Search Results (85)

Graphene oxide (GO) is a carbon-based nanomaterial explored for agricultural and forestry uses, but plant responses are strongly subject to both the dose and the route of exposure. We summarized recent studies with defined graphene oxide (GO) exposures by seed priming, foliar delivery, and root or soil exposure, while comparing annual crops with woody forest plants. Mechanistic progress points to a shared physicochemical basis: surface oxygen groups and sheet geometry reshape water and ion microenvironments at the soil–seed and soil–rhizosphere interfaces, and many reported shifts in antioxidant enzymes and hormone pathways likely represent downstream stress responses. In crops, low-to-moderate doses most consistently improve germination, root architecture, and tolerance to salinity or drought stress, whereas high doses or prolonged root exposure can cause root surface coating, oxidative injury, and photosynthetic inhibition. In forest plants, evidence remains limited and often relies on seedlings or tissue culture. For forest plants with long life cycles, processes such as soil persistence, aging, and multi-seasonal carry-over become key factors, especially in nurseries and restoration substrates. The available data indicate predominant root retention with generally limited root-to-shoot translocation, so residues in edible and medicinal organs remain insufficiently quantified under realistic-use patterns. This review provides a scenario-based framework for crop- and forestry-specific safe-dose windows and proposes standardized endpoints for long-term fate and ecological risk assessment. Full article

The antimicrobial resistance crisis necessitates novel therapeutics. Selenium nanoparticles (SeNPs) offer promise, but their precise bactericidal mechanism remains poorly defined. This study aimed to define the antibacterial action of SeNPs synthesized via a green method with ascorbic acid and sodium citrate. The resulting SeNPs were monodisperse (17.8 ± 0.66 nm), crystalline, and highly stable (zeta potential: −69.9 ± 4.3 mV), exhibiting potent bactericidal activity against multidrug-resistant E. coli. To generate a mechanistic hypothesis, we integrated phenotypic analyses with a preliminary, single-replicate proteomic profiling. Recognizing this as an exploratory step, we focused our analysis on proteins with the most substantial changes. This revealed a coherent pattern of a targeted dual assault on core cellular processes. The data indicate that SeNPs simultaneously induce oxidative stress while severely depleting key components of the primary antioxidant glutathione system; key detoxification enzymes—glutathione S-transferase and glutaredoxin 2—were depleted 18- to 19-fold, while the stress protein HchA was reduced by over 63-fold. Concurrently, the patterns point toward a crippling of central energy metabolism; iron–sulfur enzymes in the TCA cycle, including aconitate hydratase (8.1-fold decrease) and succinate dehydrogenase (13.9-fold decrease), were severely suppressed, and oxidative phosphorylation was impaired (e.g., 4.7-fold decrease in NADH dehydrogenase subunit B). We propose that this coordinated disruption creates a lethal feedback loop leading to metabolic paralysis. Consequently, this work provides a detailed and testable mechanistic hypothesis for SeNPs action, positioning them as a candidate for a potent, multi-targeted antimicrobial strategy against drug-resistant pathogens. Full article

Weissella viridescens has been proposed as a probiotic candidate, but strain-level multi-omics evidence remains limited. The complete genome of the human-derived W. viridescens strain Wv2365 was sequenced through a hybrid assembly of Illumina and PacBio sequencing reads and compared with eight publicly available W. viridescens genomes. Pangenome analysis and functional annotation were performed, and metabolites were profiled by broadly targeted metabolomic analysis. In addition, the acid and bile tolerance, auto-aggregation and cell surface hydrophobicity, and antioxidant activity of the strain, as well as both in silico and phenotypic safety, were assessed. Wv2365 carries a single chromosome of 1.57 Mb with 41.3% G+C content. The species has an open pangenome with 803 core genes. Genomic and metabolomic features converged on carbohydrate and amino acid metabolism, including glycolysis/tricarboxylic acid (TCA) cycle and arginine pathways, and a carbohydrate-active enzyme (CAZyme) repertoire dominated by glycosyltransferases. In vitro, Wv2365 tolerated pH 3.0 and 0.3% bile, showed auto-aggregation, surface hydrophobicity, and 2,2-diphenyl-1-picrylhydrazyl (DPPH) and hydroxyl radical scavenging. The strain was susceptible to 10 antibiotics tested except for its intrinsic vancomycin non-susceptibility and was non-hemolytic and gelatinase negative. No acquired antimicrobial resistance or virulence genes were found in the genome. These findings indicate that W. viridescens Wv2365 is safe with probiotic traits relevant to gastrointestinal survival, colonization, and redox balance. Full article

Soil salinization poses a significant threat to global agricultural productivity. Salt-tolerant plant growth-promoting bacteria (ST-PGPB) have shown great potential in enhancing crop resilience under saline stress, yet the molecular basis of their intrinsic tolerance remains incompletely understood. To address this, we employed an integrated genomic, transcriptomic, and biochemical approach to investigate the salt tolerance strategies of Pantoea sp. EEL5, an endophytic ST-PGPB isolated from Elytrigia elongata. The results demonstrated that EEL5 exhibited remarkable salt tolerance and efficiently removed Na⁺ via extracellular adsorption and intracellular accumulation. Genomic analysis identified key genes responsible for Na⁺ efflux, betaine synthesis and transport, and typical plant growth-promoting traits. Under salt stress, transcriptomic profiling revealed a marked upregulation of genes involved in Na⁺ extrusion, antioxidant enzymes, betaine biosynthesis and transport, arginine and proline catabolism, TCA cycle, and electron transport chain, concomitant with a downregulation of genes governing energy-intensive flagellar assembly and chemotaxis. These coordinated responses facilitated Na⁺ exclusion, enhanced antioxidant capacity, accumulated compatible solutes (betaine, glutamate, and GABA), increased energy production, and conserved energy via motility reduction, collectively conferring salt tolerance in EEL5. Our findings elucidate the multi-level salt adaptation mechanisms of EEL5 and provide a genetic foundation for a comprehensive understanding of ST-PGPB. Full article

Soil-borne pathogens cause devastating root rot diseases in forest ecosystems, often by inducing dysbiosis in the rhizosphere microbiome. While antagonistic bacteria can suppress disease, their effects frequently extend beyond direct inhibition to include ecological restructuring of resident microbial communities. However, the causal relationships between such microbiome restructuring and disease suppression in tree species remain poorly understood. Here, we show that the antagonistic bacterium B. mojavensis dxk33 effectively suppresses F. solani-induced root rot in C. lanceolata, and that this disease suppression coincides with a partial reversal of pathogen-associated dysbiosis in the rhizosphere. Inoculation with dxk33 significantly promoted plant growth and reduced the disease index by 72.19%, while concurrently enhancing soil nutrient availability and key C-, N- and P-cycling enzyme activities. High-throughput sequencing revealed that dxk33 inoculation substantially reshaped the rhizosphere microbiome, counteracting the pathogen’s negative impact on microbial diversity and coinciding with a shift toward a more stable community structure. Under pathogen stress, dxk33 enriched beneficial bacterial taxa such as Pseudomonas and Sphingomonas and suppressed pathogenic fungi while promoting beneficial fungi such as Mortierella. Linear discriminant analysis and functional prediction further indicated that dxk33 remodeled ecological guilds enriched for mycorrhizal and saprotrophic fungi, and reactivated bacterial metabolic pathways and signaling networks that were suppressed by the pathogen. Taken together, our findings are consistent with a multi-tiered mode of action in which direct antagonism by B. mojavensis dxk33 operates alongside associated changes in the rhizosphere microbiome that resemble a disease-suppressive state, although the present experimental design does not allow a strictly causal role for microbiome reconfiguration in disease suppression to be established. This study provides a mechanistic framework for understanding how microbiome engineering may mitigate soil-borne diseases in perennial trees and highlights the potential of targeted microbial interventions for sustainable forest management. Full article

Double-round bottom fermentation (DRBF) represents an important technological innovation in strong-flavor Baijiu production, yet the microbial succession and metabolic mechanisms underlying this process remain insufficiently understood. In this study, physicochemical analyses combined with multi-omics approaches were employed to elucidate the dynamic variations in physicochemical parameters, volatile compounds, and microbial community structure and function during DRBF, as well as to reconstruct key metabolic pathways involved in fermentation. A total of 153 volatile compounds were identified, with esters, alcohols, and acids as the major components showing distinct accumulation patterns across fermentation stages. High-throughput sequencing detected 505 bacterial and 175 fungal genera, dominated by Lactobacillus, Aspergillus, and Saccharomyces. Functional annotation revealed that metabolic pathways predominated, shifting from energy- and growth-related processes in the early stage to amino acid, fatty acid, and secondary metabolite biosynthesis in the later stage. Reconstruction of metabolic pathways identified 57 key enzymes linking starch degradation, pyruvate metabolism, the tricarboxylic acid (TCA) cycle, and ester biosynthesis, indicating cooperative metabolism among bacteria, yeasts, and molds. These findings elucidate the synergistic metabolic mechanisms of flavor formation during DRBF and provide a scientific basis for optimizing fermentation control and improving Baijiu quality. Full article

Grassland ecosystems play a key role in global carbon and nutrient cycling, yet their productivity is increasingly affected by changing climate, land use, and nutrient inputs. Recent studies have identified plant–microbe interactions as a crucial biological mechanism regulating these changes. However, comprehensive research across different biomes remains insufficient. This review focuses on the functional characteristics and physiological processes of microorganisms to explore how they influence grassland productivity and stability in the context of global change, and proposes quantifiable indicators to improve model predictions. By integrating evidence from alpine, temperate, and arid grasslands, we summarize how microbial carbon use efficiency(CUE), nutrient cycling enzyme activity, and symbiotic capabilities affect plant nutrient acquisition, carbon allocation, and stress resistance. Meta-analytical data indicate that microbial processes can explain a substantial proportion of productivity variation beyond climatic and edaphic factors. We further outline methodological progress in linking molecular mechanisms with ecosystem dynamics through multi-omics, stable isotope tracing, and structural equation modeling. This synthesis highlights that incorporating microbial mechanisms into grassland productivity frameworks enhances predictive accuracy and provides an empirical basis for sustainable management. Across global grasslands, microbial processes account for roughly 40–50% of the explained variance in productivity beyond abiotic drivers, underscoring their predictive value in ecosystem models. Thes study underscores the broader significance of recognizing soil microbes as active drivers of ecosystem function, offering a biological foundation for carbon sequestration and grassland restoration strategies under global environmental change. Full article

Various surfactants have been applied for the remediation of polycyclic aromatic hydrocarbon (PAH)-contaminated environments, but their roles in bioremediation remain controversial. This study focused on rhamnolipid (a typical surfactant) and Burkholderia sp. FM-2 (a high-efficiency phenanthrene-degrading bacterium), investigating its effects on phenanthrene solubilization and biodegradation by analyzing cell surface characteristics and gene expression differences. Results showed that low concentrations of rhamnolipid (20–120 mg/L) promoted phenanthrene degradation, while high concentration (400 mg/L) exerted an inhibitory effect. At 20–56 mg/L, rhamnolipid altered the bacterial surface morphology and functional groups, facilitated lipopolysaccharide release, enhanced cell surface hydrophobicity, and increased zeta potential. When the rhamnolipid concentration was 20 mg/L, the phenanthrene degradation rates of cytoplasmic enzymes, periplasmic enzymes, and extracellular enzymes produced by the bacterium reached over 98% after 15 days of enzyme system culture, demonstrating its role in promoting enzyme production and activity. Transcriptomic analysis revealed that 56 mg/L (1 CMC) rhamnolipid enhanced degradation through multi-pathway regulation of gene expression: upregulating the gene encoding protocatechuate 3,4-dioxygenase to strengthen benzene ring cleavage; increasing the expression of genes related to ABC transporters and protein transport to promote phenanthrene transmembrane transport; and activating genes involved in metabolic processes such as pyruvate metabolism and the tricarboxylic acid (TCA) cycle to enhance central carbon metabolic flux. This regulatory mode optimizes energy supply and redox balance, and indirectly improves phenanthrene bioavailability by modulating membrane structure and function. Full article

Under the dual carbon goals, microgrids face significant challenges in managing multi-energy flow coupling and maintaining operational robustness with high renewable energy penetration. This paper proposes a novel dynamic pressure-aware spatiotemporal optimization dispatch strategy. The strategy is centered on intelligent energy storage and enables proactive energy allocation for critical pressure moments. We designed and validated the strategy under an ideal benchmark scenario with perfect foresight of the operational cycle. This approach demonstrates its maximum potential for spatiotemporal coordination. On this basis, we propose a Multi-Objective Self-Adaptive Hybrid Enzyme Optimization (MOSHEO) algorithm. The algorithm introduces segmented perturbation initialization, nonlinear search mechanisms, and multi-source fusion strategies. These enhancements improve the algorithm’s global exploration and convergence performance. Specifically, in the ZDT3 test, the IGD metric improved by 7.7% and the SP metric was optimized by 63.4%, while the best HV value of 0.28037 was achieved in the UF4 test. Comprehensive case studies validate the effectiveness of the proposed approach under this ideal setting. Under normal conditions, the strategy successfully eliminates power and thermal deficits of 1120.00 kW and 124.46 kW, respectively, at 19:00. It achieves this through optimal quota allocation, which involved allocating 468.19 kW of electricity at 13:00 and 65.78 kW of thermal energy at 18:00. Under extreme weather, the strategy effectively converts 95.87 kW of electricity to thermal energy at 18:00. This conversion addresses a 444.46 kW thermal deficit. Furthermore, the implementation reduces microgrid cluster trading imbalances from 1300 kW to zero for electricity and from 400 kW to 176.34 kW for thermal energy, significantly enhancing system economics and multi-energy coordination efficiency. This research provides valuable insights and methodological support for advanced microgrid optimization by establishing a performance benchmark, with future work focusing on integration with forecasting techniques. Full article

Biochar is increasingly recognized as a multifunctional soil amendment that improves soil fertility, nutrient cycling, and crop productivity. Studies across field, greenhouse, and incubation settings show that biochar enhances nutrient retention, reduces leaching, and regulates carbon, nitrogen, and phosphorus cycling. Its effects are shaped by intrinsic physicochemical properties and interactions with soil minerals, microbial communities, and enzymatic processes. Short-term benefits of biochar applications often include improved nutrient adsorption and water regulation, while long-term applications support stable soil organic matter formation, root development, and fertilizer use efficiency. Biochar also reshapes soil microbial diversity and activity. Beneficial bacterial groups such as Proteobacteria and Actinobacteria, along with fungi such as Mortierella, respond positively, enhancing nitrogen fixation, phosphorus solubilization, and organic matter decomposition. Meanwhile, biochar applications could suppress pathogens. Enzyme activities, including urease and phosphatase, are typically stimulated, driving nutrient mobilization. Yet outcomes remain context-dependent, with biochar feedstock, application rate, soil conditions, and crop type influencing results; excessive use may suppress enzymatic activity, reduce nutrient availability, or shift microbial communities unfavorably. Practically, biochar can improve fertilizer efficiency, restore degraded soils, and reduce greenhouse gas emissions, contributing to climate-smart agriculture. Future work should prioritize long-term, multi-site trials and advanced analytical tools to refine sustainable application strategies. Full article

The growing need for sustainable protein and functional food ingredients has made edible insects stand out as a flexible source of bioactives. Black Soldier Fly larva (BSFL) bioactives, such as chitooligosaccharides (COSs) and peptides, present potential benefits for gut health; nevertheless, their molecular pathways, clinical validation, and commercial scalability have yet to be thoroughly investigated. This study systematically analyzes current progress in BSFL bioactive extraction and characterization, emphasizing enzymatic and thermal processing, controlled enzyme development, and integrated supercritical fluid enzymatic pipelines. We assess preclinical and animal research that illustrates prebiotic modulation of Bifidobacterium, Lactobacillus, and Faecalibacterium populations; antimicrobial peptide-mediated immune signaling; and antioxidant activity. Multi-omics frameworks that connect the microbial metabolism of COS to gut health help us understand how these processes function. A comparison of the regulatory environments for food and feed applications in the EU, North America, and Asia shows that there are gaps in human safety trials, harmonized standards, and techno-economic assessments. Finally, we suggest some next steps: randomized controlled human trials in groups with irritable bowel syndrome (IBS) and metabolic syndrome; standardized data integration pipelines for multi-omics; and life cycle and cost–benefit analyses of modular, vertically integrated BSFL biorefineries with AI-driven reactors, digital twins, and blockchain traceability. Addressing these issues will hasten the conversion of BSFL bioactives into safe, effective, and sustainable functional meals and nutraceuticals. Full article

Oxidative stress induces reactive oxygen species (ROS) accumulation, which compromises sperm DNA integrity, cellular homeostasis, and semen quality in Hainan black goats. This study aimed to mitigate ROS-mediated sperm damage by examining the protective effects of curcumin on metabolic regulation and sperm structural integrity. Semen samples were treated in vitro with varying concentrations of curcumin (5, 25, 50 μmol/L) under oxidative stress conditions. The intermediate concentration (25 μmol/L) was most effective at enhancing sperm quality. Following treatment, sperm motility, membrane integrity, and acrosome stability were significantly improved (p < 0.05), while ROS levels and apoptosis rates decreased. Antioxidant enzyme activities—glutathione peroxidase (GPX, p < 0.05), catalase (CAT, p < 0.05), and superoxide dismutase (SOD, p < 0.05)—were markedly elevated. Metabolomic analysis identified 48 differential metabolites (p < 0.05), including gluconic acid, 3-hydroxybutyric acid, and argininosuccinic acid, which were mainly involved in antioxidant defense, energy metabolism (e.g., the citrate cycle), and osmoregulatory pathways. Lipidomics revealed reduced lipid peroxidation and increased polyunsaturated fatty acid content, correlating with enhanced membrane stability. Transmission and scanning electron microscopy revealed preservation of sperm ultrastructure, with reduced mitochondrial and chromatin damage. Quantitative PCR further indicated curcumin-mediated downregulation of pro-apoptotic genes (BAX, Caspase3, and FAS) and upregulation of the anti-apoptotic gene BCL2 (p < 0.05). These findings demonstrate that Curcumin at 25 μM mitigated menadione-induced oxidative stress in goat sperm in vitro, improving antioxidant status, mitochondrial function and membrane integrity while reducing apoptosis. Multi-omic profiling supported redox and lipid homeostasis restoration. These findings establish proof-of-principle in an acute oxidative model. Full article

The extensive use of antibiotics in animal husbandry leads to the release of unmetabolised residues and the dissemination of antimicrobial resistance genes (ARGs) in manure, posing environmental and public health challenges. Conventional treatment technologies, including hydrolysis, photodegradation, and phytoremediation, are often constrained by incomplete mineralisation, high cost, and environmental variability. Biocatalytic and microbially mediated processes are increasingly recognised as sustainable alternatives. Enzymes, which in clinical contexts confer resistance, can, in environmental matrices, catalyse the dismantling of antibiotic scaffolds, attenuating bioactivity and promoting detoxification. Catalytic classes such as hydrolases, transferases, and oxidoreductases mediate diverse transformations, including hydrolytic cleavage, functional group transfer, and oxidative modification. Microbial consortia and bioaugmentation further enhance biodegradation, while biochar and other amendments reduce ARG persistence. Advances in multi-omics, enzyme engineering, and immobilisation have expanded catalytic repertoires, improved stability, and enabled integration with composting, anaerobic digestion, and hybrid bioprocesses. Nonetheless, incomplete degradation, recalcitrant intermediates, and horizontal gene transfer remain challenges. Importantly, since degradation products may leach into soils and aquatic systems, optimising these processes is critical to prevent residues from entering the water cycle. This review synthesises advances in microbial and enzymatic degradation strategies, highlighting opportunities for sustainable manure management while mitigating water pollution risks. Full article

Amiodarone (AMD) is an effective antiarrhythmic drug whose long-term use is limited by multi-organ toxicities linked to oxidative stress. This review synthesizes current evidence on how AMD induces reactive oxygen species (ROS) generation in vitro and in vivo, and the mechanistic pathways involved. AMD promotes ROS production through both direct and indirect mechanisms. Directly, AMD accumulates in mitochondria and impairs the electron transport chain, leading to electron leakage and superoxide formation. It also undergoes redox cycling, forming radical intermediates that trigger lipid peroxidation and deplete cellular antioxidants. AMD and its metabolites inhibit antioxidant enzymes (SOD, CAT, GPx) expression and/or activities and reduce glutathione level, compounding oxidative injury. Indirectly, AMD activates signaling pathways that exacerbate ROS generation. This compound can induce pro-inflammatory mediators such as TNF-α and modulate nuclear receptors such as AhR, PXR, CAR, and PPARs, altering the expression of metabolic enzymes and endogenous antioxidants. These processes are time- and dose-dependent: short exposures at low concentrations may transiently scavenge radicals, whereas chronic or higher-dose exposures consistently lead to net ROS accumulation. The oxidative effects of AMD vary by tissue and experimental models. In chronic models, organs such as the lung and liver show pronounced ROS-mediated injury, whereas acute or cell-based systems typically exhibit subtler changes. AMD-induced toxicity arises from multifactorial oxidative stress involving mitochondrial dysfunction, increased radical formation, depletion of antioxidant defenses, and activation of pro-oxidant signaling pathways. Recognizing these pathways suggests that antioxidant and mitochondria-targeted co-therapies could ameliorate the side effects of AMD. Full article

Soil organic matter (SOM) decomposition is a critical biogeochemical process that regulates the carbon cycle, nutrient availability, and agricultural sustainability of cropland systems. Recent progress in multi-omics and microbial network analyses has provided us with a better understanding of the decomposition process at different spatial and temporal scales. Climate factors, such as temperature and seasonal variations in moisture, play a critical role in microbial activity and enzyme kinetics, and their impacts are mediated by soil physical and chemical properties. Soil mineralogy, texture, and structure create different soil microenvironments, affecting the connectivity of microbial habitats, substrate availability, and protective mechanisms of organic matter. Moreover, different microbial groups (bacteria, fungi, and archaea) contribute differently to the decomposition of plant residues and SOM. Recent findings suggest the paramount importance of living microbial communities as well as necromass in forming soil organic carbon pools. Microbial functional traits such as carbon use efficiency, dormancy, and stress tolerance are essential drivers of decomposition in the soil. Furthermore, the role of microbial necromass, alongside live microbial communities, in the formation and stabilization of persistent SOM fractions is increasingly recognized. Based on this microbial perspective, feedback between local microbial processes and landscape-scale carbon dynamics illustrates the cross-scale interactions that drive agricultural productivity and regulate soil climate. Understanding these dynamics also highlights the potential for incorporating microbial functioning into sustainable agricultural management, which offers promising avenues for increasing carbon sequestration without jeopardizing soil nutrient cycling. This review explores current developments in intricate relationships between climate, soil characteristics, and microbial communities determining SOM decomposition, serving as a promising resource in organic fertilization and regenerative agriculture. Specifically, we examine how nutrient availability, pH, and oxygen levels critically influence these microbial contributions to SOM stability and turnover. Full article