Search Results (104)

This study presents a quantum chemical investigation of halogen–π interactions involving halogen molecules (F₂, Cl₂, Br₂, and I₂) and a series of π-systems, including benzene, alkenes, and alkynes. Special emphasis is placed on the role of the position of the unsaturated bond (terminal vs. internal) in determining the strength and nature of these interactions. Geometry optimizations and interaction energies were calculated at the wB97X-D3/def2-TZVPP level of theory, with additional validation against CCSD(T)/CBS data. Energy decomposition analysis using SAPT0 and QTAIM analysis were also performed. The results show a clear increase in interaction strength from F₂ to I₂, with interaction energies ranging from −0.47 to −5.61 kcal/mol. The position of the double or triple bond and the local symmetry of the π-system significantly influence interaction energies, with internal and more substituted alkenes and alkynes forming stronger interactions than terminal analogs. SAPT analysis shows that halogen–π interactions are governed by a balance of electrostatic and dispersion contributions, with electrostatics representing the largest attractive term in most cases, whereas dispersion becomes increasingly important for heavier halogens and more extended π-systems and benzene. QTAIM analysis confirms the noncovalent nature of these interactions, with increasing electron density at bond critical points correlating with stronger binding. Full article

Intermolecular interactions play an important role in the formation and stability of co-crystals. In this study, the interaction behaviour of theophylline in co-crystal structures was systematically analysed using data from the Cambridge Structural Database. A total of fifty-three theophylline co-crystal structures were investigated and classified according to their intermolecular interaction motifs. A structured interaction scheme was developed to describe the accessible interaction sites of theophylline, including classical and non-classical hydrogen bonds, as well as halogen bonds and π∙∙∙π interactions. The study revealed theophylline’s high versatility in forming intermolecular interactions, resulting in twenty interaction patterns. Three dominant motifs were identified as occurring most frequently. The results indicate that steric effects influence the accessibility of specific interaction sites, particularly limiting interactions at the carbonyl group located between the two methyl groups. Hirshfeld surface analysis revealed that O∙∙∙H and H∙∙∙H interactions contribute most significantly to the intermolecular interactions in the analysed structures. Full article

A series of Group 10 metal dithiocarbonate complexes [M(S₂COⁱPr)₂] (M = Ni 1, Pd 2, Pt 3) was prepared following procedures from the literature and cocrystallized with the ditopic σ/π-hole donor 1,4-diiodotetrafluorobenzene. Single-crystal X-ray diffraction revealed a consistent I···S halogen bonding motif alongside a remarkable diversity in metal-involving interactions across the Ni–Pd–Pt triad. While nickel(II) exhibits strong electrophilic M···S semicoordination, the palladium(II) center displays ambiphilic behavior, and platinum(II) acts exclusively as a nucleophile via π-hole···M bonding. Comprehensive density functional theory studies, including molecular electrostatic potential (MEP) mapping, quantum theory of atoms in molecules/noncovalent interaction plot analyses, and energy decomposition analysis, were used to quantify this competitive balance. The results demonstrate that the increasing nucleophilicity from Ni to Pt, supported by shifting MEP minima and stronger π-hole stabilization energies, dictates the preference for nucleophilic over electrophilic metal-centered contact. Full article

Phenothiazine is a heteroaromatic molecule capable of various noncovalent interactions, including halogen bonding and π-stacked association. Despite its broad use in functional materials and pharmaceutical ingredients, a systematic comparison of these interaction modes has been lacking. Here, we report a combined experimental and computational study of intermolecular interactions of phenothiazine with a prototypical halogen-bond (HaB) donor (tetrabromomethane), planar π-electron acceptors (tetracyanopyrazine and tetrafluoro-p-benzoquinone), and multifunctional species capable of both interaction types (iodo- and bromo-3,5-dinitrobenzenes). X-ray structural analysis revealed that CBr₄ forms exclusively C–Br···π halogen bonds with the aromatic rings of phenothiazine, whereas all π-acceptors yield alternating donor–acceptor stacks characterized by multiple short contacts indicative of multicenter interactions. Notably, co-crystals of iodo- and bromodinitrobenzenes with phenothiazine display only π-stacked architectures. Density-functional calculations showed that isolated HaB complexes involving N, S, or π sites of phenothiazine possess comparable binding energies (≈−3 kcal mol⁻¹), whereas π-stacked complexes are substantially stronger (≈−9–12 kcal mol⁻¹). QTAIM, NCI, NBO, and energy-decomposition analyses indicated that while amounts of charge transfer in halogen-bonded and π-stacked complexes are comparable, the enhanced stability of the latter originates primarily from a large dispersion contribution. These results rationalize the solid-state preference for π-stacking over halogen bonding in systems where both motifs are accessible and clarify the hierarchy and physical origin of noncovalent interactions involving phenothiazine, providing guidance for the design of supramolecular assemblies and functional materials based on this versatile electron donor. Full article

Four benzyltrimethylammonium (BTMA) salts were successfully prepared: bis(benzyltrimethylammonium) hexachloroplatinate (1), benzyltrimethylammonium tetrachloroaurate (2), bis(benzyltrimethylammonium) tetrachlorocuprate (3), and bis(benzyltrimethylammonium) tetrabromocuprate (4) from benzyltrimethylammonium hydroxide (Triton B). Their crystal structures were determined by single-crystal X-ray diffraction, and the supramolecular architectures were characterized hierarchically. Extended Hirshfeld surface analysis, including enrichment ratio calculations, was performed to evaluate intermolecular interactions. Nonclassical hydrogen bonds, such as C–H^…Cl(Br), involving the anions, contribute to the formation of self-assembled architectures. Additional stabilization arises from π^…π and Cu–Br^…π interactions, particularly in crystals 2 and 4, respectively. Hirshfeld surface analysis showed that H^…H and C^…H/H^…C interactions are the dominant contributors in all crystals. According to enrichment ratio calculations, C^…H/H^…C interactions in 1, 3, and 4; Cl^…H/H^…Cl in 1 and 3; Cu^…H/H^…Cu in 3 and 4; and Br^…H/H^…Br and Br^…C/C^…Br in 4 are statistically favored in the crystal packing. Halogen bonding Cl^…Cl was observed in 1 but does not significantly influence packing. Energy framework calculations indicated that dispersive interactions are favorable in the analyzed crystals. A library of H-bonding supramolecular patterns, including interchangeable synthons, is provided and may guide the rational design of new derivatives with controllable features. Finally, the topology of intermolecular connections and the electronic structure of the benzyltrimethylammonium cation, investigated by quantum-chemical calculations, provide insights into its reactivity. Full article

Wastewater-derived microplastics (WW-MPs) are increasingly recognised as reactive vectors for aromatic organic contaminants (AOCs), yet their role in contaminant fate remains insufficiently constrained. This review synthesises current knowledge on the transformation of microplastics in wastewater treatment plants, including fragmentation, oxidative ageing, additive leaching, and biofilm formation, and links these processes to changes in sorption capacity toward phenols, PAHs and their derivatives, and organochlorine pesticides (OCPs). We summarise the dominant adsorption mechanisms-hydrophobic partitioning, π-π interactions, hydrogen bonding, and electrostatic and, in some cases, halogen bonding-and critically evaluate how wastewater-relevant parameters (pH, ionic strength, dissolved organic matter, temperature, and biofilms) can modulate these interactions. Evidence in the literature consistently shows that ageing and biofouling enhance WW-MP affinity for many AOCs, reinforcing their function as mobile carriers. However, major gaps persist, including limited data on real wastewater-aged MPs, lack of methodological standardisation, and incomplete representation of ageing, competitive sorption, and non-equilibrium diffusion in existing isotherm and kinetic models. We propose key descriptors that should be incorporated into future sorption and fate frameworks and discuss how WW-MP-AOC interactions may influence ecological exposure, bioavailability, and risk assessment. This critical analysis supports more realistic predictions of AOC behaviour in wastewater environments. Full article

Pyruvate:ferredoxin oxidoreductase (PFOR) is a key Achilles’ heel in anaerobic pathogens. We integrate electronic-structure calculations (DFT), cheminformatic QSAR metrics, and residue-resolved docking to distill a concise “recognition code” and translate it into practical design rules. Using nitazoxanide (Nita; ΔG_(bind) ≈ −10.0 kcal·mol⁻¹) as a well-established reference, productive binding requires a conserved triad: a hydrogen-bond donor addressing Thr-997 and Cys-840, a π–π stack with Phe-869, and a recurrent π–σ contact to Thr-997 that orients the scaffold. Deacetylation to tizoxanide unmasks the phenolic donor and raises local electrophilicity, yet it also slightly loosens pocket packing (−9.6 kcal·mol⁻¹). Strategic halogenation introduces a σ-hole interaction near Pro-29, tightening pose geometry without disrupting the donor network; the lead analogue yields −10.1 kcal·mol⁻¹, and two others match the reference by preserving the triad and hydrophobic belt. The result is a minimal, testable recipe—retain the phenolic donor, enforce Thr-997/Cys-840 and Phe-869, and add a calibrated halogen σ-hole—offering falsifiable predictions to surpass nitazoxanide and guiding synthesis and biophysical validation in targeted PFOR inhibition. Full article

Lanthanide-based single-molecule magnets (Ln-SMMs) showing stimuli-responsive changes in photoluminescence (PL) and magnetic properties are attractive for their potential applications in information storage and molecular devices. In this work, we report two mononuclear complexes, namely, Dy(SCN)₂(NO₃)(Cl-depma)₂(4-hpy)₂ (Dy-Cl) and Dy(SCN)₂(NO₃)(Br-depma)₂(4-hpy)₂ (Dy-Br), where X-depma represents 10-X-9-diethylphosphinomethylanthracene (X = Cl, Br) and 4-hpy is 4-hydroxypyridine. Both contain face-to-face π-π-interacted anthracene rings and exhibit yellow-green excimer emission. Unlike the other related Dy–anthracene complexes without a halogen substituent, Dy-Cl and Dy-Br cannot undergo photocycloaddition reaction under UV-light irradiation. However, they exhibited remarkable grinding-induced changes in luminescence. Magnetic studies revealed that Dy-Cl and Dy-Br show SMM behavior under zero dc field with the effective energy barriers (U_eff/k_B) of 259 K and 264 K, respectively. We also investigated the effect of pressure on the magnetic properties of Dy-Br and observed a reduction in the magnetization value, narrowing of the butterfly-shaped hysteresis loop, and acceleration of the magnetic relaxation under 1.09 GPa. The results demonstrate that introducing a halogen substituent into an anthracene group may pose significant influences on the photophysical and photochemical properties of the complexes. In addition, pressure may be a promising external stimulus to modulate the PL and SMM behaviors of Dy–anthracene complexes. Full article

The coordination chemistry of a hydrazinylpyrazine-derived Schiff base ligand (L1), formed in situ from salicylaldehyde and 2-hydrazinopyrazine, with Fe(III) salts has been systematically investigated under varied synthetic conditions. Six discrete Fe(III) complexes (1a–1e and 2) were isolated and structurally characterised via single-crystal X-ray diffraction, revealing diverse coordination geometries ranging from five-coordinate pseudo-trigonal bipyramidal to six-coordinate pseudo-octahedral environments. The supramolecular architectures are governed by a rich interplay of non-covalent interactions, including hydrogen bonding, halogen bonding, and π–π stacking, which significantly influence the crystallisation pathways and final solid-state structures. Continuous shape measure (CShM) analysis highlights substantial geometric distortion in the bis-tridentate complexes, attributed to the steric and electronic constraints imposed by the ligand. Powder X-ray diffraction and infrared spectroscopy confirm the presence of multiple phases in bulk samples, underscoring the kinetic competition between crystallisation and coordination. The results demonstrate that supramolecular stabilisation of monoligated species can kinetically inhibit bis-ligation, with ligand excess and solvent polarity serving as key parameters to direct complex speciation. These findings provide insight into the delicate balance between coordination geometry, ligand strain, and supramolecular assembly in Fe(III) Schiff base complexes. Full article

Hormone-dependent breast cancer, particularly in its treatment-resistant forms, remains a significant therapeutic challenge. In this study, we applied a fully computational strategy to design steroid-based compounds capable of simultaneously targeting three key receptors involved in disease progression: progesterone receptor (PR), estrogen receptor alpha (ER-α), and HER2. Using a robust 3D-QSAR model (R² = 0.86; Q²_LOO = 0.86) built from 52 steroidal structures, we identified molecular features associated with high anticancer potential, specifically increased polarizability and reduced electronegativity. From a virtual library of 271 DFT-optimized analogs, 31 compounds were selected based on predicted potency (pIC₅₀ > 7.0) and screened via molecular docking against PR (PDB 2W8Y), HER2 (PDB 7JXH), and ER-α (PDB 6VJD). Seven candidates showed strong binding affinities (ΔG ≤ −9 kcal/mol for at least two targets), with Estero-255 emerging as the most promising. This compound demonstrated excellent conformational stability, a robust hydrogen-bonding network, and consistent multitarget engagement. Molecular dynamics simulations over 100 nanoseconds confirmed the structural integrity of the top ligands, with low RMSD values, compact radii of gyration, and stable binding energy profiles. Key interactions included hydrophobic contacts, π–π stacking, halogen–π interactions, and classical hydrogen bonds with conserved residues across all three targets. These findings highlight Estero-255, alongside Estero-261 and Estero-264, as strong multitarget candidates for further development. By potentially disrupting the PI3K/AKT/mTOR signaling pathway, these compounds offer a promising strategy for overcoming resistance in hormone-driven breast cancer. Experimental validation, including cytotoxicity assays and ADME/Tox profiling, is recommended to confirm their therapeutic potential. Full article

The crystal structures of the 2-amino-5-halogenopyridines (halogen = Cl (1), Br (2)) and 2,3-diamino-5-halogenopyridines (halogen = Cl (3), Br (4)) were compared with respect to their intermolecular interactions. An ab-initio-based method for evaluating the interaction energies between molecules was employed to estimate the driving forces of crystal formation. As a result, regularities in crystal structure organization were identified. For compounds 1 and 2, a dimeric building unit is formed by two N–H…N_pyr hydrogen bonds. These dimers are further connected to neighboring units by C–H…π, C–H…N, N…X (X = Cl, Br), and non-specific interactions. The aforementioned intermolecular interactions give rise to layered structures that are similar but not isotypical. No significant contributions from π–π or N–H…N(H₂) interactions are observed in 1 and 2. The structures of 3 and 4 are isotypical and crystallize in the non-centrosymmetric space group P2₁2₁2₁. The most important intermolecular interactions are N–H…N_pyr, N–H…N(H₂), and stacking interactions. These interactions lead to identical columnar-layered structures in both 3 and 4. No significant contributions from halogen bonds of the type N…X (X = Cl, Br) are found in 3 and 4. Full article

Type 2 diabetes mellitus (T2DM) demands safer and more effective therapies to control postprandial hyperglycemia. Here, we report the synthesis and in vitro evaluation of ten salicylic acid-derived Schiff base derivatives (4a–4j) as α-glucosidase inhibitors. Compounds 4e, 4g, 4i, and 4j exhibited potent enzyme inhibition, with IC₅₀ values ranging from 14.86 to 18.05 µM—substantially better than acarbose (IC₅₀ = 45.78 µM). Molecular docking and 500 ns molecular dynamics simulations revealed stable enzyme–ligand complexes driven by π–π stacking, halogen bonding, and hydrophobic interactions. Density Functional Theory (DFT) calculations and molecular electrostatic potential (MEP) maps highlighted key electronic factors, while ADMET analysis confirmed favorable drug-like properties and reduced nephrotoxicity. Structure–activity relationship (SAR) analysis emphasized the importance of halogenation and aromaticity in enhancing bioactivity. Full article

A series of 4-aminoquinoline derivatives were prepared using a microwave-assisted method. The reactions were initially carried out on a small scale and subsequently scaled up using a sealed tube. Heating the reactions to 90–150 °C for 90–120 minutes obtained products with up to 95% yields. Structural analysis and characterization were achieved using FT-IR, ¹H- and ¹³C-NMR spectroscopy and HR-MS. Four compounds displayed low-to-moderate antibacterial activity, with 6-chlorocyclopentaquinolinamine (7b) exhibiting potent inhibition against MRSA (MIC = 0.125 mM) and 2-fluorocycloheptaquinolinamine (9d) showing activity against S. pyogenes (MIC = 0.25 mM). Structure–activity relationship (SAR) docking studies within the Penicillin Binding Protein (PBP2a) binding site (PDB: 4DK1) showed that compounds 7b and 5b (7-chlorophenylquinolinamine) bind through hydrophobic interactions (ALA601, ILE614), hydrogen bonding (GLN521), and halogen contacts (TYR519, THR399). Compound 7b demonstrated enhanced MRSA inhibition due to additional π-alkyl interactions and optimal docking parameters. Conversely, the bulky structure of 9d may explain its weaker activity as it likely hindered binding to the target site. This paper highlights the role of structural features in antibacterial efficacy and guides the future optimization of 4-aminoquinoline derivatives. Full article

Microplastics can transfer antibiotics in water through adsorption and desorption, causing adverse effects on the water environment. Therefore, understanding the interaction between microplastics and antibiotics is important in order to assess their impact on the environment. In this study, the adsorption–desorption behaviors of two commonly used antibiotics [enrofloxacin (ENR) and trimethoprim (TMP)] in aquaculture and their interactions with three typical microplastics [polystyrene (PS), polyvinyl chloride (PVC), and polyethylene (PE)] were investigated through laboratory experiments. The results showed that the adsorption capacity of the three microplastics was 1.229–1.698 mg/g for ENR and 1.110–1.306 mg/g for TMP, correlating with the octanol–water partition coefficients ($\log {\mathrm{K}}_{ow}$) of antibiotics. Due to the larger specific surface areas and special functional groups of microplastics, the antibiotic adsorption capacity of PS and PVC was higher than that of PE. The adsorption behavior followed pseudo-second-order kinetics and a Freundlich isotherm model, indicating a non-uniform surface with multilayer adsorption. A thermodynamic analysis showed that these were all spontaneous endothermic adsorptions. X-ray photoelectron spectroscopy (XPS) and Fourier-transform infrared spectroscopy (FTIR) analyses indicated that the adsorption mechanism was dominated by physical adsorption, involving π–π conjugation, halogen bonds, hydrogen bonding, and electrostatic interactions. High salinity and alkaline environments were conducive to desorption, and the ENR and TMP desorption rates of the microplastics ranged from 20.65% to 24.95%. This indicates that microplastics adsorbed with antibiotics will desorb antibiotics when entering the seawater system, thereby affecting marine ecosystems. These findings reveal the interaction mechanism between microplastics and aquaculture antibiotics in aqueous systems, providing theoretical support for environmental protection and sustainable development. Full article

Three halo-substituted phenyl-quinazolinone derivatives were prepared and structurally characterized [1 = 3-(4-chlorophenyl)-6-iodo-2-methylquinazolin-4(3H)-one, 2 = 6-iodo-3-(4-methoxyphenyl)-2-methylquinazolin-4(3H)-one, and 3 = 7-chloro-2-methyl-3-[4-(trifluoromethoxy)phenyl]quinazolin-4(3H)-one)] in order to explore the relationship between structure and melting point in this group of compounds. Depending on the compound, molecules are interconnected by weak π∙∙∙π interactions, have I···Cl or Cl···Cl halogen bonding, or primarily form C–H∙∙∙N, C–H∙∙∙O, and π∙∙∙π interactions (no halogen bonding). The presence of the OCF₃ group leads to interactions between fluorine atoms that are shorter than the sum of the van der Waals radius for fluorine, suggesting that these interactions contribute to the overall lattice energy. The sequence of melting points cannot be fully explained by intermolecular interactions present in the solid state (enthalpy factor). To address this, a concept related to entropy called the functional group rotation influence, which relates to a decrease in fusion entropy caused by the rotational freedom of polyatomic groups, was introduced. Analysis of previously synthesized 3-phenylquinazolinones showed that the compounds with the highest melting point are the quinazoline-substituted and phenyl-nitro-substituted ones. Among halo-phenyl-substituted compounds, the melting point follows the sequence ortho < meta < para. Regarding the halogen atom type, the order of melting points is Cl ≈ Br > F > I for enantiopure and Br > I ≈ Cl > F for racemic compounds. Also, the melting point order correlates to halogen bond energy (I > Br > Cl > F) only when the geometry and energy of these interactions are favorable. Full article