Search Results (816)

Ongoing changes in the distribution and abundance of several tick species of medical relevance in Canada have prompted the development of the eTick platform—an image-based crowd-sourcing public surveillance tool for Canada enabling rapid tick species identification by trained personnel, and public health guidance based on tick species and province of residence of the submitter. Considering that more than 100,000 images from over 73,500 identified records representing 25 tick species have been submitted to eTick since the public launch in 2018, a partial automation of the image processing workflow could save substantial human resources, especially as submission numbers have been steadily increasing since 2021. In this study, we evaluate an end-to-end artificial intelligence (AI) pipeline to support tick identification from eTick user-submitted images, characterized by heterogeneous quality and uncontrolled acquisition conditions. Our framework integrates (i) tick localization using a fine-tuned YOLOv7 object detection model, (ii) resolution enhancement of cropped images via super-resolution Generative Adversarial Networks (RealESRGAN and SwinIR), and (iii) image classification using deep convolutional (ResNet-50) and transformer-based (ViT) architectures across three datasets (12, 6, and 3 classes) of decreasing granularities in terms of taxonomic resolution, tick life stage, and specimen viewing angle. ViT consistently outperformed ResNet-50, especially in complex classification settings. The configuration yielding the best performance—relying on object detection without incorporating super-resolution—achieved a macro-averaged F1-score exceeding 86% in the 3-class model (Dermacentor sp., other species, bad images), with minimal critical misclassifications (0.7% of “other species” misclassified as Dermacentor). Given that Dermacentor ticks represent more than 60% of tick volume submitted on the eTick platform, the integration of a low granularity model in the processing workflow could save significant time while maintaining very high standards of identification accuracy. Our findings highlight the potential of combining modern AI methods to facilitate efficient and accurate tick image processing in community science platforms, while emphasizing the need to adapt model complexity and class resolution to task-specific constraints. Full article

Plant genetics and chemotaxonomic analysis are considered key parameters in understanding evolution, plant diversity and adaptation. Korean Peninsula has a unique biogeographical landscape that supports various aromatic plant species, each with considerable ecological, ethnobotanical, and pharmacological significance. This review aims to provide a comprehensive overview of the chemotaxonomic traits, biological activities, phylogenetic relationships and potential applications of Korean aromatic plants, highlighting their significance in more accurate identification. Chemotaxonomic investigations employing techniques such as gas chromatography mass spectrometry, high-performance liquid chromatography, and nuclear magnetic resonance spectroscopy have enabled the identification of essential oils and specialized metabolites that serve as valuable taxonomic and diagnostic markers. These chemical traits play essential roles in species delimitation and in clarifying interspecific variation. The biological activities of selected taxa are reviewed, with emphasis on antimicrobial, antioxidant, anti-inflammatory, and cytotoxic effects, supported by bioassay-guided fractionation and compound isolation. In parallel, recent advances in phylogenetic reconstruction employing DNA barcoding, internal transcribed spacer regions, and chloroplast genes such as rbcL and matK are examined for their role in clarifying taxonomic uncertainties and inferring evolutionary lineages. Overall, the search period was from year 2001 to 2025 and total of 268 records were included in the study. By integrating phytochemical profiling, pharmacological evidence, and molecular systematics, this review highlights the multifaceted significance of Korean endemic aromatic plants. The conclusion highlights the importance of multidisciplinary approaches including metabolomics and phylogenomics in advancing our understanding of species diversity, evolutionary adaptation, and potential applications. Future research directions are proposed to support conservation efforts. Full article

This study presents a comprehensive taxonomic revision of the genus Dissomphalus Ashmead (Hymenoptera, Bethylidae) in the southwestern Pacific, focusing on specimens from Fiji and the Solomon Islands. Dissomphalus is the most species-rich genus within Bethylidae, with a global distribution, yet it remains poorly documented in the Oceanian region. We examined 151 male specimens collected in these islands. As a result, we describe 27 new species, 25 from Fiji and 2 from the Solomon Islands. Diagnostic morphological features, detailed illustrations, and an identification key for all species are provided. These findings substantially expand the known diversity of Dissomphalus in Oceania. Our results underscore the importance of taxonomic research in underexplored regions and highlight the potential for high levels of species endemism in island ecosystems. This revision contributes to a better understanding of the genus’ biogeographical distribution and provides essential tools for future biodiversity assessments and conservation efforts in the southwestern Pacific. Full article

Traditional type I sourdoughs are being rediscovered and increasingly used in artisanal and industrial bakeries due to the unique taste and texture, potential health benefits, and longer shelf life they confer on to baked products. These unique properties are attributed to the diverse microbial communities of sourdough, comprising both yeasts and bacteria. The traditional preservation method for type I sourdough (i.e., continuous backslopping) may lead, over time, to taxonomic and functional rearrangements of its microbial communities. Consequently, significant deviations in the characteristics of baked products can occur. In this context, this review aims to summarize the recent literature on the long-term preservation and maintenance strategies for type I sourdough and highlight the essential role that microbial biological resource centers (mBRCs) could play in the preservation and sharing of sourdough microbiomes. Specifically, the identification of appropriate preservation methods, implementation of well-defined access and benefit-sharing protocols, and development of microbiome-specific datasets, should be encouraged within the context of mBRCs. These infrastructures are expected to play a pivotal role in preserving the microbiota of fermented foods, serving as a crucial element for innovation and the safeguarding of traditional foods and culinary heritage. Full article

Madagascar harbors a rich marine biodiversity, yet detailed knowledge of its fish species remains limited. Of the 1689 species listed in 2018, only 22% had accessible cytochrome oxidase I (COI) sequences in public databases. In response to growing pressure on fishery resources, this study aims to strengthen biodiversity monitoring tools. Its objectives were to enrich the COI database for Malagasy marine fishes, create the first 12S reference library, and evaluate the taxonomic resolution of different 12S metabarcodes for eDNA analysis, namely MiFish, Teleo1, AcMDB, Ac12S, and 12SF1/R1. An integrated approach combining morphological, molecular, and phylogenetic analyses was applied for specimen identification of fish captured using various types of fishing gear in Toliara and Ranobe Bays from 2018 to 2023. The Malagasy COI database now includes 2146 sequences grouped into 502 Barcode Index Numbers (BINs) from 82 families, with 14 BINs newly added to BOLD (The Barcode of Life Data Systems), and 133 cryptic species. The 12S library comprises 524 sequences representing 446 species from 78 families. Together, the genetic datasets cover 514 species from 84 families, with the most diverse being Labridae, Apogonidae, Gobiidae, Pomacentridae, and Carangidae. However, the two markers show variable taxonomic resolution: 67 species belonging to 35 families were represented solely in the COI dataset, while 10 species from nine families were identified exclusively in the 12S dataset. For 319 species with complete 12S gene sequences associated with COI BINs (Barcode Index Numbers), 12S primer sets were used to evaluate the taxonomic resolution of five 12S metabarcodes. The MiFish marker proved to be the most effective, with an optimal similarity threshold of 98.5%. This study represents a major step forward in documenting and monitoring Madagascar’s marine biodiversity and provides a valuable genetic reference for future environmental DNA (eDNA) applications. Full article

The present study analyzed the vegetation diversity in three forests located in southern Romania and assessed their degree of similarity. Data were collected using frame quadrat sampling and species taxonomic identification. The methodology included the calculation of ecological indices (Shannon–Wiener, equitability, maximum entropy, Menhinick, Margalef, McIntosh, Gleason, and Simpson) and statistical analysis using ANOVA and Duncan tests (p < 0.05). Similarity between forests was evaluated using the Jaccard and Dice/Sørensen coefficients. The results showed that biodiversity increases with area size, and the forest ecosystem in Vlădila exhibited the highest number of woody and herbaceous species. Although the forest ecosystem in Studinița had the greatest floristic diversity, according to the Shannon–Wiener index, it also showed higher equitability (0.911 compared to 0.673 in Vlădila) due to a more uniform species distribution. The forest ecosystem in Studinița acted as an intermediate zone between those in Grădinile and Vlădila. Variations in diversity among the three areas reflect ecological differences influenced by location-specific factors such as soil type, climatic conditions, and human interventions. This suggests that ecological conditions and the physical characteristics of forests significantly impact the number and types of species that can coexist within an ecosystem. Full article

Dual mycorrhizal symbiosis, i.e., the association with both arbuscular and ectomycorrhizal fungal symbionts, is an ambiguous phenomenon concurrently considered as common among various genetic lineages of trees and a result of bias in data analyses. Recent studies have shown that the ability to form dual mycorrhizal associations is a distinguishing factor for the continental-scale invasion of alien tree species. However, the phylogenetic mechanisms that drive it remain unclear. In this study, all the evidence on root-associated symbionts of Juglandaceae from South and North America, Asia, and Europe was combined and re-analysed following current knowledge and modern molecular-based identification methods. The Juglandaceae family was revealed to represent a specific pattern of symbiotic interactions that are rare among deciduous trees and absent among conifers. Closely related phylogenetic lineages of trees usually share the same type of symbiosis, but Juglandaceae contains several possible ones concurrently. The hyperdiversity of root symbionts of Juglandaceae, unlike other tree families, was concurrently found in Central and North America, Asia, and Europe, indicating its phylogenetic determinants, which endured geographical isolation. However, for many Juglandaceae, including the invasive Juglans and Pterocarya species, this was never studied or was studied only with outdated methods. Further molecular research on root symbionts of Juglandaceae, providing long sequences and high taxonomic resolutions, is required to explain their ecological roles. Full article

This study reports the first record of Lyconus brachycolus in Spanish waters. A single specimen measuring 216 mm in total length was captured on 13 October 2024 in the Cantabrian Sea (north of Spain, 43.8467 N, −6.2109 W) by bottom trawl at a depth of 412 m. A detailed morphological description, updated characteristics, and illustrations are provided. For comparative purposes, an update of the species’ morphological characteristics was carried out. In an integrative taxonomic approach, the DNA barcode was obtained, which confirmed the morphological identification of the specimen as Lyconus brachycolus. A molecular taxonomic analysis using this marker showed the existence of two clades separated by 5.1%, corresponding to Lyconus brachycolus and Lyconus pinnatus, the two currently valid species of the genus. Full article

This study presents a bibliographic review of the genus Menegazzia in Chile, the first in over two decades, updating new records, the taxonomic placement of the genus, and the synonymization of species. Up to twenty species have been cited in the country, considering that M. albida, M. hollermayeri, and M. norstictca are synonyms of the valid species M. wilsonii, M. dispora, and M sanguinascens. A fully revised dichotomous key and color photographs are included to facilitate accurate identification, especially given the genus’s morphological convergence and sparse reproductive structures. For the first time, the divergence times of Menegazzia lineages are discussed in relation to major Southern Hemisphere geologic events, suggesting a dispersal-driven distribution with a crown age of approximately 21.2 Ma. This review consolidates fragmented data, integrates recent molecular findings, and emphasizes the genus’s value as an ecological and biogeographic indicator in Chilean temperate forests. Full article

2-Phenylethanol (2-PE), an aromatic alcohol with a rose-like fragrance, is widely used in the food, pharmaceutical, and high-end cosmetic industries. In this study, a high-yield 2-PE-producing strain was isolated and identified as Saccharomyces cerevisiae based on morphological characterization and taxonomic identification. Fermentation medium components (carbon and nitrogen sources) were optimized through single-factor experiments in shaking flasks, and fermentation medium with 40 g/L glucose, 5 g/L malt extract, 1.75 g/L corn steep liquor, 2.5 g/L yeast extract, 5 g/L malt extract, 1.75 g/L corn steep liquor was considered suitable for 2-PE production. RT-qPCR results indicated that corn steep liquor activates expression of genes related to the shikimate pathway and Ehrlich pathway (pha2, aro4, aro8, and aro9), thereby promoting the synthesis of 2-PE through these pathways. Excess yeast extract inhibited the expression of aro8 and aro9, while enhancing the expression of tdh3 and adh2, thus promoting the de novo synthesis of 2-PE. Furthermore, fermentation in a 5 L bioreactor was applied to investigate the effects of feeding strategies, inoculum proportion, and pH on 2-PE production. With a pH of 5.5 and10% inoculum proportion, the supplementation of the substrate L-Phe led to a 2-PE production of 4.81 g/L after 24 h of fermentation. Finally, in situ product recovery (ISPR) techniques was applied to alleviate 2-PE cytotoxicity, achieving a production of 6.41 g/L. This process offers a promising strategy for producing 2-PE efficiently and naturally, paving the way for further industrial applications in food, pharmaceutical, and cosmetic sectors. Full article

The green octopus, Octopus hubbsorum, is a merobenthic species that inhabits warm-temperate waters in the eastern Pacific. However, its similarity to some morphological characteristics of and its slight genetic divergence from Octopus mimus has led to the proposal that both species are conspecific. The objective of this study was the morphological and molecular identification of eggs and paralarvae of the green octopus, O. hubbsorum, to provide information contributing to clarifying its taxonomy and relationship with O. mimus. The results obtained show that although O. hubbsorum has similarities with O. mimus in terms of egg size, chromatophore pattern, number of suckers, and presence of Kölliker’s organs, the O. hubbsorum paralarvae observed in this study are smaller (1.6 mm) and have a thin layer of loose skin, not described for O. mimus. Likewise, the morphology of the beak, radula, and suckers of O. hubbsorum is described for the first time and there are no studies of these structures for O. mimus. The phylogenetic analysis (mitochondrial cytochrome C oxidase subunit I and III genes) showed that both species form a monophyletic clade but belong to separate subclades. In conclusion, although the slight genetic divergence between these two species suggests conspecificity, their disjoint geographic distribution (O. hubbsorum is found in warm-temperate waters and O. mimus in cold-temperate waters) suggests the hypothesis of being two separate species with a close phylogenetic relationship. However, further research (morphological and population analyses) is required to solve taxonomic uncertainty. Full article

The Catostemma clade comprises three genera: Aguiaria, Catostemma, and Scleronema. These genera are representatives of the tribe Adansonieae, and are part of the subfamily Bombacoideae of the Malvaceae family. Taxonomic studies of these genera are scarce and limited to isolated publications of new species or regional floras. We reviewed their taxonomy, morphology, and geography, and assessed gaps in our knowledge of this group. We carried out a bibliographic survey, an analysis of herbarium collections, and collected new material in Brazilian forests. Here, we provide an identification key, nomenclatural revisions, morphological descriptions, taxonomic comments, geographic distribution maps, illustrations, and analyses of the conservation status for all species. We also discuss probable synapomorphies of the clade, to advance our understanding of phylogenetic relationships within the Adansonieae tribe of Bombacoideae. In total, we recognize 16 species: 1 Aguiaria, 12 Catostemma, and 3 Scleronema, of which 7 are endemic to Brazil, 1 to Colombia, and 1 to Venezuela. Two species are ranked as Critically Endangered (CR), and four as Data Deficient (DD). Full article

Understanding morphological descriptions of plants documented by ancient peoples over 1000 years ago and identifying the species they described are critical for reconstructing the natural geographic distribution of plant taxa, tracking taxonomic variations, and inferring historical climate dynamics. Analyzing shifts in plant communities and climatic conditions during this period is essential to unravel the interplay among floristic composition, climate fluctuations, and anthropogenic impacts. However, research in this field remains limited, with greater emphasis placed on plant taxa from hundreds of millions of years ago. Investigations into flora and climate during the last two millennia are sparse, and pre-millennial climatic conditions remain poorly characterized. In this study, a historical text written 1475 years ago was analyzed to compile plant names and morphological features, followed by taxonomic identification. The research identified three gymnosperm species (one in Pinaceae, two in Cupressaceae), 1 Tamaricaceae species (dicotyledon), and 19 dicotyledon species. However, three plant groups could only be identified at the genus level. Using textual analysis and woody plant coexistence methods, the climate of 1475 years ago in western Henan Province, located in the middle-lower Yellow River basin in East Asia, was reconstructed. Results indicate that the mean temperature of the coldest month (MTCM) was approximately 1.3 °C higher than modern values. In comparison, the mean temperature of the warmest month (MTWM) and mean annual temperature (MAT) were lower than present-day levels. This suggests slightly cooler overall conditions with milder seasonal extremes in ancient Luoyang—a finding supported by contemporaneous studies. Furthermore, annual precipitation (AP), precipitation of the warmest quarter (PWQ), and precipitation of the coldest quarter (PCQ) in the Luoyang region 1475 years ago exceeded modern measurements, despite the area’s monsoonal climate. This suggests significantly higher atmospheric moisture content in ancient air masses compared to today. This study provides floristic and climatic baseline data for advancing our understanding of global climate variability at millennial scales. Full article

Rhododendron purdomii Rehder & E. H. Wilson (Ericaceae) is a threatened ornamental and medicinal shrub or small tree species primarily distributed in the Qinling-Daba Mountains of Central China. To facilitate its conservation and utilization, the complete chloroplast genome of Rh. purdomii was sequenced, assembled, and characterized. The cp genome exhibited a typical quadripartite structure with a total length of 208,062 bp, comprising a large single copy (LSC) region of 110,618 bp, a small single copy (SSC) region of 2606 bp, and two inverted repeat (IR) regions of 47,419 bp each. The overall GC content was 35.81%. The genome contained 146 genes, including 96 protein-coding genes, 42 transfer RNA genes, and 8 ribosomal RNA genes. Structure analysis identified 67,354 codons, 96 long repetitive sequences, and 171 simple sequence repeats. Comparative genomic analysis across Rhododendron species revealed hypervariable coding regions (accD, rps9) and non-coding regions (trnK-UUU-ycf3, trnI-CAU-rpoB, trnT-GGU-accD, rpoA-psbL, rpl20-trnC-GCA, trnI-CAU-rrn16, and trnI-CAU-rps16), which may serve as potential molecular markers for genetic identification. Phylogenetic reconstruction confirmed the monophyly of Rhododendron species and highlighted a close relationship between Rh. purdomii and Rh. henanense subsp. lingbaoense. These results provide essential genomic resources for advancing taxonomic, evolutionary, conservation, and breeding studies of Rh. purdomii and other species within the genus Rhododendron. Full article

Puffballs, a group of macrofungi belonging to the Basidiomycota, pose taxonomic challenges due to their convergent morphological features, including spherical basidiocarps and similar peridial structures, which often hinder accurate species-level identification. This study proposes a deep learning-based classification framework for eight ecologically and taxonomically important puffball species: Apioperdon pyriforme, Bovista plumbea, Bovistella utriformis, Lycoperdon echinatum, L. excipuliforme, L. molle, L. perlatum, and Mycenastrum corium. A balanced dataset of 1600 images (200 per species) was used, divided into 70% training, 15% validation, and 15% testing. To enhance generalizability, images were augmented to simulate natural variability in orientation, lighting, and background. In this study, five different deep learning models (ConvNeXt-Base, Swin Transformer, ViT, MaxViT, EfficientNet-B3) were comparatively evaluated on a balanced dataset of eight puffball species. Among these, the ConvNeXt-Base model achieved the highest performance, with 95.41% accuracy, and proved especially effective in distinguishing morphologically similar species such as Mycenastrum corium and Lycoperdon excipuliforme. The findings demonstrate that deep learning models can serve as powerful tools for the accurate classification of visually similar fungal species. This technological approach shows promise for developing automated mushroom identification systems that support citizen science, amateur naturalists, and conservation professionals. Full article