You are currently viewing a new version of our website. To view the old version click .

International Journal of Molecular Sciences, Volume 19, Issue 11

November 2018 - 414 articles

Cover Story: Fluctuations of protein three-dimensional structures and large-scale conformational transitions are crucial for the biological function of proteins and their complexes. Experimental studies of such phenomena remain very challenging, and therefore molecular modeling can be a good alternative or a valuable supporting tool for the investigation of large molecular systems and long-time events. In this minireview, we present two alternative approaches to the coarse-grained (CG) modeling of dynamic properties of protein systems. We discuss two CG representations of polypeptide chains used for Monte Carlo dynamics simulations of protein local dynamics and conformational transitions, and highly simplified structure-based elastic network models of protein flexibility. We briefly describe the main features of these models and outline some of their applications. Image prepared by Aleksandra Elzbieta Badaczewska-Dawid. View this paper.
  • Issues are regarded as officially published after their release is announced to the table of contents alert mailing list .
  • You may sign up for email alerts to receive table of contents of newly released issues.
  • PDF is the official format for papers published in both, html and pdf forms. To view the papers in pdf format, click on the "PDF Full-text" link, and use the free Adobe Reader to open them.

Articles (414)

  • Article
  • Open Access
29 Citations
5,590 Views
18 Pages

Anti-inflammatory and Neuroprotective Effects of Fungal Immunomodulatory Protein Involving Microglial Inhibition

  • Wen-Ying Chen,
  • Cheng-Yi Chang,
  • Jian-Ri Li,
  • Jiaan-Der Wang,
  • Chih-Cheng Wu,
  • Yu-Hsiang Kuan,
  • Su-Lan Liao,
  • Wen-Yi Wang and
  • Chun-Jung Chen

21 November 2018

Microglia polarization of classical activation state is crucial to the induction of neuroinflammation, and has been implicated in the pathogenesis of numerous neurodegenerative diseases. Fungal immunomodulatory proteins are emerging health-promoting...

  • Article
  • Open Access
21 Citations
5,484 Views
12 Pages

21 November 2018

Several studies have demonstrated the beneficial effect of mesenchymal stem cells (MSCs) on intracerebral hemorrhage (ICH). Enhancement of the therapeutic efficacy of MSCs in ICH is necessary, considering the diseases high association with mortality...

  • Review
  • Open Access
74 Citations
9,464 Views
20 Pages

21 November 2018

Plant tolerance to biotic and abiotic stresses is complicated by interactions between different stresses. Maintaining crop yield under abiotic stresses is the most daunting challenge for breeding resilient crop varieties. In response to environmental...

  • Article
  • Open Access
15 Citations
4,657 Views
10 Pages

Evolution and Expression Characteristics of Receptor-Like Cytoplasmic Protein Kinases in Maize, Rice and Arabidopsis

  • Mingxia Fan,
  • Wenjuan Ma,
  • Chen Liu,
  • Chunyu Zhang,
  • Suwen Wu,
  • Meiming Chen,
  • Kuichen Liu,
  • Fengchun Cai and
  • Feng Lin

21 November 2018

Receptor-like cytoplasmic protein kinases (RLCKs) are involved in various activities in plant growth and development. We have totally identified 162, 160, and 402 RLCK genes in maize, rice, and Arabidopsis genomes, respectively. Phylogenetic analyses...

  • Communication
  • Open Access
1 Citations
5,311 Views
9 Pages

21 November 2018

To determine the binding-site of a combinatorially-selected peptide possessing a fluoroprobe, a novel cysteine reactive small photo-crosslinker that can be excited by a conventional long-wavelength ultraviolet handlamp (365 nm) was synthesized via Su...

  • Article
  • Open Access
41 Citations
15,242 Views
21 Pages

Metabolic Changes of Amino Acids and Flavonoids in Tea Plants in Response to Inorganic Phosphate Limitation

  • Santosh KC,
  • Meiya Liu,
  • Qunfeng Zhang,
  • Kai Fan,
  • Yuanzhi Shi and
  • Jianyun Ruan

21 November 2018

The qualities of tea (Camellia sinensis) are not clearly understood in terms of integrated leading molecular regulatory network mechanisms behind inorganic phosphate (Pi) limitation. Thus, the present work aims to elucidate transcription factor-depen...

  • Review
  • Open Access
42 Citations
8,655 Views
14 Pages

21 November 2018

Biotherapeutics are a rapidly growing portion of the total pharmaceutical market accounting for almost one-half of recent new drug approvals. A major portion of these approvals each year are monoclonal antibodies (mAbs). During development, non-clini...

  • Article
  • Open Access
57 Citations
6,293 Views
18 Pages

Functional Biological Activity of Sorafenib as a Tumor-Treating Field Sensitizer for Glioblastoma Therapy

  • Yunhui Jo,
  • Eun Ho Kim,
  • Sei Sai,
  • Jin Su Kim,
  • Jae-Min Cho,
  • Hyeongi Kim,
  • Jeong-Hwa Baek,
  • Jeong-Yub Kim,
  • Sang-Gu Hwang and
  • Myonggeun Yoon

21 November 2018

Glioblastoma, the most common primary brain tumor in adults, is an incurable malignancy with poor short-term survival and is typically treated with radiotherapy along with temozolomide. While the development of tumor-treating fields (TTFields), elect...

  • Article
  • Open Access
6 Citations
5,424 Views
14 Pages

21 November 2018

We apply hierarchical clustering (HC) of DNA k-mer counts on multiple Fastq files. The tree structures produced by HC may reflect experimental groups and thereby indicate experimental effects, but clustering of preparation groups indicates the presen...

  • Article
  • Open Access
23 Citations
5,613 Views
18 Pages

Interactions Between Spermine-Derivatized Tentacle Porphyrins and The Human Telomeric DNA G-Quadruplex

  • Navin C. Sabharwal,
  • Jessica Chen,
  • Joo Hyun (June) Lee,
  • Chiara M. A. Gangemi,
  • Alessandro D'Urso and
  • Liliya A. Yatsunyk

21 November 2018

G-rich DNA sequences have the potential to fold into non-canonical G-Quadruplex (GQ) structures implicated in aging and human diseases, notably cancers. Because stabilization of GQs at telomeres and oncogene promoters may prevent cancer, there is an...

of 42

Get Alerted

Add your email address to receive forthcoming issues of this journal.

XFacebookLinkedIn
Int. J. Mol. Sci. - ISSN 1422-0067