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Search Results (762)

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Keywords = quantum chemistry

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19 pages, 1941 KiB  
Article
Structural, Quantum Chemical, and Cytotoxicity Analysis of Acetylplatinum(II) Complexes with PASO2 and DAPTA Ligands
by Stefan Richter, Dušan Dimić, Milena R. Kaluđerović, Fabian Mohr and Goran N. Kaluđerović
Inorganics 2025, 13(8), 253; https://doi.org/10.3390/inorganics13080253 - 27 Jul 2025
Viewed by 428
Abstract
The development of novel platinum-based anticancer agents remains a critical objective in medicinal inorganic chemistry, particularly in light of resistance and toxicity limitations associated with cisplatin. In this study, the synthesis, structural characterization, quantum chemical analysis, and cytotoxic evaluation of four new acetylplatinum(II) [...] Read more.
The development of novel platinum-based anticancer agents remains a critical objective in medicinal inorganic chemistry, particularly in light of resistance and toxicity limitations associated with cisplatin. In this study, the synthesis, structural characterization, quantum chemical analysis, and cytotoxic evaluation of four new acetylplatinum(II) complexes (cis-[Pt(COMe)2(PASO2)2], cis-[Pt(COMe)2(DAPTA)2], trans-[Pt(COMe)Cl(DAPTA)2], and trans-[Pt(COMe)Cl(PASO2)]: 14, respectively) bearing cage phosphine ligands PASO2 (2-thia-1,3,5-triaza-phosphaadamantane 2,2-dioxide) and DAPTA (3,7-diacetyl-1,3,7-triaza-5-phosphabicyclo[3.3.1]nonane) are presented. The coordination geometries and NMR spectral features of the cis/trans isomers were elucidated through multinuclear NMR and DFT calculations at the B3LYP/6-311++G(d,p)/LanL2DZ level, with strong agreement between experimental and theoretical data. Quantum Theory of Atoms in Molecules (QTAIM) analysis was applied to investigate bonding interactions and assess the covalent character of Pt–ligand bonds. Cytotoxicity was evaluated against five human cancer cell lines. The PASO2-containing complex in cis-configuration, 1, demonstrated superior activity against thyroid (8505C) and head and neck (A253) cancer cells, with potency surpassing that of cisplatin. The DAPTA complex 2 showed enhanced activity toward ovarian (A2780) cancer cells. These findings highlight the influence of ligand structure and isomerism on biological activity, supporting the rational design of phosphine-based Pt(II) anticancer drugs. Full article
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20 pages, 2460 KiB  
Article
Kinetics of Proton Transfer and String of Conformational Transformation for 4-Pyridone-3-carboxylic Acid Under External Electric Field
by Ya-Wen Li, Rui-Zhi Feng, Xiao-Jiang Li, Ai-Chuan Liu and En-Lin Wang
Molecules 2025, 30(15), 3115; https://doi.org/10.3390/molecules30153115 - 25 Jul 2025
Viewed by 178
Abstract
In order to explore the essence of the anticoccidiosis of anticoccidial drugs under bioelectric currents, the intermolecular double-proton transfer and conformational transformation of 4-pyridone-3-carboxylic acid were investigated by quantum chemistry calculations (at the M06-2X/6-311++G**, M06-2X/aug-cc-pVTZ and CCSD(T)/aug-cc-pVTZ levels) and finite temperature string (FTS) [...] Read more.
In order to explore the essence of the anticoccidiosis of anticoccidial drugs under bioelectric currents, the intermolecular double-proton transfer and conformational transformation of 4-pyridone-3-carboxylic acid were investigated by quantum chemistry calculations (at the M06-2X/6-311++G**, M06-2X/aug-cc-pVTZ and CCSD(T)/aug-cc-pVTZ levels) and finite temperature string (FTS) under external electric fields. The solvent effect of H2O on the double-proton transfer was evaluated by the integral equation formalism polarized continuum model. The results indicate that the influences of the external electric fields along the direction of the dipole moment on double-proton transfer are significant. The corresponding products are controlled by the direction of the external electric field. Due to the first-order Stark effect, some good linear relationships form between the changes of the structures, atoms in molecules (AIMs) results, surface electrostatic potentials, barriers of the transition state, and the external electric field strengths. From the gas to solvent phase, the barrier heights increased. The spatial order parameters (ϕ, ψ) of the conformational transformation could be quickly converged through the umbrella sampling and parameter averaging, and thus the free-energy landscape for the conformational transformation was obtained. Under the external electric field, there is competition between the double-proton transfer and conformational transformation. The external electric field greatly affects the cooperativity transfer, while it has little effect on the conformational transformation. This study is helpful in the selection and updating of anticoccidial drugs. Full article
(This article belongs to the Section Computational and Theoretical Chemistry)
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13 pages, 1357 KiB  
Article
On the Computational Determination of the pKa of Some Arylboronic Acids
by André Gustavo Horta Barbosa, João Guilherme Siqueira Monteiro, Noemi de Jesus Hiller and Daniela de Luna Martins
Compounds 2025, 5(3), 28; https://doi.org/10.3390/compounds5030028 - 24 Jul 2025
Viewed by 222
Abstract
An important property of arylboronic acids, particularly when considering their use in medicinal chemistry, is their pKa in aqueous solution. The results of computational determination of absolute pKas of arylboronic acids can be very disappointing in comparison to available experimental [...] Read more.
An important property of arylboronic acids, particularly when considering their use in medicinal chemistry, is their pKa in aqueous solution. The results of computational determination of absolute pKas of arylboronic acids can be very disappointing in comparison to available experimental results, particularly in the case of large substituents. In this paper, the main origin of this problem is identified. It is shown that in order to obtain accurate pKa values for arylboronic acids from computational quantum chemistry, it is necessary to consider the effect of different possible conformations of the hydroxyl groups in the acid and its conjugate base together with the low-energy conformations of their substituents. An improved practical procedure for the computational determination of the pKas of arylboronic acids is proposed and applied to a set of recently synthesized arylboronic acids, yielding consistent results. Full article
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20 pages, 2542 KiB  
Article
Rarefied Reactive Gas Flows over Simple and Complex Geometries Using an Open-Source DSMC Solver
by Rodrigo Cassineli Palharini, João Luiz F. Azevedo and Diego Vera Sepúlveda
Aerospace 2025, 12(8), 651; https://doi.org/10.3390/aerospace12080651 - 23 Jul 2025
Viewed by 234
Abstract
During atmospheric reentry, a significant number of chemical reactions are produced inside the high-temperature shock wave formed upstream of the spacecraft. Chemical reactions can significantly alter the flowfield structure surrounding the vehicle and affect surface properties, including heat transfer, pressure, and skin friction [...] Read more.
During atmospheric reentry, a significant number of chemical reactions are produced inside the high-temperature shock wave formed upstream of the spacecraft. Chemical reactions can significantly alter the flowfield structure surrounding the vehicle and affect surface properties, including heat transfer, pressure, and skin friction coefficients. In this scenario, the primary goal of this investigation is to evaluate the Quantum-Kinetic chemistry model for computing rarefied reactive gas flow over simple and complex geometries. The results are compared with well-established reaction models available for the transitional flow regime. The study focuses on two configurations, a sphere and the Orion capsule, analyzed at different altitudes to assess the impact of chemical nonequilibrium across varying flow rarefaction levels. Including chemical reactions led to lower post-shock temperatures, broader shock structures, and significant species dissociation in both geometries. These effects strongly influenced the surface heat flux, pressure, and temperature distributions. Comparison with results from the literature confirmed the validity of the implemented QK model and highlighted the importance of including chemical kinetics when simulating hypersonic flows in the upper atmosphere. Full article
(This article belongs to the Special Issue Thermal Protection System Design of Space Vehicles)
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46 pages, 3177 KiB  
Review
Recent Advancements in Lateral Flow Assays for Food Mycotoxin Detection: A Review of Nanoparticle-Based Methods and Innovations
by Gayathree Thenuwara, Perveen Akhtar, Bilal Javed, Baljit Singh, Hugh J. Byrne and Furong Tian
Toxins 2025, 17(7), 348; https://doi.org/10.3390/toxins17070348 - 11 Jul 2025
Viewed by 666
Abstract
Mycotoxins are responsible for a multitude of diseases in both humans and animals, resulting in significant medical and economic burdens worldwide. Conventional detection methods, such as enzyme-linked immunosorbent assay (ELISA), high-performance liquid chromatography (HPLC), and liquid chromatography-tandem mass spectrometry (LC-MS/MS), are highly effective, [...] Read more.
Mycotoxins are responsible for a multitude of diseases in both humans and animals, resulting in significant medical and economic burdens worldwide. Conventional detection methods, such as enzyme-linked immunosorbent assay (ELISA), high-performance liquid chromatography (HPLC), and liquid chromatography-tandem mass spectrometry (LC-MS/MS), are highly effective, but they are generally confined to laboratory settings. Consequently, there is a growing demand for point-of-care testing (POCT) solutions that are rapid, sensitive, portable, and cost-effective. Lateral flow assays (LFAs) are a pivotal technology in POCT due to their simplicity, rapidity, and ease of use. This review synthesizes data from 78 peer-reviewed studies published between 2015 and 2024, evaluating advances in nanoparticle-based LFAs for detection of singular or multiplex mycotoxin types. Gold nanoparticles (AuNPs) remain the most widely used, due to their favorable optical and surface chemistry; however, significant progress has also been made with silver nanoparticles (AgNPs), magnetic nanoparticles, quantum dots (QDs), nanozymes, and hybrid nanostructures. The integration of multifunctional nanomaterials has enhanced assay sensitivity, specificity, and operational usability, with innovations including smartphone-based readers, signal amplification strategies, and supplementary technologies such as surface-enhanced Raman spectroscopy (SERS). While most singular LFAs achieved moderate sensitivity (0.001–1 ng/mL), only 6% reached ultra-sensitive detection (<0.001 ng/mL), and no significant improvement was evident over time (ρ = −0.162, p = 0.261). In contrast, multiplex assays demonstrated clear performance gains post-2022 (ρ = −0.357, p = 0.0008), largely driven by system-level optimization and advanced nanomaterials. Importantly, the type of sample matrix (e.g., cereals, dairy, feed) did not significantly influence the analytical sensitivity of singular or multiplex lateral LFAs (Kruskal–Wallis p > 0.05), confirming the matrix-independence of these optimized platforms. While analytical challenges remain for complex targets like fumonisins and deoxynivalenol (DON), ongoing innovations in signal amplification, biorecognition chemistry, and assay standardization are driving LFAs toward becoming reliable, ultra-sensitive, and field-deployable platforms for high-throughput mycotoxin screening in global food safety surveillance. Full article
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40 pages, 12228 KiB  
Article
Design and Synthesis of Arylboronic Acid Chemosensors for the Fluorescent-Thin Layer Chromatography (f-TLC) Detection of Mycolactone
by Gideon Atinga Akolgo, Benjamin M. Partridge, Timothy D. Craggs, Kingsley Bampoe Asiedu and Richard Kwamla Amewu
Chemosensors 2025, 13(7), 244; https://doi.org/10.3390/chemosensors13070244 - 9 Jul 2025
Viewed by 826
Abstract
Fluorescent chemosensors are increasingly becoming relevant in recognition chemistry due to their sensitivity, selectivity, fast response time, real-time detection capability, and low cost. Boronic acids have been reported for the recognition of mycolactone, the cytotoxin responsible for tissue damage in Buruli ulcer disease. [...] Read more.
Fluorescent chemosensors are increasingly becoming relevant in recognition chemistry due to their sensitivity, selectivity, fast response time, real-time detection capability, and low cost. Boronic acids have been reported for the recognition of mycolactone, the cytotoxin responsible for tissue damage in Buruli ulcer disease. A library of fluorescent arylboronic acid chemosensors with various signaling moieties with certain beneficial photophysical characteristics (i.e., aminoacridine, aminoquinoline, azo, BODIPY, coumarin, fluorescein, and rhodamine variants) and a recognition moiety (i.e., boronic acid unit) were rationally designed and synthesised using combinatorial approaches, purified, and fully characterised using a set of complementary spectrometric and spectroscopic techniques such as NMR, LC-MS, FT-IR, and X-ray crystallography. In addition, a complete set of basic photophysical quantities such as absorption maxima (λabsmax), emission maxima (λemmax), Stokes shift (∆λ), molar extinction coefficient (ε), fluorescence quantum yield (ΦF), and brightness were determined using UV-vis absorption and fluorescence emission spectroscopy techniques. The synthesised arylboronic acid chemosensors were investigated as chemosensors for mycolactone detection using the fluorescent-thin layer chromatography (f-TLC) method. Compound 7 (with a coumarin core) emerged the best (λabsmax = 456 nm, λemmax = 590 nm, ∆λ = 134 nm, ε = 52816 M−1cm−1, ΦF = 0.78, and brightness = 41,197 M−1cm−1). Full article
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18 pages, 2193 KiB  
Article
Hybrid Uracil Derivatives with Caffeine and Gramine Obtained via Click Chemistry as Potential Antioxidants and Inhibitors of Plant Pathogens
by Milda Szlaużys, Kamil Ostrowski, Damian Nowak, Wiesław Prukała, Justyna Starzyk, Beata Jasiewicz and Lucyna Mrówczyńska
Molecules 2025, 30(13), 2714; https://doi.org/10.3390/molecules30132714 - 24 Jun 2025
Viewed by 410
Abstract
A series of novel hybrid uracil derivatives incorporating the natural alkaloids caffeine or gramine, linked via 1,2,3-triazole ring, were synthetized using click chemistry. The structures of the obtained compounds were confirmed by spectroscopic methods, including 1H NMR, 13C NMR, FT-IR, and [...] Read more.
A series of novel hybrid uracil derivatives incorporating the natural alkaloids caffeine or gramine, linked via 1,2,3-triazole ring, were synthetized using click chemistry. The structures of the obtained compounds were confirmed by spectroscopic methods, including 1H NMR, 13C NMR, FT-IR, and mass spectrometry. The biological activity of hybrids was evaluated in vitro, including assessments of hemolytic activity, antioxidant potential, antifungal efficacy, and antibacterial activity. Additionally, molecular docking studies were conducted in silico for the most active antioxidant candidate. The results revealed that the hemocompatibility of the derivatives was structure-dependent. While caffeine-containing hybrids exhibited moderate-to-low cytoprotective activity under oxidative stress conditions, those incorporating gramine showed significantly higher potency. A plausible molecular mechanism underlying their cytoprotective activity is proposed. Several compounds also inhibited the growth of the plant pathogens Fusarium culmorum and Botrytis cinerea. The promising antioxidant and antifungal properties of selected uracil–alkaloid hybrids highlight their potential as multifunctional bioactive compounds for managing oxidative stress and controlling plant pathogens. Furthermore, the finding demonstrates the effectiveness of click chemistry as a versatile tool for the synthesis of bioactive heterocyclic compounds. Full article
(This article belongs to the Special Issue Heterocycles in Medicinal Chemistry III)
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17 pages, 4465 KiB  
Article
Sustainable Use of Expired Metoprolol as Corrosion Inhibitor for Carbon Steel in Saline Solution
by Mircea Laurențiu Dan, Nataliia Rudenko, Cristian George Vaszilcsin and George-Daniel Dima
Coatings 2025, 15(7), 742; https://doi.org/10.3390/coatings15070742 - 22 Jun 2025
Viewed by 454
Abstract
The current paper examines the sustainable possibility for recycling unused or expired Metoprolol (MET), a benzodiazepine derivative, as an effective corrosion inhibitor for carbon steel in saline solutions. Repurposing expired medicinal drugs aligns with green chemistry concepts and supports circular economy initiatives by [...] Read more.
The current paper examines the sustainable possibility for recycling unused or expired Metoprolol (MET), a benzodiazepine derivative, as an effective corrosion inhibitor for carbon steel in saline solutions. Repurposing expired medicinal drugs aligns with green chemistry concepts and supports circular economy initiatives by reducing pharmaceutical waste and averting the production of new synthetic inhibitors. The technical benefit of recycling expired MET drugs pertains to the elimination of costs associated with organic inhibitor manufacturing and the decrease in disposal expenses for the expired medication. A combination of electrochemical techniques (potentiodynamic polarization and electrochemical impedance spectroscopy) and quantum chemical calculations was employed to evaluate the inhibitory mechanism and efficacy of MET. At a concentration of 10−3 M, MET reduced the corrosion current density from 19.38 to 5.97 μA cm−2, achieving a maximum IE of 69.1%. Adsorption Gibbs free energy, determined using different adsorption isotherms, revealed that interactions between metal atoms and MET adsorbed molecules have a chemical character with a ∆Goads value of −50.7 kJ·mol−1. Furthermore, quantum chemistry calculations indicate that the investigated drug, owing to its molecular structure (EHOMO = −9.12 eV, ELUMO = 0.21 eV, µ = 3.95 D), possesses the capacity to establish an adsorption layer on the metal surface, thereby impeding the diffusion of molecules and ions involved in the overall corrosion process. The results obtained using the different techniques were in good agreement and highlighted the effectiveness of MET in the corrosion inhibition of carbon steel. Full article
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21 pages, 2646 KiB  
Article
BOPAM’s Bright and Dark Excited States: Insight from Structural, Photophysical, and Quantum Chemical Investigations
by Kexin Yu, Thanh Chung Pham, Jianjun Huang, Yixuan Li, Luc Van Meervelt, Mark Van der Auweraer, Daniel Escudero and Wim Dehaen
Molecules 2025, 30(13), 2673; https://doi.org/10.3390/molecules30132673 - 20 Jun 2025
Viewed by 362
Abstract
BOPAM exhibits high fluorescence quantum yields, along with exceptional photostability, rendering it a promising platform for applications as fluorescence sensors. However, the development of BOPAM-based fluorophores with extended emission wavelengths remains limited, and the underlying mechanisms of fluorescence quenching via the population of [...] Read more.
BOPAM exhibits high fluorescence quantum yields, along with exceptional photostability, rendering it a promising platform for applications as fluorescence sensors. However, the development of BOPAM-based fluorophores with extended emission wavelengths remains limited, and the underlying mechanisms of fluorescence quenching via the population of dark twisted intramolecular charge transfer (1TICT) excited states are not yet fully understood. To address these gaps, we synthesized a series of BOPAM derivatives by incorporating electron-donating groups at the boron atoms and the phenyl rings of the BOPAM core. The introduction of bromide, phenyl, and naphthyl groups preserved the intrinsic locally excited (1LE) emission of BOPAM. In contrast, the incorporation of diphenylamine (BP-DA) and triphenylamine (BP-TA) moieties resulted in a red-shifted emission, attributed to an enhanced intramolecular charge transfer (ICT) process. Notably, in acetonitrile, BP-DA exhibited weak fluorescence originating from a 1TICT state, which was populated via the S21TICT transition. Furthermore, the emission observed from BP-TA was associated with a higher-lying excited state, likely the initially populated S2 state possessing a 1LE character. These findings not only introduce novel red-emissive BOPAM-based fluorophores, but also offer valuable insights into the role of the S2 state in governing fluorescence quenching mechanisms in BOPAM derivatives. Full article
(This article belongs to the Special Issue BODIPYs: State of the Art and Future Perspectives)
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10 pages, 1754 KiB  
Article
A Study of the Inclusion Complex Formed Between Cucurbit[8]uril and N,4-Di(pyridinyl)benzamide Derivative
by Zhikang Wang, Mingjie Yang, Weibo Yang, Zhongzheng Gao, Hui Zhao, Gang Wei and Jifu Sun
Organics 2025, 6(2), 26; https://doi.org/10.3390/org6020026 - 17 Jun 2025
Viewed by 353
Abstract
The interaction between cucurbit[8]uril (Q[8]) and the guest 1-methyl-4-(4-(1-methylpyridin-1-ium-4-yl)benzamido)pyridin-1-ium (PB2+) has been thoroughly investigated. Multiple techniques were employed, including 1H NMR spectroscopy, mass spectrometry, isothermal titration calorimetry (ITC), UV–vis absorption spectrophotometry, and quantum chemistry calculations. The experimental results and calculation [...] Read more.
The interaction between cucurbit[8]uril (Q[8]) and the guest 1-methyl-4-(4-(1-methylpyridin-1-ium-4-yl)benzamido)pyridin-1-ium (PB2+) has been thoroughly investigated. Multiple techniques were employed, including 1H NMR spectroscopy, mass spectrometry, isothermal titration calorimetry (ITC), UV–vis absorption spectrophotometry, and quantum chemistry calculations. The experimental results and calculation analysis have clearly shown that in aqueous solution, the host Q[8] preferentially encapsulates the phenylpyridinium salt moiety of the PB2+ guest within its hydrophobic cavity, forming a 1:2 inclusion complex. Full article
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26 pages, 3758 KiB  
Review
Information Theory Meets Quantum Chemistry: A Review and Perspective
by Yilin Zhao, Dongbo Zhao, Chunying Rong, Shubin Liu and Paul W. Ayers
Entropy 2025, 27(6), 644; https://doi.org/10.3390/e27060644 - 16 Jun 2025
Viewed by 1165
Abstract
In this survey, we begin with a concise introduction to information theory within Shannon’s framework, focusing on the key concept of Shannon entropy and its related quantities: relative entropy, joint entropy, conditional entropy, and mutual information. We then demonstrate how to apply these [...] Read more.
In this survey, we begin with a concise introduction to information theory within Shannon’s framework, focusing on the key concept of Shannon entropy and its related quantities: relative entropy, joint entropy, conditional entropy, and mutual information. We then demonstrate how to apply these information-theoretic tools in quantum chemistry, adopting either classical or quantum formalisms based on the choice of information carrier involved. Full article
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39 pages, 4510 KiB  
Review
Recent Advances in Functionalized Carbon Quantum Dots Integrated with Metal–Organic Frameworks: Emerging Platforms for Sensing and Food Safety Applications
by Arul Murugesan, Huanhuan Li and Muhammad Shoaib
Foods 2025, 14(12), 2060; https://doi.org/10.3390/foods14122060 - 11 Jun 2025
Cited by 1 | Viewed by 1452
Abstract
Carbon quantum dots (CQDs), with their excellent photoluminescence, tunable surface chemistry, and low toxicity, have emerged as versatile nanomaterials in sensing technologies. Meanwhile, metal–organic frameworks (MOFs) possess exceptionally porous architectures and extensive surface areas, and tunable functionalities ideal for molecular recognition and analyte [...] Read more.
Carbon quantum dots (CQDs), with their excellent photoluminescence, tunable surface chemistry, and low toxicity, have emerged as versatile nanomaterials in sensing technologies. Meanwhile, metal–organic frameworks (MOFs) possess exceptionally porous architectures and extensive surface areas, and tunable functionalities ideal for molecular recognition and analyte enrichment. The synergistic integration of CQDs and MOFs has significantly expanded the potential of hybrid materials with enhanced selectivity, sensitivity, and multifunctionality. While several reviews have addressed QD/MOF systems broadly, this review offers a focused and updated perspective on CQDs@MOFs composites specifically tailored for food safety and environmental sensing applications. This review provides a comprehensive analysis of recent advances in the design, synthesis, and surface functionalization of these hybrids, emphasizing the mechanisms of interaction, photophysical behavior, and performance advantages over conventional sensors. Special attention is given to their use in detecting food contaminants such as heavy metals, pesticides, antibiotics, mycotoxins, pathogens, and aromatic compounds. Key strategies to enhance stability, selectivity, and detection limits are highlighted, and current challenges and future directions for practical deployment are critically discussed. Full article
(This article belongs to the Section Food Quality and Safety)
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19 pages, 2929 KiB  
Article
A Chemoinformatics Investigation of Spectral and Quantum Chemistry Patterns for Discovering New Drug Leads from Natural Products Targeting the PD-1/PD-L1 Immune Checkpoint, with a Particular Focus on Naturally Occurring Marine Products
by Henrique Rabelo, Ayana Tsimiante, Yuri Binev and Florbela Pereira
Mar. Drugs 2025, 23(6), 247; https://doi.org/10.3390/md23060247 - 10 Jun 2025
Viewed by 1059
Abstract
(1) Background: Although the field of natural product (NP) drug discovery has been extensively developed, there are still several bottlenecks hindering the development of drugs from NPs. The PD-1/PD-L1 immune checkpoint axis plays a crucial role in immune response regulation. Therefore, drugs targeting [...] Read more.
(1) Background: Although the field of natural product (NP) drug discovery has been extensively developed, there are still several bottlenecks hindering the development of drugs from NPs. The PD-1/PD-L1 immune checkpoint axis plays a crucial role in immune response regulation. Therefore, drugs targeting this axis can disrupt the interaction and enable immune cells to continue setting up a response against the cancer cells. (2) Methods: We have explored the immuno-oncological activity of NPs targeting the PD-1/PD-L1 immune checkpoint by estimating the half maximal inhibitory concentration (IC50) through molecular docking scores and predicting it using machine learning (ML) models. The LightGBM (Light Gradient-Boosted Machine), a tree-based ML technique, emerged as the most effective approach and was used for building the quantitative structure–activity relationship (QSAR) classification model. (3) Conclusions: The model incorporating 570 spectral descriptors from NMR SPINUS was selected for the optimization process, and this approach yielded results for the external test set with a sensitivity of 0.74, specificity of 0.81, overall predictive accuracy of 0.78, and Matthews correlation coefficient (MCC) of 0.55. The strategy used here for estimating the IC50 from docking scores and predicting it through ML models appears to be a promising approach for pure compounds. Nevertheless, further optimization is indicated, particularly through the simulation of the spectra of mixtures by combining the spectra of individual compounds. Full article
(This article belongs to the Special Issue Chemoinformatics for Marine Drug Discovery)
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16 pages, 3759 KiB  
Article
Exploring Single-Molecular Magnets for Quantum Technologies
by Wei Wu, Tianhong Huang, Jianhua Zhu, Taoyu Zou and Hai Wang
Molecules 2025, 30(12), 2522; https://doi.org/10.3390/molecules30122522 - 9 Jun 2025
Viewed by 868
Abstract
A single-molecule magnet (SMM) is a molecule that functions as a magnet. SMMs can be explored not only for emerging technology but also the fundamental science of their quantum nature, nanometer sizes, and their ease of engineering. This review encompasses the state-of-the-art experiments [...] Read more.
A single-molecule magnet (SMM) is a molecule that functions as a magnet. SMMs can be explored not only for emerging technology but also the fundamental science of their quantum nature, nanometer sizes, and their ease of engineering. This review encompasses the state-of-the-art experiments and theories developed so far for SMMs. We briefly explore their experimental synthesis and characterization. In the experimental synthesis, we cover ‘Click Chemistry’ and supramolecular chemistry. The main experimental characterizations comprise superconducting quantum interference devices, electron paramagnetic resonance, neutron scattering, and X-ray magnetic circular dichroism. The theoretical and computational works based on the density functional theory, the post-Hartree–Fock methods, and the theory of open quantum systems are discussed. Moreover, we exemplify the numerous promising research areas for SMMs by discussing quantum technologies. We envision a brilliant future for the fundamental research and emerging applications of SMMs. Full article
(This article belongs to the Section Physical Chemistry)
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21 pages, 3670 KiB  
Article
Quantum Data-Driven Modeling of Interactions and Vibrational Spectral Bands in Cationic Light Noble-Gas Hydrides: [He2H]+ and [Ne2H]+
by María Judit Montes de Oca-Estévez, Álvaro Valdés and Rita Prosmiti
Molecules 2025, 30(11), 2440; https://doi.org/10.3390/molecules30112440 - 3 Jun 2025
Viewed by 496
Abstract
Motivated by two of the most unexpected discoveries in recent years—the detection of ArH+ and HeH+ noble gas molecules in the cold, low-pressure regions of the Universe—we investigate [He2H]+ and [Ne2H]+ as potentially detectable species [...] Read more.
Motivated by two of the most unexpected discoveries in recent years—the detection of ArH+ and HeH+ noble gas molecules in the cold, low-pressure regions of the Universe—we investigate [He2H]+ and [Ne2H]+ as potentially detectable species in the interstellar medium, providing new insights into their energetic and spectral properties. These findings are crucial for advancing our understanding of noble gas chemistry in astrophysical environments. To achieve this, we employed a data-driven approach to construct a high-accuracy machine-learning potential energy surface using the reproducing kernel Hilbert space method. Training and testing datasets are generated via high-level CCSD(T)/CBS[56] quantum chemistry computations, followed by a rigorous validation protocol to ensure the reliability of the potential. The ML-PES is then used to compute vibrational states within the MCTDH framework, and assign spectral transitions for the most common isotopologues of these species in the interstellar medium. Our results are compared with previously recorded values, revealing that both cations exhibit a prominent proton-shuttle motion within the infrared spectral range, making them strong candidates for telescopic observation. This study provides a solid computational foundation, based on rigorous, fully quantum treatments, aiming to assist in the identification of these yet unobserved He/Ne hydride cations in astrophysical environments. Full article
(This article belongs to the Special Issue Advances in Computational Spectroscopy, 2nd Edition)
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