2.1. Chemical Composition of the Essential Oils
The essential oil yields obtained from the studied plants ranged from 0.3% to 7.5% (v/w), with S. aromaticum showing the highest yield at approximately 7.5%, followed by E. globulus (3.0%), T. vulgaris (2.0%), A. absinthium (1.2%), S. chamaecyparissus (0.8%), and A. herba-alba (0.5%). Variations in yield can be attributed to differences in plant material, harvesting conditions, and extraction techniques.
The complexity of the essential oils was identified and quantified by chromatography coupled with mass spectrometry (GC–MS) analysis. Our findings revealed differences from those of previous analyses, highlighting variations in the chemical profiles and potential implications for their use.
In the absinthe oil analyzed, 51 compounds were identified, representing 99.81% of the total compounds. The results revealed that the oil is rich in α-thujone (
3) (29.02%) and camphor (
4) (24.34%), with notable amounts of chamazulene (6.92%) and (−)-4-terpineol (3.68%) (
Table 1).
As previously stated, in most of the previous studies, the presence of the β-thujone isomer has been usually reported to be greater than that of its isomer α-thujone (
3) in the oil [
31]. Contrary to expectations, our study revealed that α-thujone (
3) was present at a remarkably high level of 29%, whereas β-thujone was detected at only 1.67%. Surprisingly, another Moroccan study revealed that
A. absinthium essential oil was rich in 3,3,5-trimethylcyclohexene (27.93%), which was absent in our study, and camphor (
4) (22.50%, a level similar to what we found), but no α-thujone or β-thujone were detected in the sample [
22]. At least 17 major compounds, including myrcene, sabinene, sabinyl acetate, epoxyocimene, chrysanthenol, chrysanthenyl acetate, linalool, chamazulene and β-pinene, have been identified in plant oil across Europe [
31,
32,
33,
34,
35,
36]. However, our sample was devoid of
cis-epoxycimene, chrysanthenol, chrysanthenyl acetate and β pinene. Another interesting compound identified in our sample was arborescin, a sesquiterpene compound scarcely found in wormwood oil from other geographical regions. It is worth noting that sage and lavender essential oils, whose main components include, as in our oil, camphor, α-thujone, and terpinen-4-ol, showed promising antioxidant, anti-inflammatory, and antiviral activity, making these oils and compounds good candidates for the development of new antiviral agents [
37].
The chemical composition of
E. globulus labill comprised 67 compounds, representing 99.26% of the total oil (
Table 2). Our oil analysis detected spathulenol (
2) (structure shown in
Figure 1) as an abundant component at 15%, whereas the predominant compounds, 1,8-cineole or eucalyptol, the best-known molecules in eucalyptus oil, accounted for only 4.52%. These results contradict those of another Moroccan study conducted in the province of Ouejda, where the results revealed 79.85% 1,8-cineole, whereas no trace of spathulenol was detected (
2) [
38]. On the other hand, other molecules were determined in our study to be major compounds but were absent in other works [
39,
40,
41], such as caryophyllene oxide (
1) (7.67%),
trans-caryophyllene (
10) (7.33%) and farnesol (7.52%). 1,8-Cineole, major component of this essential oil, is known for its antiviral potential against different human pathogen DNA and RNA viruses including rhinoviruses. Additionally, a recent permit proposes that this substance, the major propones que esta sustancia, componente mayor component of Coldmix
®—a commercially available
Eucalyptus aetheroleum and
Abies aetheroleum blend for medicinal applications (Anadolu Hayat Essence & Chemical Ind. Co., Eskişehir, Turkey), may contribute or is even responsible for the anticovid activity attributed to this mixture [
42].
The chromatographic profile of
S. aromaticum oil (
Figure 2) revealed 16 compounds, representing 99.72% of the total oil content (
Table 3). The main compound was eugenol (
9) (54.96%), followed by
trans-caryophyllene (
10) (29.18%). These molecules are the best-known clove essential oils in various studies [
13,
14,
15,
16]. In addition to these two molecules, two components were interestingly found in our sample, α-cubebene (1.34%) and α-copaene (1.9%), which are absent from most of the publications cited above. Significantly, in silico studies indicate that eugenol exhibits a strong affinity for the structural components of SARS-CoV-2. Additionally, the oral administration of eugenol proved to reduced COVID-19 symptoms in mice treated with the SARS-CoV-2 spike S1 protein [
43].
The characterization of
T. vulgaris essential oil via GC–MS analysis revealed a total of 40 compounds, collectively accounting for 100% of the composition of the oil. Among these, 14 compounds were found to have concentrations greater than 1%, with individual percentages ranging from 1.28% to 33.33% (
Table 4). The major component identified was thymol (
5), an active monoterpene, which comprised 33.33% of the essential oil. This was followed by significant quantities of its terpenic hydrocarbon precursors,
p-cymene (
6) (25.87%) and γ-terpinene (7.21%). Additionally, a noteworthy concentration of carvacrol (5.23%), which is another phenolic monoterpene related to thymol (
5), was observed. Furthermore, camphor was demonstrated to be a chemical type in thyme essential oil from eastern Morocco at a concentration of 39.39%, but was not detected in our study [
44]. With regard to the antiviral activity of thymol, in vitro studies revealed its antiviral potential against SARS-CoV-2, probably due to its phenol ring structure [
45].
For
A. herba-alba, 50 compounds were detected in the GC/MS analysis, representing 96.73% of the total oil (
Table 5). Among these compounds, davana ether (
11) was found to be the main compound, with a concentration of 14.48%. Notably, we did not detect the presence of camphor in our analysis. Camphor is a compound whose content is particularly high in
A. alba [
44,
46,
47]. In another Moroccan study, davanone was identified as the main chemotypic compound of the essential oil, followed by davana ether (
11) [
48]. This suggests the presence of specific and advanced biosynthetic pathways. Other davanone derivatives, such as nordavanone (2.19%) and davana furan (1.31%), have also been detected; these compounds are valuable ingredients in perfumery and aromatherapy and are generally isolated from the essential oil of
Artemisia pallens [
48]. Three other oxygenated monoterpenes were recognized as fingerprints of this essential oil in addition to those mentioned above: chrysanthenone,
cis chrysanthenyl acetate and 1,8-cineole, as published in [
49,
50], where they were classified as major compounds compared with the low traces found in our sample (
cis chrysanthenyl acetate (0.97%) and 1,8-cineole (0.67%)) (see the full
Table S5). This may be explained by the difference in harvesting time, since camphor plays a role in the chrysanthenone biosynthesis pathway.
S. chamaecyparissus essential oil was also studied, yielding 70 compounds, accounting for 99.98% of the oil (
Table 6). The predominant compound observed was longiverbenone (
7) (nootkatone), with a proportion of 18.15%, followed by artemisia ketone (
8) (15.58%). This contrasts with previous reports [
23,
51], in which artemisia ketone (
8) was detected as the main compound, with a proportion close to 15.65%, whereas nookatone (
7) accounted for only 6.97%. According to numerous revised articles, various chemotypes from different regions have been noted to be completely devoid of nootkatone (
7) [
52,
53,
54,
55,
56,
57]. Other compounds known as fingerprints of this plant were detected in different proportions, such as α-curcumene (4.82%), spathulenol (
2) (4.41%) and epizanone (3.19%). It is worth noting that nootkatone, the major component of this oil proved to moderately inhibit SARS-CoV-2 [
58]. A complete list of all the identified compounds and their characteristics can be found in the
Supplementary Materials.
2.2. Cytotoxicity of Essential Oils
The cytotoxicity of essential oils was evaluated in Vero E6 cells, a widely accepted model for SARS-CoV-2 research, using a neutral red uptake assay after 48 h of incubation at concentrations ranging from 0.39 to 100 µg/mL (
Figure 3). The results revealed a clear dose-dependent cytotoxic effect, with essential oils exhibiting significantly reduced cell viability at concentrations ≥12.5 µg/mL, as confirmed by one-way ANOVA (
p < 0.05) (
Figure 2). The IC
50 values varied notably among the six essential oils, ranging from 8.32 µM for
T. vulgaris to 18.49 µM for
A. absinthium. This variation appears to be strongly linked to the chemical composition of the oils.
T. vulgaris, which had the greatest degree of cytotoxicity, contains thymol (
5) and carvacrol, both of which are phenolic compounds with well-documented membrane-disruptive and apoptosis-inducing effects on cancer and epithelial cell lines [
59,
60,
61,
62]. However, the relatively lower concentration of carvacrol (5.23%) in our sample than the 25.5% reported in [
16] could explain the moderate toxicity compared with the previously reported CC
50 value of 2 µg/mL.
E. globulus oil, which had similar cytotoxic potency (IC
50 = 8.36 µM), had a different chemical profile than typically reported: instead of a high content of 1,8-cineole (86.6%) [
16], our sample was rich in spathulenol (
2) (15%), an alcohol with known moderate cytotoxic properties [
16,
63,
64].
S. aromaticum presented an IC
50 of 12.17 µM, which may be attributed to its eugenol (
9) content (54.96%), a phenolic compound associated with strong cytotoxic effects [
59,
65]. Similarly,
S. chamaecyparissus displayed an IC
50 of 11.27 µM, which could be explained by the unusually high content of nootkatone (
7) (18.15%) in our sample. Nootkatone (
7), a sesquiterpenoid ketone rarely identified in Santolina oils, has shown potent cytotoxic activity in HL-60 and retinoblastoma cell lines, which is attributed to ROS generation, NF-κB suppression, autophagy induction, and cell cycle arrest [
66,
67,
68,
69]. In the case of
A. herba-alba (IC
50 = 13.69 µM) and
A. absinthium (IC
50 = 18.49 µM), the variability in toxicity relative to the literature data [
70,
71,
72] can likely be attributed to differences in the chemotype and constituent ratios. The greater toxicity of
A. absinthium in our study may be explained by its significant thujone (
3) content (29.02%), a monoterpene shown to be cytotoxic at low micromolar concentrations across multiple cancer cell lines [
73,
74]. These findings highlight that its cytotoxicity is not solely dependent on major constituents but also on the complex interactions among minor compounds, which may modulate their absorption, solubility, and bioavailability [
63,
75]. Additionally, functional group analysis from previous chemometric studies [
16] supports our observations, showing that phenols, alcohols, aldehydes, and esters tend to increase cytotoxic and antiviral activity, whereas ethers and hydrocarbons may reduce it. Therefore, the stronger cytotoxic effects observed in
T. vulgaris,
S. aromaticum, and
E. globulus may be attributed directly to the relative abundance of active functional groups. Overall, the observed cytotoxic profiles are strongly correlated with the phytochemical composition, the concentration and type of functional groups present, and the potential synergistic interactions between constituents, confirming the relevance of the essential oil chemotype in determining bioactivity.
2.3. Antimicrobial Activity
The antimicrobial efficacy of the essential oils, as presented in
Table 7, was evaluated against standard antibiotics and antifungal agents (
Table 8) using inhibition zone diameters as the primary metric.
E. globulus showed moderate activity against
E. coli (11 mm; +), although it was less effective than gentamicin and nalidixic acid (18 mm; ++), which is consistent with prior reports indicating limited gram-negative activity for
Eucalyptus species, with minimum inhibitory concentrations (MICs) ranging from 1000–2000 µg/mL [
17]. This moderate efficacy may reflect the specific phytochemical profile of the tested oil, which included compounds such as farnesol, which was shown to exhibit antimicrobial activity against
E. coli and
Aspergillus niger, with inhibition zones of 12 mm and 11 mm, respectively, at 50 μg/mL [
76].
P. aeruginosa was resistant to all the essential oils tested and showed only minimal sensitivity to gentamicin (10 mm; +), reflecting its well-known resistance mechanisms, including a restrictive outer membrane [
77] and active efflux pumps [
78] that limit the intracellular accumulation of lipophilic agents such as terpenes and phenolics.
In contrast, gram-positive bacteria such as
B. subtilis were more responsive:
E. globulus exhibited extreme sensitivity (+++, 20 mm), comparable to nalidixic acid. This heightened activity may be linked to better membrane permeability and the presence of bioactive components such as 1,8-cineole, spathulenol, β-caryophyllene, and caryophyllene oxide, all of which have demonstrated antimicrobial activity depending on their concentration and synergistic interactions [
79,
80].
S. aromaticum and
A. herba-alba also showed moderate sensitivity (++) to
B. subtilis, likely due to the high eugenol content in clove oil, which results in strong antimicrobial effects across a wide spectrum of gram-positive and gram-negative bacteria as well as fungi [
81].
A. herba-alba contains potent phenolic and ketonic components that have demonstrated high antimicrobial activity against
S. aureus and
Shigella sp. at low concentrations (0.07–10 mg/mL) [
82].
Similarly,
T. vulgaris exhibited moderate inhibitory effects (15 mm; +) on
S. aureus, which is consistent with the high levels of thymol and carvacrol. These phenolic compounds target bacterial membranes, disrupt metabolic processes, and are also effective against multidrug-resistant strains such as nontuberculous mycobacteria, with MICs between 32–128 µg/mL [
83]. In contrast,
S. epidermidis exhibited limited sensitivity to essential oils, whereas gentamicin showed moderate efficacy (12 mm; +). This reduced susceptibility may be due to biofilm formation and gene transfer mechanisms that increase resistance [
7].
For
C. albicans,
S. chamaecyparissus showed slight sensitivity (+, 11.75 ± 0.1 mm), whereas itraconazole exhibited extreme sensitivity (+++, 19 mm). This reduced antifungal effect may stem from differences in essential oil composition, including lower levels of potent antifungals such as nootkatone or a greater proportion of less active monoterpenes [
69]. These findings contrast with those of Abd El-Baky et al. [
84], who reported strong antifungal activity in oils rich in borneol, linalool, and eugenol. Additionally,
Candida glabrata ATCC 28226 and
Malassezia furfur ATCC 4342 were tested but showed no sensitivity to any of the essential oils evaluated, indicating that further investigations are needed to better understand these fungal responses. While the antifungal data are limited, the results against
C. albicans suggest potential for
S. chamaecyparissus, which warrants further exploration.
Importantly, the antimicrobial performance of these essential oils closely correlated with their dominant phytochemical profiles. The presence of phenolic compounds (eugenol, thymol, carvacrol), ketones (thujone, artemisia ketone, nootkatone), and sesquiterpenes (spathulenol, caryophyllene oxide) was consistently associated with stronger antimicrobial effects. These compounds act through various mechanisms, including disruption of cell membranes, inhibition of metabolic enzymes, and interference with quorum sensing. This structure–activity relationship underscores the need for detailed chemical profiling when evaluating essential oil bioactivity and supports their potential role, although currently limited, as adjuncts in antimicrobial treatment strategies.
The obtained results show poor agreement with previously reported data. The differences observed between our findings and those in the literature can be attributed to a combination of ecological, genetic, and methodological factors known to influence essential oil biosynthesis. The qualitative and quantitative composition of essential oils is strongly affected by environmental parameters such as altitude, temperature, humidity, photoperiod, and soil nutrient availability, all of which modulate the enzymatic pathways involved in terpene formation [
1,
85].
In the case of
A. absinthium, the predominance of α-thujone and camphor observed in Moroccan samples may be linked to enhanced activity of the sabinene-derived thujone biosynthetic pathway, which has been characterized in related
Artemisia species [
86]. Environmental stressors typical of semi-arid regions, such as elevated temperature and solar radiation, are known to influence monoterpene metabolism and could thereby favor α-thujone accumulation [
87]. The comparatively low β-thujone content may reflect population-specific chemotypic variation rather than differences in isomerization efficiency [
88].
Similarly, in
Eucalyptus globulus, the relatively low proportion of 1,8-cineole and the higher abundance of spathulenol may reflect species- and environment-specific variability in volatile composition. In
Eucalyptus, temperature and other abiotic factors, which are typical of Moroccan coastal ecosystems, are known to influence monoterpene emissions and alter the relative abundance of compounds, while variation in essential oil composition across taxa and populations is largely determined by species identity, developmental stage, and growth conditions [
89,
90]. Additionally, Differences may also arise from post-harvest and methodological factors. The moisture level and storage duration of plant material prior to hydrodistillation can alter volatile compound stability, while the distillation time, temperature, and apparatus configuration can influence the relative recovery of low-boiling versus high-boiling constituents [
91]. In
Thymus vulgaris, the observed predominance of thymol over its precursors p-cymene and γ-terpinene likely reflects the harvest stage, since oxidative conversion of γ-terpinene to thymol increases near flowering [
92]. Chemotypic variation is further enhanced by genetic polymorphism and potential hybridization within plant populations, giving rise to locally adapted chemical phenotypes [
93].
Overall, the enrichment of oxygenated terpenes (e.g., spathulenol, camphor, thymol) in our samples may enhance antimicrobial potency and cytotoxic selectivity, suggesting that Moroccan chemotypes could represent valuable sources of bioactive compounds for pharmaceutical and therapeutic applications.