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Search Results (411)

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16 pages, 6927 KiB  
Article
Physiological and Transcriptomic Mechanisms Underlying Vitamin C-Mediated Cold Stress Tolerance in Grafted Cucumber
by Panpan Yu, Junkai Wang, Xuyang Zhang, Zhenglong Weng, Kaisen Huo, Qiuxia Yi, Chenxi Wu, Sunjeet Kumar, Hao Gao, Lin Fu, Yanli Chen and Guopeng Zhu
Plants 2025, 14(15), 2398; https://doi.org/10.3390/plants14152398 - 2 Aug 2025
Viewed by 220
Abstract
Cucumbers (Cucumis sativus L.) are highly sensitive to cold, but grafting onto cold-tolerant rootstocks can enhance their low-temperature resilience. This study investigates the physiological and molecular mechanisms by which exogenous vitamin C (Vc) mitigates cold stress in grafted cucumber seedlings. Using cucumber [...] Read more.
Cucumbers (Cucumis sativus L.) are highly sensitive to cold, but grafting onto cold-tolerant rootstocks can enhance their low-temperature resilience. This study investigates the physiological and molecular mechanisms by which exogenous vitamin C (Vc) mitigates cold stress in grafted cucumber seedlings. Using cucumber ‘Chiyu 505’ as the scion and pumpkin ‘Chuangfan No.1’ as the rootstock, seedlings were grafted using the whip grafting method. In the third true leaf expansion stage, seedlings were foliar sprayed with Vc at concentrations of 50, 100, 150, and 200 mg L−1. Three days after initial spraying, seedlings were subjected to cold stress (8 °C) for 3 days, with continued spraying. After that, morphological and physiological parameters were assessed. Results showed that 150 mg L−1 Vc treatment was most impactive, significantly reducing the cold damage index while increasing the root-to-shoot ratio, root vitality, chlorophyll content, and activities of antioxidant enzymes (SOD, POD, CAT). Moreover, this treatment enhanced levels of soluble sugars, soluble proteins, and proline compared to control. However, 200 mg L−1 treatment elevated malondialdehyde (MDA) content, indicating potential oxidative stress. For transcriptomic analysis, leaves from the 150 mg L−1 Vc and CK treatments were sampled at 0, 1, 2, and 3 days of cold stress. Differential gene expression revealed that genes associated with photosynthesis (LHCA1), stress signal transduction (MYC2-1, MYC2-2, WRKY22, WRKY2), and antioxidant defense (SOD-1, SOD-2) were initially up-regulated and subsequently down-regulated, as validated by qRT-PCR. Overall, we found that the application of 150 mg L−1 Vc enhanced cold tolerance in grafted cucumber seedlings by modulating gene expression networks related to photosynthesis, stress response, and the antioxidant defense system. This study provides a way for developing Vc biostimulants to enhance cold tolerance in grafted cucumbers, improving sustainable cultivation in low-temperature regions. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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20 pages, 1205 KiB  
Review
Patterns in Root Phenology of Woody Plants Across Climate Regions: Drivers, Constraints, and Ecosystem Implications
by Qiwen Guo, Boris Rewald, Hans Sandén and Douglas L. Godbold
Forests 2025, 16(8), 1257; https://doi.org/10.3390/f16081257 - 1 Aug 2025
Viewed by 149
Abstract
Root phenology significantly influences ecosystem processes yet remains poorly characterized across biomes. This study synthesized data from 59 studies spanning Arctic to tropical ecosystems to identify woody plants root phenological patterns and their environmental drivers. The analysis revealed distinct climate-specific patterns. Arctic regions [...] Read more.
Root phenology significantly influences ecosystem processes yet remains poorly characterized across biomes. This study synthesized data from 59 studies spanning Arctic to tropical ecosystems to identify woody plants root phenological patterns and their environmental drivers. The analysis revealed distinct climate-specific patterns. Arctic regions had a short growing season with remarkably low temperature threshold for initiation of root growth (0.5–1 °C). Temperate forests displayed pronounced spring-summer growth patterns with root growth initiation occurring at 1–9 °C. Mediterranean ecosystems showed bimodal patterns optimized around moisture availability, and tropical regions demonstrate seasonality primarily driven by precipitation. Root-shoot coordination varies predictably across biomes, with humid continental ecosystems showing the highest synchronous above- and belowground activity (57%), temperate regions exhibiting leaf-before-root emergence (55%), and Mediterranean regions consistently showing root-before-leaf patterns (100%). Winter root growth is more widespread than previously recognized (35% of studies), primarily in tropical and Mediterranean regions. Temperature thresholds for phenological transitions vary with climate region, suggesting adaptations to environmental conditions. These findings provide a critical, region-specific framework for improving models of terrestrial ecosystem responses to climate change. While our synthesis clarifies distinct phenological strategies, its conclusions are drawn from data focused primarily on Northern Hemisphere woody plants, highlighting significant geographic gaps in our current understanding. Bridging these knowledge gaps is essential for accurately forecasting how belowground dynamics will influence global carbon sequestration, nutrient cycling, and ecosystem resilience under changing climatic regimes. Full article
(This article belongs to the Section Forest Ecophysiology and Biology)
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18 pages, 3069 KiB  
Article
Transcriptomic Profiling of Buds Unveils Insights into Floral Initiation in Tea-Oil Tree (Camellia oleifera ‘changlin53’)
by Hongyan Guo, Zongshun Zhou, Jian Zhou, Chao Yan, Wenbin Zhong, Chang Li, Ying Jiang, Yaqi Yuan, Linqing Cao, Wenting Pan, Jinfeng Wang, Jia Wang, Tieding He, Yikai Hua, Yisi Liu, Lixian Cao and Chuansong Chen
Plants 2025, 14(15), 2348; https://doi.org/10.3390/plants14152348 - 30 Jul 2025
Viewed by 298
Abstract
Flowering is a key agronomic trait that directly influences the yield of the tea-oil tree (Camellia oleifera). Floral initiation, which precedes flower bud differentiation, represents a critical developmental stage affecting the flowering outcomes. However, the molecular mechanisms underlying floral initiation in [...] Read more.
Flowering is a key agronomic trait that directly influences the yield of the tea-oil tree (Camellia oleifera). Floral initiation, which precedes flower bud differentiation, represents a critical developmental stage affecting the flowering outcomes. However, the molecular mechanisms underlying floral initiation in C. oleifera remain poorly understood. In this study, buds from five key developmental stages of a 12-year-old C. oleifera cultivar ‘changlin53’ were collected as experimental samples. Scanning electron microscopy was employed to identify the stage of floral initiation. UPLC-MS/MS was used to analyze endogenous gibberellin (GA) concentrations, while transcriptomic analysis was performed to reveal the underlying transcriptional regulatory network. Six GA types were detected during floral initiation and petal development. GA4 was exclusively detected at the sprouting stage (BII), while GA3 was present in all samples but was significantly lower in BII and the flower bud primordium formation stage (BIII) than in the other samples. A total of 64 differentially expressed genes were concurrently enriched in flower development, reproductive shoot system development, and shoot system development. Weighted gene co-expression network analysis (WGCNA) identified eight specific modules significantly associated with different developmental stages. The magenta module, containing Unigene0084708 (CoFT) and Unigene0037067 (CoLEAFY), emerged as a key regulatory module driving floral initiation. Additionally, GA20OX1 and GA2OX8 were identified as candidate genes involved in GA-mediated regulation of floral initiation. Based on morphological and transcriptomic analyses, we conclude that floral initiation of C. oleifera is a continuous regulatory process governed by multiple genes, with the FT-LFY module playing a central role in the transition from apical meristem to floral meristem. Full article
(This article belongs to the Section Horticultural Science and Ornamental Plants)
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24 pages, 5270 KiB  
Article
Ecophysiological Keys to the Success of a Native-Expansive Mediterranean Species in Threatened Coastal Dune Habitats
by Mario Fernández-Martínez, Carmen Jiménez-Carrasco, Mari Cruz Díaz Barradas, Juan B. Gallego-Fernández and María Zunzunegui
Plants 2025, 14(15), 2342; https://doi.org/10.3390/plants14152342 - 29 Jul 2025
Viewed by 190
Abstract
Range-expanding species, or neonatives, are native plants that spread beyond their original range due to recent climate or human-induced environmental changes. Retama monosperma was initially planted near the Guadalquivir estuary for dune stabilisation. However, changes in the sedimentary regime and animal-mediated dispersal have [...] Read more.
Range-expanding species, or neonatives, are native plants that spread beyond their original range due to recent climate or human-induced environmental changes. Retama monosperma was initially planted near the Guadalquivir estuary for dune stabilisation. However, changes in the sedimentary regime and animal-mediated dispersal have facilitated its exponential expansion, threatening endemic species and critical dune habitats. The main objective of this study was to identify the key functional traits that may explain the competitive advantage and rapid spread of R. monosperma in coastal dune ecosystems. We compared its seasonal responses with those of three co-occurring woody species, two native (Juniperus phoenicea and J. macrocarpa) and one naturalised (Pinus pinea), at two sites differing in groundwater availability within a coastal dune area (Doñana National Park, Spain). We measured water relations, leaf traits, stomatal conductance, photochemical efficiency, stable isotopes, and shoot elongation in 12 individuals per species. Repeated-measures ANOVA showed significant effects of species and species × season interaction for relative water content, shoot elongation, effective photochemical efficiency, and stable isotopes. R. monosperma showed significantly higher shoot elongation, relative water content, and photochemical efficiency in summer compared with the other species. Stable isotope data confirmed its nitrogen-fixing capacity. This characteristic, along with the higher seasonal plasticity, contributes to its competitive advantage. Given the ecological fragility of coastal dunes, understanding the functional traits favouring the success of neonatives such as R. monosperma is essential for biodiversity conservation and ecosystem management. Full article
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17 pages, 2110 KiB  
Article
Establishment of an Efficient Regeneration System of Rosa ‘Pompon Veranda’
by Yuexin Zhang, Qin Zhou, Ruijie Li, Miao Tian, Changlong Zhong, Xiongbo Jiang and Wei Zhang
Agronomy 2025, 15(8), 1834; https://doi.org/10.3390/agronomy15081834 - 29 Jul 2025
Viewed by 285
Abstract
Roses are one of the most essential ornamental flowers in the world. At present, traditional techniques such as cross breeding are mainly used in rose breeding. The inefficiency of the in vitro regeneration system has become the limiting step for the innovation and [...] Read more.
Roses are one of the most essential ornamental flowers in the world. At present, traditional techniques such as cross breeding are mainly used in rose breeding. The inefficiency of the in vitro regeneration system has become the limiting step for the innovation and genetic improvement of rose germplasm resources. A tissue culture rapid propagation system of Rosa ‘Pompon Veranda’ was established using the stem segments with shoots as the initial experimental material. The results showed that the best disinfection method was to soak the explants in 75% ethanol for 1 min, and then soak them in 15% sodium hypochlorite solution for 15 min. The contamination rate was only about 6%. The best rooting medium for tissue culture seedlings was 1/2MS with 0.1 mg∙L−1 NAA, and the rooting rate can reach around 95%. On this basis, calluses were induced by using leaflets of tissue-cultured seedlings as explants. The results showed that the optimal medium for inducing callus tissue was MS + 5.0 mg∙L−1 2,4-D, with an induction rate of 100%. The calluses were cultured in the medium of MS with 0.01 mg∙L−1 NAA, 1.5 mg∙L−1 TDZ and 0.1 mg∙L−1 GA3 for 12 days in the dark and then transferred to light conditions. The differentiation rate of callus was 10.87%. On the medium of MS with 0.5 mg∙L−1 6-BA, 0.004 mg∙L−1 NAA and 0.1 mg∙L−1 GA3, the shoots could regenerate into whole plants. This study has established an in vitro regeneration system of R. ‘Pompon Veranda’, which is a key perquisite for the subsequent establishment of its genetic transformation system. Moreover, this method will also be an important reference for studies on quality traits such as floral scent and prickles of Rosa plants. Full article
(This article belongs to the Section Horticultural and Floricultural Crops)
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15 pages, 6009 KiB  
Article
Establishment of an In Vitro Regeneration System and Analysis of Endogenous Hormone Dynamics in Melastoma dodecandrum
by Shunshun Wang, Ruonan Tang, Fei Wang, Yun Pan, Yanru Duan, Luyu Xue, Danqi Zeng, Jinliao Chen and Donghui Peng
Horticulturae 2025, 11(8), 875; https://doi.org/10.3390/horticulturae11080875 - 25 Jul 2025
Viewed by 235
Abstract
Melastoma dodecandrum is primarily propagated through stem cuttings, which limits genetic variation and constrains breeding efforts. To overcome this limitation and facilitate molecular breeding, the establishment of a reliable and efficient regeneration system is essential. This study investigated the effects of plant growth [...] Read more.
Melastoma dodecandrum is primarily propagated through stem cuttings, which limits genetic variation and constrains breeding efforts. To overcome this limitation and facilitate molecular breeding, the establishment of a reliable and efficient regeneration system is essential. This study investigated the effects of plant growth regulators (PGRs) and culture media on the in vitro regeneration system of M. dodecandrum. The highest rate of callus induction (96.67%) was achieved when sterile leaf explants were cultured on Murashige and Skoog (MS) basal medium supplemented with 2.00 mg·L−1 2,4-dichlorophenoxyacetic acid (2,4-D) and 0.50 mg·L−1 6-benzylaminopurine (6-BA). For callus differentiation, the optimal formulation of MS + 2.0 mg·L−1 6-BA + 0.5 mg·L−1 naphthylacetic acid (NAA) resulted in a differentiation frequency of 83.33%. The optimal PGR combinations for shoot proliferation were 1.5 mg·L−1 6-BA + 0.1 mg·L−1 NAA and 0.5 mg·L−1 6-BA + 0.2 mg·L−1 NAA. The optimal rooting media were MS medium supplemented with 0.1, 0.2, or 0.5 mg·L−1 indole-3-butyric acid (IBA) or 1/2MS medium supplemented with 0.1 mg·L−1 IBA. Additionally, this study investigated the dynamic changes in endogenous hormones during the regeneration process. The levels and ratios of hormones, including gibberellin (GA3), abscisic acid (ABA), indole-3-acetic acid (IAA), and zeatin (ZT), collectively regulated the regeneration process. Elevated levels of ABA and GA3 may promote callus initiation as well as the growth and development of adventitious roots during the early induction stage. Reduced levels of ABA and IAA favored callus differentiation into shoots, whereas elevated GA3 levels facilitated proliferation of adventitious shoots. Throughout the regeneration process, fluctuations in ZT levels remained relatively stable. This study successfully established an in vitro regeneration system for M. dodecandrum using leaf explants, providing theoretical guidance and technical support for further molecular breeding efforts, genetic transformation, and industrial development. Full article
(This article belongs to the Section Propagation and Seeds)
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18 pages, 3748 KiB  
Article
Enhancement of Phenolic and Polyacetylene Production in Chinese Lobelia (Lobelia chinensis Lour.) Plant Suspension Culture by Employing Silver, Iron Oxide Nanoparticles and Multiwalled Carbon Nanotubes as Elicitors
by Xinlei Bai, Han-Sol Lee, Jong-Eun Han, Hosakatte Niranjana Murthy and So-Young Park
Processes 2025, 13(8), 2370; https://doi.org/10.3390/pr13082370 - 25 Jul 2025
Viewed by 199
Abstract
Silver nanoparticles (AgNPs), iron oxide nanoparticles (Fe2O4NPs), and multiwalled carbon nanotubes (MWCNTs) are widely used in various applications, such as biomedicine, environmental remediation, and agriculture. In addition, these nanomaterials can affect the production of bioactive compounds in plants that [...] Read more.
Silver nanoparticles (AgNPs), iron oxide nanoparticles (Fe2O4NPs), and multiwalled carbon nanotubes (MWCNTs) are widely used in various applications, such as biomedicine, environmental remediation, and agriculture. In addition, these nanomaterials can affect the production of bioactive compounds in plants that have pharmacological activities. In the current study, the in vitro plant cultures of Chinese lobelia (Lobelia chinensis Lour.) were established in MS medium and treated with 0, 12.5, 25, 37.5, and 50 mg L−1 AgNPs or Fe2O4NPs, or MWCNTs. Initially, plants were grown for four weeks without any elicitors, and after that, the cultures were treated with nano-elicitors for one week. After five weeks, the effects of nano-elicitors were estimated on growth, total phenolic, flavonoids, polyacetylenes, and ABTS/DPPH/FRAP antioxidant activity was investigated. The results showed that lower levels of AgNPs (25 mg L−1), Fe2O4NPs (25 mg L−1), and MWCNTs (12.5 mg L−1) favored the accumulation of fresh and dry biomass. Whereas, 37.5 mg L−1 AgNPs, 25 mg L−1 Fe2O4NPs, and 37.5 mg L−1 MWCNTs enhanced the accumulation of total phenolics, flavonoids, specific phenolic compounds including chlorogenic acid, catechin, phloretic acid, coumaric acid, salicylic acid, naringin, myricetin, linarin, and polyacetylenes viz. lobetylonin and lobetyolin in higher concentrations. The plant extracts elicited by nanomaterials also depicted very good antioxidant activities according to ABTS, DPPH, and FRAP assays. These results suggest that specific nanomaterials, and at specific levels, could be used for the production of bioactive compounds from shoot cultures of Chinese lobelia. Full article
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24 pages, 4352 KiB  
Article
Tissue-Specific Expression Analysis and Functional Validation of SiSCR Genes in Foxtail Millet (Setaria italica) Under Hormone and Drought Stresses, and Heterologous Expression in Arabidopsis
by Yingying Qin, Ruifu Wang, Shuwan Chen, Qian Gao, Yiru Zhao, Shuo Chang, Mao Li, Fangfang Ma and Xuemei Ren
Plants 2025, 14(14), 2151; https://doi.org/10.3390/plants14142151 - 11 Jul 2025
Viewed by 347
Abstract
The SCARECROW (SCR) transcription factor governs cell-type patterning in plant roots and Kranz anatomy of leaves, serving as a master regulator of root and shoot morphogenesis. Foxtail millet (Setaria italica), characterized by a compact genome, self-pollination, and a short growth cycle, [...] Read more.
The SCARECROW (SCR) transcription factor governs cell-type patterning in plant roots and Kranz anatomy of leaves, serving as a master regulator of root and shoot morphogenesis. Foxtail millet (Setaria italica), characterized by a compact genome, self-pollination, and a short growth cycle, has emerged as a C4 model plant. Here, we revealed two SCR paralogs in foxtail millet—SiSCR1 and SiSCR2—which exhibit high sequence conservation with ZmSCR1/1h (Zea mays), OsSCR1/2 (Oryza sativa), and AtSCR (Arabidopsis thaliana), particularly within the C-terminal GRAS domain. Both SiSCR genes exhibited nearly identical secondary structures and physicochemical profiles, with promoter analyses revealing five conserved cis-regulatory elements. Robust phylogenetic reconstruction resolved SCR orthologs into monocot- and dicot-specific clades, with SiSCR genes forming a sister branch to SvSCR from its progenitor species Setaria viridis. Spatiotemporal expression profiling demonstrated ubiquitous SiSCR gene transcription across developmental stages, with notable enrichment in germinated seeds, plants at the one-tip-two-leaf stage, leaf 1 (two days after heading), and roots during the seedling stage. Co-expression network analysis revealed that there is a correlation between SiSCR genes and other functional genes. Abscisic acid (ABA) treatment led to a significant downregulation of the expression level of SiSCR genes in Yugu1 roots, and the expression of the SiSCR genes in the roots of An04 is more sensitive to PEG6000 treatment. Drought treatment significantly upregulated SiSCR2 expression in leaves, demonstrating its pivotal role in plant adaptation to abiotic stress. Analysis of heterologous expression under the control of the 35S promoter revealed that SiSCR genes were expressed in root cortical/endodermal initial cells, endodermal cells, cortical cells, and leaf stomatal complexes. Strikingly, ectopic expression of SiSCR genes in Arabidopsis led to hypersensitivity to ABA, and ABA treatment resulted in a significant reduction in the length of the meristematic zone. These data delineate the functional divergence and evolutionary conservation of SiSCR genes, providing critical insights into their roles in root/shoot development and abiotic stress signaling in foxtail millet. Full article
(This article belongs to the Section Plant Molecular Biology)
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20 pages, 1369 KiB  
Article
Numerical Modeling of Electromagnetic Modes in a Planar Stratified Medium with a Graphene Interface
by Eugen Smolkin
Computation 2025, 13(7), 157; https://doi.org/10.3390/computation13070157 - 1 Jul 2025
Viewed by 200
Abstract
Graphene interfaces in layered dielectrics can support unique electromagnetic modes, but analyzing these modes requires robust computational techniques. This work presents a numerical method for computing TE-polarized eigenmodes in a planar stratified dielectric slab with an infinitesimally thin graphene sheet at its interface. [...] Read more.
Graphene interfaces in layered dielectrics can support unique electromagnetic modes, but analyzing these modes requires robust computational techniques. This work presents a numerical method for computing TE-polarized eigenmodes in a planar stratified dielectric slab with an infinitesimally thin graphene sheet at its interface. The governing boundary-value problem is reformulated as coupled initial-value problems and solved via a customized shooting method, enabling accurate calculation of complex propagation constants and field profiles despite the discontinuity at the graphene layer. We demonstrate that the graphene significantly alters the modal spectrum, introducing complex leaky and surface waves with attenuation due to graphene’s conductivity. Numerical results illustrate how the layers’ inhomogeneity and the graphene’s surface conductivity influence mode confinement and loss. These findings confirm the robustness of the proposed computational approach and provide insights relevant to the design and analysis of graphene-based waveguiding devices. Full article
(This article belongs to the Section Computational Engineering)
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14 pages, 6659 KiB  
Article
The Development of a Micropropagation System for a Rare Variety of an Agricultural and Medicinal Elderberry Plant Sambucus nigra ‘Albida’
by Jiří Sedlák, Martin Mészáros, Matěj Semerák and Pavel Pech
Agronomy 2025, 15(7), 1588; https://doi.org/10.3390/agronomy15071588 - 29 Jun 2025
Viewed by 296
Abstract
Black elder (Sambucus nigra L.) is a temperate shrub with flowers and fruits that are edible after processing. This species is not yet widely known in the global agricultural sector, but its adaptability and drought tolerance may generate more interest in this [...] Read more.
Black elder (Sambucus nigra L.) is a temperate shrub with flowers and fruits that are edible after processing. This species is not yet widely known in the global agricultural sector, but its adaptability and drought tolerance may generate more interest in this crop. Our study aimed to find suitable micropropagation techniques for the black elder ‘Albida’ and compare suitable statistical methods for evaluating multiplication and rooting. For micropropagation, we tested the Murashige and Skoog (MS) growth medium with selected auxins and cytokinins. Five proliferation MS media containing 1, 2, and 4 mg/L BAP or 0.5 and 1 mg/L TDZ were tested. To induce root formation, three types of auxins were tested at a concentration of 1 mg/L in a 50% MS medium: IBA, IAA, and NAA. Data analysis was performed using different parametric and nonparametric tests to robustly capture the effects of treatments across varying distributional scenarios in developing explants subjected to the interactions of internal native and externally added plant growth regulators. The average multiplication rate ranged from 1.6 to 2.0 shoots per explant. High multiplication was recorded on the MS medium with 1 mg/L 6-benzylaminopurine. The root number per rooted explant was highly variable, ranging from 3.0 to 12.0 roots per explant. The highest average root number result was observed when 1 mg/L α-naphthalenacetic acid was used. All rooted plants were successfully acclimated to normal growing conditions. This in vitro propagation protocol allows for the production of hundreds to thousands of rooted plants from one initial explant within one year, enabling faster introduction to the agronomic sector. Full article
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20 pages, 16677 KiB  
Article
Comparative Analysis of Differentially Expressed Genes and Metabolites in Waxy Maize Inbred Lines with Distinct Twin-Shoot Phenotypes
by Mengfan Qin, Guangyu Li, Kun Li, Jing Gao, Meng Li, Hao Liu, Yifeng Wang, Keke Kang, Da Zhang and Wu Li
Plants 2025, 14(13), 1951; https://doi.org/10.3390/plants14131951 - 25 Jun 2025
Viewed by 504
Abstract
Polyembryonic maize, capable of producing multiple seedlings from a single kernel, holds great potential value in agricultural and industrial applications, but the seedling quality needs to be improved. In this study, seedlings of two waxy maize (Zea mays L. sinensis Kulesh) inbred [...] Read more.
Polyembryonic maize, capable of producing multiple seedlings from a single kernel, holds great potential value in agricultural and industrial applications, but the seedling quality needs to be improved. In this study, seedlings of two waxy maize (Zea mays L. sinensis Kulesh) inbred lines, D35 (a polyembryonic line with twin shoots) and N6110 (single-shoot), exhibited similar relative growth rates during 1 to 5 days post-germination. UPLC-MS/MS profiling of 3- to 5-day-old seedling roots and shoots revealed that H2JA, MeSAG, and IAA-Val-Me were the common differentially accumulated metabolites (DAMs) of the 3-day-old vs. 5-day-old seedlings of D35 and N6110 in the same tissues, and MeSAG, tZ9G, cZROG, and DHZROG were identified in D35 vs. N6110 across the same tissues and the same periods. RNA-seq analyses showed various processes involved in seedling development, including DNA replication initiation, rhythmic processes, the cell cycle, secondary metabolic processes, and hormone biosynthetic regulation. The differentially expressed genes (DEGs) between D35 and N6110 were significantly enriched in organic hydroxy compound biosynthetic, alcohol biosynthetic, organic hydroxy compound metabolic, abscisic acid biosynthetic, and apocarotenoid biosynthetic processes. The KEGG-enriched pathways of DAMs and DEGs identified that AUX1, AHP, A-ARR, JAR1, SIMKK, ERF1, and GID2 might be conserved genes regulating seedling growth. The integrated analyses revealed that 98 TFs were potentially associated with multiple hormones, and 24 of them were identified to be core genes, including 11 AP2/ERFs, 4 Dofs, 2 bZIPs, 2 MADS-box genes, 2 MYBs, 1 GATA, 1 LOB, and 1 RWP-RK member. This study promotes a valuable understanding of the complex hormone interactions governing twin-shoot seedling growth and offers potential targets for improving crop establishment via seedling quality. Full article
(This article belongs to the Special Issue Functional Genomics and Molecular Breeding of Crops—2nd Edition)
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16 pages, 3044 KiB  
Article
Strengthening Agricultural Sustainability for Indigenous Communities Through Self-Managed Social Enterprises Arising from Their Needs
by Edith García, Yaxk’in Coronado, Guadalupe Carmona-Arroyo and Mayra de la Torre
Sustainability 2025, 17(13), 5833; https://doi.org/10.3390/su17135833 - 25 Jun 2025
Viewed by 385
Abstract
Sustainable rural development seeks to balance social, economic, and environmental needs in rural areas, improving the quality of life of communities and the long-term protection of natural resources. Indigenous local solutions give place to grassroots entrepreneurial initiatives, which together with associative and economic [...] Read more.
Sustainable rural development seeks to balance social, economic, and environmental needs in rural areas, improving the quality of life of communities and the long-term protection of natural resources. Indigenous local solutions give place to grassroots entrepreneurial initiatives, which together with associative and economic integration are key factors for agricultural production, transformation of products, self-consumption, and commercialization. This study was done in Hñähñu communities with the aim to test if participative workshops based on detonating questions are an effective approach for developing entrepreneurship agriculture initiatives of self-managed social enterprises. The initiatives were proposed by the communities to solve local problems. Three initiatives arose: (1) a community seed bank of local species associated with the Milpa including agave; (2) reforestation with agave to produce agave shoots, leaves, and sap; and (3) a company to produce agave-sap syrup. The participants, based on their traditional knowledge, developed the projects, including economic evaluation, risk analysis, and environmental aspects. Some impacts are the conservation of soil and endangered landraces, accessibility to quality seeds not commercially available, building of local organizational and entrepreneurial capacities, strengthening the community, improving the family’s income, recovery of traditional agroecological techniques, and conservation of agrobiodiversity. In conclusion, the methodology is effective for the Indigenous communities to develop initiatives for sustainable self-managed social enterprises. Full article
(This article belongs to the Special Issue Sustainable Agriculture Development: Challenges and Oppotunities)
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13 pages, 2658 KiB  
Article
Micropropagation of ‘Manacá-de-Cheiro’ (Brunfelsia uniflora (Pohl) D. Don), an Ornamental Species Native to Brazil
by Ana Victória Conde van den Broek, Mariana Pelais Leite and Jean Carlos Cardoso
Int. J. Plant Biol. 2025, 16(2), 69; https://doi.org/10.3390/ijpb16020069 - 17 Jun 2025
Viewed by 567
Abstract
The introduction of new ornamental species and cultivars is one of the hallmarks of innovation in global floriculture. Brunfelsia uniflora, a subshrub native to Brazil, has white, lilac, and blue flowers on the same plant, in addition to a distinctive fragrance. As [...] Read more.
The introduction of new ornamental species and cultivars is one of the hallmarks of innovation in global floriculture. Brunfelsia uniflora, a subshrub native to Brazil, has white, lilac, and blue flowers on the same plant, in addition to a distinctive fragrance. As it is a wild species, technologies such as large-scale clonal propagation of superior genotypes are still scarce, limiting its supply to the flower market. Therefore, a successful micropropagation protocol was developed for B. uniflora using nodal segments and shoot tips as initial explants. In the multiplication phase, the use of 6-benzylaminopurine produced the highest multiplication rates (10.3–10.9 shoots/explant) and the number of leaves in the shoots. In vitro shoot rooting using MS medium with reduced macronutrient concentrations and supplemented with IBA resulted in a 91.7% rooting rate. The greatest difficulty in micropropagating this species was the high percentage of shoots that developed calli. The highest percentage of callus formation occurred with the addition of auxins at high concentrations (1.0 and 1.5 mg L−1). Even so, the shoots and plantlets were acclimatized, demonstrating the effectiveness of this technique for the production of B. uniflora plantlets. Full article
(This article belongs to the Section Plant Reproduction)
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14 pages, 2221 KiB  
Article
Overexpression of Peony PoWOX1 Promotes Callus Induction and Root Development in Arabidopsis thaliana
by Xue Zhang, Tao Hu, Yanting Chang, Mengsi Xia, Yanjun Ma, Yayun Deng, Zehui Jiang and Wenbo Zhang
Plants 2025, 14(12), 1857; https://doi.org/10.3390/plants14121857 - 17 Jun 2025
Viewed by 538
Abstract
Plant-specific WUSCHEL (WUS)-related homeobox (WOX) family of transcription factors are involved in apical meristem maintenance, embryogenesis, lateral organ development, and hormone signaling. Among the members of this family, WOX1 is known to play essential roles in many species. However, the function of the [...] Read more.
Plant-specific WUSCHEL (WUS)-related homeobox (WOX) family of transcription factors are involved in apical meristem maintenance, embryogenesis, lateral organ development, and hormone signaling. Among the members of this family, WOX1 is known to play essential roles in many species. However, the function of the peony ‘Feng Dan’ (Paeonia ostii L.) WOX1 (PoWOX1) remains unknown. The initial bioinformatic analysis revealed that PoWOX1 belongs to the modern clade of the WOX gene family and has a highly conserved homeodomain (HD), the WUS motif, the STF-box, and the MAEWEST/WOX4-box. Subsequent heterologous overexpression in Arabidopsis thaliana revealed that PoWOX1 promotes root growth, early shoot initiation, and flowering. The root vascular tissues, especially the arrangement and size of xylem cells, were different between the PoWOX1-overexpressing transgenics and the wild-type plants, and the pericycle cells adjacent to the xylem divided more easily in the transgenics than in the wild type. Furthermore, under in vitro conditions, the transgenic leaf explants exhibited more callus induction and differentiation than the wild-type leaf explants. Thus, the study’s findings provide novel insights into the role of PoWOX1 in promoting root development and callus tissue induction and differentiation, serving as a reference for developing an efficient regeneration system for the peony. Full article
(This article belongs to the Special Issue Multifunctional Mediators in Plant Development and Stress Response)
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18 pages, 2410 KiB  
Article
Contribution of Roots and Shoots of Three Summer Cover Crops to Soil C and N Cycling Post-Termination
by Dorna Saadat, Masoud Hashemi, Stephen Herbert and Artie Siller
Agronomy 2025, 15(6), 1467; https://doi.org/10.3390/agronomy15061467 - 16 Jun 2025
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Abstract
Although summer cover crops (CCs) have relatively short growing periods, they can significantly enhance soil health by contributing to carbon (C) and nitrogen (N) cycling. Three summer CCs—including oat, buckwheat, and pea—were planted in June–July and evaluated for their biomass, allocation of assimilates [...] Read more.
Although summer cover crops (CCs) have relatively short growing periods, they can significantly enhance soil health by contributing to carbon (C) and nitrogen (N) cycling. Three summer CCs—including oat, buckwheat, and pea—were planted in June–July and evaluated for their biomass, allocation of assimilates to roots, C and N yield, and residue decomposition patterns after termination in a 14-week period. Total biomass (roots + shoots) was highest in buckwheat (5822 kg ha−1), followed by oat (4836 kg ha−1) and then pea (20 22 kg ha−1). Across species, the allocation of assimilates to roots decreased from 34% at 30 days after planting to 18% at termination. Total C yield was 2409, 1941, and 808 kg ha−1 for buckwheat, oat, and pea, respectively, with root C content considerably lower than shoot C content. The initial carbon-to-nitrogen (C:N) ratios in the roots and shoots of pea were substantially lowest among the species and remained below the 25:1 threshold, indicating potential for net N mineralization. In contrast, oat and buckwheat exhibited initial C:N of 40–50 in roots and around 30 in shoots. These ratios shifted during decomposition. After a 14-week decomposition period, all CCs had released over 50% of their root and shoot biomass. However, the release of their C and N did not directly align with biomass decay. Approximately 70% of the C in roots and shoots of oats and buckwheat remained unreleased after 14 weeks. The slow N release from oat and buckwheat residues suggests potential N immobilization, which could lead to nitrogen deficiency in subsequent crops. Full article
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