and is one of the largest gene families related to plant environmental adaptation. However, no systematic studies on the WRKY family in oat (Avena sativa L.) hav...

  • Review
  • Open Access
10 Citations
5,833 Views
30 Pages

21 October 2022

Vitamin C (VC) is an essential nutrient required for the optimal function and development of many organisms. VC has been studied for many decades, and still today, the characterization of its functions is a dynamic scientific field, mainly because of...

  • Article
  • Open Access
2 Citations
2,526 Views
21 Pages

Integration of lncRNAs, Protein-Coding Genes and Pathology Images for Detecting Metastatic Melanoma

  • Shuai Liu,
  • Yusi Fan,
  • Kewei Li,
  • Haotian Zhang,
  • Xi Wang,
  • Ruofei Ju,
  • Lan Huang,
  • Meiyu Duan and
  • Fengfeng Zhou

21 October 2022

Melanoma is a lethal skin disease that develops from moles. This study aimed to integrate multimodal data to predict metastatic melanoma, which is highly aggressive and difficult to treat. The proposed EnsembleSKCM method evaluated the prediction per...

  • Article
  • Open Access
6 Citations
3,178 Views
13 Pages

21 October 2022

Botulinum neurotoxins (BoNT) are the most potent toxins in the world. They are produced by a few dozens of strains within several clostridial species. The toxin that they produce can cause botulism, a flaccid paralysis in humans and other animals. Wi...

  • Article
  • Open Access
6 Citations
4,448 Views
17 Pages

Supervised Machine Learning Enables Geospatial Microbial Provenance

  • Chandrima Bhattacharya,
  • Braden T. Tierney,
  • Krista A. Ryon,
  • Malay Bhattacharyya,
  • Jaden J. A. Hastings,
  • Srijani Basu,
  • Bodhisatwa Bhattacharya,
  • Debneel Bagchi,
  • Somsubhro Mukherjee and
  • Lu Wang
  • + 2 authors

21 October 2022

The recent increase in publicly available metagenomic datasets with geospatial metadata has made it possible to determine location-specific, microbial fingerprints from around the world. Such fingerprints can be useful for comparing microbial niches...

  • Article
  • Open Access
10 Citations
3,087 Views
14 Pages

21 October 2022

Pancreatic adenocarcinoma (PAAD) has a poor prognosis with high individual variation in the treatment response among patients; however, there is no standard molecular typing method for PAAD prognosis in clinical practice. We analyzed DNA methylation...

  • Article
  • Open Access
6 Citations
2,591 Views
10 Pages

Evaluation of Mean Percentage of Full-Length SMN Transcripts as a Molecular Biomarker of Spinal Muscular Atrophy

  • Marianna Maretina,
  • Anna Egorova,
  • Kristina Lanko,
  • Vladislav Baranov and
  • Anton Kiselev

20 October 2022

The elevation of SMN transcript and protein level remains the principal aim of SMA therapy. Still, there is no standard molecular biomarker for the assessment of its efficacy. In the current study, we tested three methods of SMN transcript level meas...

  • Article
  • Open Access
4 Citations
2,746 Views
15 Pages

Allele-Specific Disruption of a Common STAT3 Autosomal Dominant Allele Is Not Sufficient to Restore Downstream Signaling in Patient-Derived T Cells

  • Saskia König,
  • Manfred Fliegauf,
  • Manuel Rhiel,
  • Bodo Grimbacher,
  • Tatjana I. Cornu,
  • Toni Cathomen and
  • Claudio Mussolino

20 October 2022

Dominant negative mutations in the STAT3 gene account for autosomal dominant hyper-IgE syndrome (AD-HIES). Patients typically present high IgE serum levels, recurrent infections, and soft tissue abnormalities. While current therapies focus on allevia...

  • Article
  • Open Access
8 Citations
3,206 Views
18 Pages

Selection Signature and CRISPR/Cas9-Mediated Gene Knockout Analyses Reveal ZC3H10 Involved in Cold Adaptation in Chinese Native Cattle

  • Luyu Wang,
  • Yaping Gao,
  • Jinpeng Wang,
  • Ning Huang,
  • Qiang Jiang,
  • Zhihua Ju,
  • Chunhong Yang,
  • Xiaochao Wei,
  • Yao Xiao and
  • Yaran Zhang
  • + 2 authors

20 October 2022

Cold stress is an important factor affecting cattle health, production performance, and reproductive efficiency. Understanding of the potential mechanism underlying genetic adaptation to local environments, particularly extreme cold environment, is l...

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Genes - ISSN 2073-4425