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Search Results (1,008)

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Keywords = chlorophyll a (Chl a)

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17 pages, 5553 KiB  
Article
Effects of Interspecific Competition on Habitat Shifts of Sardinops melanostictus (Temminck et Schlegel, 1846) and Scomber japonicus (Houttuyn, 1782) in the Northwest Pacific
by Siyuan Liu, Hanji Zhu, Jianhua Wang, Famou Zhang, Shengmao Zhang and Heng Zhang
Biology 2025, 14(8), 968; https://doi.org/10.3390/biology14080968 (registering DOI) - 1 Aug 2025
Viewed by 172
Abstract
As economically important sympatric species in the Northwest Pacific, the Japanese sardine (Sardinops melanostictus) and Chub mackerel (Scomber japonicus) exhibit significant biological interactions. Understanding the impact of interspecies competition on their habitat dynamics can provide crucial insights for the [...] Read more.
As economically important sympatric species in the Northwest Pacific, the Japanese sardine (Sardinops melanostictus) and Chub mackerel (Scomber japonicus) exhibit significant biological interactions. Understanding the impact of interspecies competition on their habitat dynamics can provide crucial insights for the sustainable development and management of these interconnected species resources. This study utilizes fisheries data of S. melanostictus and S. japonicus from the Northwest Pacific, collected from June to November between 2017 and 2020. We integrated various environmental parameters, including temperature at different depths (0, 50, 100, 150, and 200 m), eddy kinetic energy (EKE), sea surface height (SSH), chlorophyll-a concentration (Chl-a), and the oceanic Niño index (ONI), to construct interspecific competition species distribution model (icSDM) for both species. We validated these models by overlaying the predicted habitats with fisheries data from 2021 and performing cross-validation to assess the models’ reliability. Furthermore, we conducted correlation analyses of the habitats of these two species to evaluate the impact of interspecies relationships on their habitat dynamics. The results indicate that, compared to single-species habitat models, the interspecific competition species distribution model (icSDM) for these two species exhibit a significantly higher explanatory power, with R2 values increasing by up to 0.29; interspecific competition significantly influences the habitat dynamics of S. melanostictus and S. japonicus, strengthening the correlation between their habitat changes. This relationship exhibits a positive correlation at specific stages, with the highest correlations observed in June, July, and October, at 0.81, 0.80, and 0.88, respectively; interspecific competition also demonstrates stage-specific differences in its impact on the habitat dynamics of S. melanostictus and S. japonicus, with the most pronounced differences occurring in August and November. Compared to S. melanostictus, interspecific competition is more beneficial for the expansion of the optimal habitat (HIS ≥ 0.6) for S. japonicus and, to some extent, inhibits the habitat expansion of S. melanostictus. The variation in migratory routes and predatory interactions (with larger individuals of S. japonicus preying on smaller individuals of S. melanostictus) likely constitutes the primary factors contributing to these observed differences. Full article
(This article belongs to the Special Issue Adaptation of Living Species to Environmental Stress)
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13 pages, 2070 KiB  
Article
Optimizing Row Spacing and Seeding Rate for Yield and Quality of Alfalfa in Saline–Alkali Soils
by Jiaqi Shi, Nan Xie, Lifeng Zhang, Xuan Pan, Yanling Wang, Zhongkuan Liu, Zhenyu Liu, Jianfei Zhi, Wenli Qin, Wei Feng, Guotong Sun and Hexing Yu
Agronomy 2025, 15(8), 1828; https://doi.org/10.3390/agronomy15081828 - 28 Jul 2025
Viewed by 265
Abstract
To elucidate the photosynthetic physiological mechanisms influencing alfalfa (Medicago sativa L.) yield and quality under varying planting densities, the cultivar ‘Zhongmu No.1’ was used as experimental material. The effects of different row spacing (R1, R2, R3) and seeding rate (S1, S2, S3, [...] Read more.
To elucidate the photosynthetic physiological mechanisms influencing alfalfa (Medicago sativa L.) yield and quality under varying planting densities, the cultivar ‘Zhongmu No.1’ was used as experimental material. The effects of different row spacing (R1, R2, R3) and seeding rate (S1, S2, S3, S4, S5) combinations on chlorophyll content (ChlM), nitrogen flavonol index (NFI), chlorophyll fluorescence parameters, forage quality, and hay yield were systematically analyzed. Results showed that alfalfa under R1S3 treatment achieved peak values for ChIM, NFI, EE, and hay yield, whereas R1S4 treatment yielded the highest Fv/Fm and CP content. Redundancy analysis further indicated that yield was most strongly associated with ChlM, NFI, Y (II), and qP. Y (II), and qP significantly influenced alfalfa forage quality, exerting negative effects on ADF and NDF, while demonstrating positive effects on CP and EE. In conclusion, narrow row spacing (15 cm) with moderate seeding rates (22.5–30 kg·hm−2) optimizes photosynthetic performance while concurrently enhancing both productivity and forage quality in alfalfa cultivated, establishing a theoretical foundation for photosynthetic regulation in high-quality and high-yield alfalfa cultivation. Full article
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31 pages, 5037 KiB  
Article
Evaluation and Improvement of Ocean Color Algorithms for Chlorophyll-a and Diffuse Attenuation Coefficients in the Arctic Shelf
by Yubin Yao, Tao Li, Qing Xu, Xiaogang Xing, Xingyuan Zhu and Yubao Qiu
Remote Sens. 2025, 17(15), 2606; https://doi.org/10.3390/rs17152606 - 27 Jul 2025
Viewed by 445
Abstract
Arctic shelf waters exhibit high optical variability due to terrestrial inputs and elevated colored dissolved organic matter (CDOM) concentrations, posing significant challenges for the accurate retrieval of chlorophyll-a (Chl-a) and downwelling diffuse attenuation coefficients (Κd(λ) [...] Read more.
Arctic shelf waters exhibit high optical variability due to terrestrial inputs and elevated colored dissolved organic matter (CDOM) concentrations, posing significant challenges for the accurate retrieval of chlorophyll-a (Chl-a) and downwelling diffuse attenuation coefficients (Κd(λ)). These retrieval biases contribute to substantial uncertainties in estimates of primary productivity and upper-ocean heat flux in the Arctic Ocean. However, the performance and constraints of existing ocean color algorithms in Arctic shelf environments remain insufficiently characterized, particularly under seasonally variable and optically complex conditions. In this study, we present a systematic multi-year evaluation of commonly used empirical and semi-analytical ocean color algorithms across the western Arctic shelf, based on seven expeditions and 240 in situ observation stations. Building on these evaluations, regionally optimized retrieval schemes were developed to enhance algorithm performance under Arctic-specific bio-optical conditions. The proposed OCx-AS series for Chl-a and Κd-DAS models for Κd(λ) significantly reduce retrieval errors, achieving RMSE improvements of over 50% relative to global standard algorithms. Additionally, we introduce QAA-LS, a modified semi-analytical model specifically adapted for the Laptev Sea, which addresses the strong absorption effects of CDOM and corrects the significant overestimation observed in previous QAA versions. Full article
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19 pages, 6150 KiB  
Article
Evaluation of Eutrophication in Small Reservoirs in Northern Agricultural Areas of China
by Qianyu Jing, Yang Shao, Xiyuan Bian, Minfang Sun, Zengfei Chen, Jiamin Han, Song Zhang, Shusheng Han and Haiming Qin
Diversity 2025, 17(8), 520; https://doi.org/10.3390/d17080520 - 26 Jul 2025
Viewed by 178
Abstract
Small reservoirs have important functions, such as water resource guarantee, flood control and drought resistance, biological habitat and maintaining regional economic development. In order to better clarify the impact of agricultural activities on the nutritional status of water bodies in small reservoirs, zooplankton [...] Read more.
Small reservoirs have important functions, such as water resource guarantee, flood control and drought resistance, biological habitat and maintaining regional economic development. In order to better clarify the impact of agricultural activities on the nutritional status of water bodies in small reservoirs, zooplankton were quantitatively collected from four small reservoirs in the Jiuxianshan agricultural area of Qufu, Shandong Province, in March and October 2023, respectively. The physical and chemical parameters in sampling points were determined simultaneously. Meanwhile, water samples were collected for nutrient salt analysis, and the eutrophication of water bodies in four reservoirs was evaluated using the comprehensive nutrient status index method. The research found that the species richness of zooplankton after farming (100 species) was significantly higher than that before farming (81 species) (p < 0.05). On the contrary, the dominant species of zooplankton after farming (7 species) were significantly fewer than those before farming (11 species). The estimation results of the standing stock of zooplankton indicated that the abundance and biomass of zooplankton after farming (92.72 ind./L, 0.13 mg/L) were significantly higher than those before farming (32.51 ind./L, 0.40 mg/L) (p < 0.05). Community similarity analysis based on zooplankton abundance (ANOSIM) indicated that there were significant differences in zooplankton communities before and after farming (R = 0.329, p = 0.001). The results of multi-dimensional non-metric sorting (NMDS) showed that the communities of zooplankton could be clearly divided into two: pre-farming communities and after farming communities. The Monte Carlo test results are as follows (p < 0.05). Transparency (Trans), pH, permanganate index (CODMn), electrical conductivity (Cond) and chlorophyll a (Chl-a) had significant effects on the community structure of zooplankton before farming. Total nitrogen (TN), total phosphorus (TP) and electrical conductivity (Cond) had significant effects on the community structure of zooplankton after farming. The co-linearity network analysis based on zooplankton abundance showed that the zooplankton community before farming was more stable than that after farming. The water evaluation results based on the comprehensive nutritional status index method indicated that the water conditions of the reservoirs before farming were mostly in a mild eutrophic state, while the water conditions of the reservoirs after farming were all in a moderate eutrophic state. The results show that the nutritional status of small reservoirs in agricultural areas is significantly affected by agricultural activities. The zooplankton communities in small reservoirs underwent significant changes driven by alterations in the reservoir water environment and nutritional status. Based on the main results of this study, we suggested that the use of fertilizers and pesticides should be appropriately reduced in future agricultural activities. In order to better protect the water quality and aquatic ecology of the water reservoirs in the agricultural area. Full article
(This article belongs to the Special Issue Diversity and Ecology of Freshwater Plankton)
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24 pages, 2496 KiB  
Article
Zinc and Selenium Biofortification Modulates Photosynthetic Performance: A Screening of Four Brassica Microgreens
by Martina Šrajer Gajdošik, Vesna Peršić, Anja Melnjak, Doria Ban, Ivna Štolfa Čamagajevac, Zdenko Lončarić, Lidija Kalinić and Selma Mlinarić
Agronomy 2025, 15(8), 1760; https://doi.org/10.3390/agronomy15081760 - 23 Jul 2025
Viewed by 316
Abstract
Microgreens, having short growth cycles and efficient nutrient uptake, are ideal candidates for biofortification. This study investigated the effects of selenium (Se) and zinc (Zn) on photosynthetic performance in four hydroponically grown Brassica microgreens (broccoli, pak choi, kohlrabi, and kale), using direct and [...] Read more.
Microgreens, having short growth cycles and efficient nutrient uptake, are ideal candidates for biofortification. This study investigated the effects of selenium (Se) and zinc (Zn) on photosynthetic performance in four hydroponically grown Brassica microgreens (broccoli, pak choi, kohlrabi, and kale), using direct and modulated chlorophyll a fluorescence and chlorophyll-to-carotenoid ratios (Chl/Car). The plants were treated with Na2SeO4 at 0 (control), 2, 5, and 10 mg/L or ZnSO4 × 7H2O at 0 (control), 5, 10, and 20 mg/L. The results showed species-specific responses with Se or Zn uptake. Selenium enhanced photosynthetic efficiency in a dose-dependent manner for most species (8–26% on average compared to controls). It increased the plant performance index (PItot), particularly in pak choi (+62%), by improving both primary photochemistry and inter-photosystem energy transfer. Kale and kohlrabi exhibited high PSII-PSI connectivity for efficient energy distribution, with increased cyclic electron flow around PSI and reduced Chl/Car up to 8.5%, while broccoli was the least responsive. Zinc induced variable responses, reducing PItot at lower doses (19–23% average decline), with partial recovery at 20 mg/L (9% average reduction). Broccoli exhibited higher susceptibility, with inhibited QA re-oxidation, low electron turnover due to donor-side restrictions, and increased pigment ratio (+3.6%). Kohlrabi and pak choi tolerated moderate Zn levels by redirecting electron flow, but higher Zn levels impaired PSII and PSI function. Kale showed the highest tolerance, maintaining stable photochemical parameters and total electron flow, with increased pigment ratio (+4.5%) indicating better acclimation. These results highlight the beneficial stimulant role of Se and the dual essential/toxic nature of Zn, thus emphasizing genotype and dose-specific optimizations for effective biofortification. Full article
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15 pages, 12546 KiB  
Article
Retrieval of Chlorophyll-a Concentration in Nanyi Lake Using the AutoGluon Framework
by Weibin Gu, Ji Liang, Lian Yang, Shanshan Guo and Ruixin Jia
Water 2025, 17(15), 2190; https://doi.org/10.3390/w17152190 - 23 Jul 2025
Viewed by 247
Abstract
The chlorophyll-a (Chl-a) concentration in lakes is a crucial parameter for monitoring water quality and assessing phytoplankton abundance. However, accurately retrieving Chl-a concentrations remains a significant challenge in remote sensing. To address the limitations of existing methods in terms of modeling efficiency and [...] Read more.
The chlorophyll-a (Chl-a) concentration in lakes is a crucial parameter for monitoring water quality and assessing phytoplankton abundance. However, accurately retrieving Chl-a concentrations remains a significant challenge in remote sensing. To address the limitations of existing methods in terms of modeling efficiency and adaptability, this study focuses on Lake Nanyi in Anhui Province. By integrating Sentinel-2 satellite imagery with in situ water quality measurements and employing the AutoML framework AutoGluon, a Chl-a inversion model based on narrow-band spectral features is developed. Feature selection and model ensembling identify bands B6 (740 nm) and B7 (783 nm) as the optimal combination, which are then applied to multi-temporal imagery from October 2022 to generate spatial mean distributions of Chl-a in Lake Nanyi. The results demonstrate that the AutoGluon framework significantly outperforms traditional methods in both model accuracy (R2: 0.94, RMSE: 1.67 μg/L) and development efficiency. The retrieval results reveal spatial heterogeneity in Chl-a concentration, with higher concentrations observed in the southern part of the western lake and the western side of the eastern lake, while the central lake area exhibits relatively lower concentrations, ranging from 3.66 to 21.39 μg/L. This study presents an efficient and reliable approach for lake ecological monitoring and underscores the potential of AutoML in water color remote sensing applications. Full article
(This article belongs to the Section Water Resources Management, Policy and Governance)
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14 pages, 1990 KiB  
Article
Hierarchic Branch Morphology, Needle Chlorophyll Content, and Needle and Branch Non-Structural Carbohydrate Concentrations (NSCs) Imply Young Pinus koraiensis Trees Exhibit Diverse Responses Under Different Light Conditions
by Bei Li, Wenkai Li, Sudipta Saha, Xiao Ma, Yang Liu, Haibo Wu, Peng Zhang and Hailong Shen
Horticulturae 2025, 11(7), 844; https://doi.org/10.3390/horticulturae11070844 - 17 Jul 2025
Viewed by 288
Abstract
Research on young trees’ adaptation to shade has predominantly focused on leaf-level responses, overlooking critical structural and functional adaptations in branch systems. In this study, we address this gap by investigating hierarchical branch morphology–physiology integration in 20-year-old Pinus koraiensis specimens across four distinct [...] Read more.
Research on young trees’ adaptation to shade has predominantly focused on leaf-level responses, overlooking critical structural and functional adaptations in branch systems. In this study, we address this gap by investigating hierarchical branch morphology–physiology integration in 20-year-old Pinus koraiensis specimens across four distinct light conditions classified by photosynthetic photon flux density (PPFD): three in the understory (low light, LL: 0–25 μmol/m2/s; moderate light, ML: 25–50 μmol/m2/s; and high levels of light, HL: 50–100 μmol/m2/s) and one under full light as a control (FL: 1300–1700 μmol/m2/s). We measured branch base diameter, length, and angle as well as chlorophyll and NSCs content in branches and needles. Branch base diameter and length were more than 1.5-fold higher in the FL Korean pine trees compared to the understory-grown ones, while the branching angle and ratio in the LL Korean pine trees were more than two times greater than those in the FL trees. As light levels increased, Chlorophyll a and b and total chlorophyll (Chla, Chlb, and Chl) concentrations in the needles all significantly decreased. Starch, glucose, and NSC (Starch + Soluble Sugars) concentrations in both needles and branches were the highest in the trees under FL and lowest under ML (except for soluble sugars in branches). Understory young P. koraiensis trees morphologically and physiologically adapt to limited light conditions, growing to be more horizontal, synthesizing more chlorophyll in needles, and attempting to increase their light-foraging ability. We recommend gradually expanding growing spaces to increase light availability for 20-year-old Korean pine trees grown under canopy level. Full article
(This article belongs to the Section Floriculture, Nursery and Landscape, and Turf)
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20 pages, 2415 KiB  
Article
Intercropping with Gramineous Plants in Nutrient Solutions as a Tool to Optimize the Use of Iron in Brassica oleracea
by Teresa Saavedra, Maribela Pestana, João Costa, Paula Gonçalves, David Fangueiro, José Paulo Da Silva and Pedro José Correia
Plants 2025, 14(14), 2215; https://doi.org/10.3390/plants14142215 - 17 Jul 2025
Viewed by 305
Abstract
This study aimed to evaluate the impact of intercropping Brassica oleracea. with three perennial grasses (Poa pratensis L., Lolium perenne L., and Festuca rubra L.) under varying levels of iron (Fe) availability (Fe0, Fe1 and Fe5) in nutrient solutions. The research [...] Read more.
This study aimed to evaluate the impact of intercropping Brassica oleracea. with three perennial grasses (Poa pratensis L., Lolium perenne L., and Festuca rubra L.) under varying levels of iron (Fe) availability (Fe0, Fe1 and Fe5) in nutrient solutions. The research focused on biomass accumulation, photosynthetic efficiency, root development, nutrient uptake, and oxidative stress response. In the absence of Fe, Brassica sp. exhibited chlorosis, reduced biomass, and increased ferric chelate reductase (FCR) enzyme activity as an adaptive response. Brassica plants intercropped with Poa sp. maintained higher chlorophyll (Chl) levels and photosystem II efficiency (Fv/Fm values), mitigating Fe deficiency effects. Catalase activity and polyphenol production varied with intercropping species, indicating differential stress response mechanisms. Intercropping improved Zn, Mn, and P accumulation, with Poa sp. facilitating greater Zn and Mn uptake. Intercropping Brassica sp. with specific grass species offers potential agronomic benefits by improving Fe use efficiency, mitigating stress, and enhancing nutrient uptake. Future research should focus on optimizing intercropping combinations for sustainable agricultural practices. Full article
(This article belongs to the Section Plant Nutrition)
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18 pages, 2311 KiB  
Article
A Rapid Method for Identifying Plant Oxidative Stress and Implications for Riparian Vegetation Management
by Mizanur Rahman, Takashi Asaeda, Kiyotaka Fukahori, Md Harun Rashid, Hideo Kawashima, Junichi Akimoto and Refah Tabassoom Anta
Environments 2025, 12(7), 247; https://doi.org/10.3390/environments12070247 - 17 Jul 2025
Viewed by 585
Abstract
Native and invasive plants of the riverain region undergo a range of environmental stresses that result in excess reactive oxygen species (ROS). Hydrogen peroxide (H2O2) is a relatively stable and quickly quantifiable way among different ROS. The herbaceous species [...] Read more.
Native and invasive plants of the riverain region undergo a range of environmental stresses that result in excess reactive oxygen species (ROS). Hydrogen peroxide (H2O2) is a relatively stable and quickly quantifiable way among different ROS. The herbaceous species including Artemisia princeps, Sicyos angulatus, and Solidago altissima were selected. The H2O2 and photosynthetic pigment of leaves were measured, soil samples were analyzed to quantify macronutrients such as total nitrogen (TN), total phosphorus (TP), and soil moisture, and photosynthetic photon flux density (PPFD) was also recorded at different observed sites of Arakawa Tarouemon, Japan. The H2O2 concentration of S. altissima significantly increased with high soil moisture content, whereas A. Princeps and S. angulatus significantly decreased with high soil moisture. In each species, H2O2 was negatively correlated with chlorophyll a (chl a) and chlorophyll b (chl a). When comparing different parameters involving TN, TP, PPFD, and soil moisture content with H2O2 utilizing the general additive model (GAM), only soil moisture content is significantly correlated with H2O2. Hence, this study suggests that H2O2 would be an effective biomarker for quantifying environmental stress within a short time, which can be applied for riparian native and invasive plant species vegetation regulation. Full article
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17 pages, 4334 KiB  
Article
Responses of Different Temperature-Acclimated Diatom Species, Smaller Thalassiosira pseudonana and Larger Thalassiosira rotula, to Increased Ambient Temperature
by Wei Zhao, Jihua Liu, Hui Song, Bokun Chen, Hongli Ji, Xue Yang and Gang Li
Microorganisms 2025, 13(7), 1652; https://doi.org/10.3390/microorganisms13071652 - 12 Jul 2025
Viewed by 343
Abstract
The acute rise in temperature due to marine heatwaves has a strong impact on marine phytoplankton. To determine whether these effects depend on ambient temperature and cell size, we acclimated two diatom species, smaller Thalassiosira pseudonana (Hasle and Heimdal, 1970) and larger Thalassiosira [...] Read more.
The acute rise in temperature due to marine heatwaves has a strong impact on marine phytoplankton. To determine whether these effects depend on ambient temperature and cell size, we acclimated two diatom species, smaller Thalassiosira pseudonana (Hasle and Heimdal, 1970) and larger Thalassiosira rotula (Meunier, 1910), at low (LAT), medium (MAT) and high ambient temperatures (HAT) and examined their physiochemical and transcriptional responses to temperature rise (AT + 6 °C). The specific growth rate (µ) of smaller cells was increased by 32% due to temperature rise at LAT, but decreased by 13% at HAT, with the stimulatory and inhibitory extent being ~50% less than that of larger cells. At LAT, chlorophyll a (Chl a), carotenoid (Car) and carbon (POC) contents were increased in smaller cells due to temperature rise, but were decreased in larger cells; at HAT, Chl a and Car were increased in both smaller and larger cells and POC was increased in only smaller cells. At LAT, temperature rise led to a disproportionate increase in photosynthesis and dark respiration, resulting in an increase in carbon utilization efficiency (CUE) in smaller cells and a decrease in CUE in larger cells; at HAT, there was a decrease in CUE in both the smaller and larger cells, but to a lesser extent in the former than in the latter. Our results also show that smaller cells cope with the acute temperature rise mainly by strengthening their enzyme activity (e.g., the antioxidant system) and conservatively regulating their metabolism, while larger cells mainly regulate their photosynthetic and central carbon metabolism. Moreover, larger cells can outperform their smaller counterparts when the temperature rise occurs at lower ambient temperature. Full article
(This article belongs to the Section Environmental Microbiology)
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20 pages, 2942 KiB  
Article
Zooplankton Community Responses to Eutrophication and TOC: Network Clustering in Regionally Similar Reservoirs
by Yerim Choi, Hye-Ji Oh, Geun-Hyeok Hong, Dae-Hee Lee, Jeong-Hui Kim, Sang-Hyeon Park, Jung-Ho Yun and Kwang-Hyeon Chang
Water 2025, 17(14), 2051; https://doi.org/10.3390/w17142051 - 9 Jul 2025
Viewed by 273
Abstract
This study analyzed the relationship between zooplankton communities and water quality characteristics, with a focus on total organic carbon (TOC), in 22 reservoirs within the Geum River basin that share similar climatic conditions but exhibit varying levels of pollution. Across all reservoirs, zooplankton [...] Read more.
This study analyzed the relationship between zooplankton communities and water quality characteristics, with a focus on total organic carbon (TOC), in 22 reservoirs within the Geum River basin that share similar climatic conditions but exhibit varying levels of pollution. Across all reservoirs, zooplankton community structures showed the highest correlations with TOC, suspended solids (SS), chlorophyll-a (Chl-a), and Secchi depth (SD), with stronger associations observed for rotifers and cladocerans compared to copepods. The classification of zooplankton community composition patterns, followed by an analysis of their associations with TOC concentrations, revealed relatively distinct differences between high-TOC and low-TOC reservoirs, indicating that TOC functions as a key determinant of community composition. Meanwhile, network analysis based on overall water quality characteristics indicated that patterns of water quality similarity among zooplankton-based communities differed somewhat from those based solely on TOC concentrations, suggesting that TOC may exert an independent influence on zooplankton community structure. In high-TOC reservoirs, typical eutrophic characteristics—such as elevated chlorophyll-a, total phosphorus, and suspended solids, along with reduced water transparency—were observed, accompanied by higher zooplankton abundance and a greater proportion of rotifers within the community. In contrast, low-TOC reservoirs, despite exhibiting no marked differences in other water quality variables, showed higher diversity of cladocerans alongside rotifers, further supporting the independent role of TOC in shaping zooplankton community structures. These findings highlight TOC not only as a general indicator of pollution but also as an ecologically significant factor influencing zooplankton community composition and carbon dynamics in reservoir ecosystems. They suggest that TOC should be considered a key variable in future assessments and management of lentic ecosystems. Full article
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24 pages, 8603 KiB  
Article
Evaluating the Potential of Improving In-Season Potato Nitrogen Status Diagnosis Using Leaf Fluorescence Sensor as Compared with SPAD Meter
by Seiya Wakahara, Yuxin Miao, Dan Li, Jizong Zhang, Sanjay K. Gupta and Carl Rosen
Remote Sens. 2025, 17(13), 2311; https://doi.org/10.3390/rs17132311 - 5 Jul 2025
Viewed by 379
Abstract
The petiole nitrate–nitrogen concentration (PNNC) has been an industry standard indicator for in-season potato (Solanum tuberosum L.) nitrogen (N) status diagnosis. Leaf sensors can be used to predict the PNNC and other N status indicators non-destructively. The SPAD meter is a common [...] Read more.
The petiole nitrate–nitrogen concentration (PNNC) has been an industry standard indicator for in-season potato (Solanum tuberosum L.) nitrogen (N) status diagnosis. Leaf sensors can be used to predict the PNNC and other N status indicators non-destructively. The SPAD meter is a common leaf chlorophyll (Chl) meter, while the Dualex is a newer leaf fluorescence sensor. Limited research has been conducted to compare the two leaf sensors for potato N status assessment. Therefore, the objectives of this study were to (1) compare SPAD and Dualex for predicting potato N status indicators, and (2) evaluate the potential prediction improvement using multi-source data fusion. The plot-scale experiments were conducted in Becker, Minnesota, USA, in 2018, 2019, 2021, and 2023, involving different cultivars, N treatments, and irrigation rates. The results indicated that Dualex’s N balance index (NBI; Chl/Flav) always outperformed Dualex Chl but did not consistently perform better than the SPAD meter. All N status indicators were predicted with significantly higher accuracy with multi-source data fusion using machine learning models. A practical strategy was developed using a linear support vector regression model with SPAD, cultivar information, accumulated growing degree days, accumulated total moisture, and an as-applied N rate to predict the vine or whole-plant N nutrition index (NNI), achieving an R2 of 0.80–0.82, accuracy of 0.75–0.77, and Kappa statistic of 0.57–0.58 (near-substantial). Further research is needed to develop an easy-to-use application and corresponding in-season N recommendation strategy to facilitate practical on-farm applications. Full article
(This article belongs to the Special Issue Proximal and Remote Sensing for Precision Crop Management II)
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15 pages, 2921 KiB  
Article
Effects of Different Ecological Floating Bed Plant Assemblages on Water Purification and Phytoplankton Community Structure in Shallow Eutrophic Lakes: A Case Study in Lake Taihu
by Yidong Liang, Ting Zhang, Wei Cui, Zhen Kuang and Dongpo Xu
Biology 2025, 14(7), 807; https://doi.org/10.3390/biology14070807 - 3 Jul 2025
Viewed by 386
Abstract
To explore the effects of different plant combinations in ecological floating beds on water quality purification and phytoplankton community structure in shallow eutrophic lakes, we conducted a survey of phytoplankton communities within ecological floating beds featuring distinct plant combinations in Meiliang Bay, Lake [...] Read more.
To explore the effects of different plant combinations in ecological floating beds on water quality purification and phytoplankton community structure in shallow eutrophic lakes, we conducted a survey of phytoplankton communities within ecological floating beds featuring distinct plant combinations in Meiliang Bay, Lake Taihu, during June and August 2021. The study focuses on two combinations: EA (Canna indica + Acorus calamus + Phragmites australis) and ES (Canna indica + Oenanthe javanica + Sagittaria sagittifolia). Results indicated that ecological floating beds significantly improved water quality, with the strongest restoration effects observed in the EA area. Specifically, turbidity was reduced by 47–89%, while chlorophyll a (Chl-a) concentration inhibition rates reached 82% in June and 54% in August. The comprehensive trophic state index (TLI) remained stable at levels indicating slight eutrophication (≤58.6). Phytoplankton community structure shifted from dominance by eutrophic functional groups (primarily FG M) toward greater diversity. In the EA area, the number of dominant functional groups increased from five (control) to six, and the abundance of the key cyanobacteria group (FG M) declined from 18.29% (control) to 7.86%. Redundancy analysis (RDA) revealed temporal changes in driving factors: nutrients were primary in June (explanation rate: 64.7%), while physical factors dominated in August (explanation rate: 51.2%). This study demonstrates that installing ecological floating beds with diverse plant combinations in shallow eutrophic lakes can effectively alter phytoplankton community structure and enhance in situ water restoration. Among the tested combinations, EA (Canna indica + Acorus calamus + Phragmites australis) exhibited the optimal restoration effect. These findings provide a scientific basis for water environment protection and aquatic biological resource restoration in shallow eutrophic lakes. Full article
(This article belongs to the Special Issue Global Fisheries Resources, Fisheries, and Carbon-Sink Fisheries)
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26 pages, 7645 KiB  
Article
Prediction of Rice Chlorophyll Index (CHI) Using Nighttime Multi-Source Spectral Data
by Cong Liu, Lin Wang, Xuetong Fu, Junzhe Zhang, Ran Wang, Xiaofeng Wang, Nan Chai, Longfeng Guan, Qingshan Chen and Zhongchen Zhang
Agriculture 2025, 15(13), 1425; https://doi.org/10.3390/agriculture15131425 - 1 Jul 2025
Viewed by 460
Abstract
The chlorophyll index (CHI) is a crucial indicator for assessing the photosynthetic capacity and nutritional status of crops. However, traditional methods for measuring CHI, such as chemical extraction and handheld instruments, fall short in meeting the requirements for efficient, non-destructive, and continuous monitoring [...] Read more.
The chlorophyll index (CHI) is a crucial indicator for assessing the photosynthetic capacity and nutritional status of crops. However, traditional methods for measuring CHI, such as chemical extraction and handheld instruments, fall short in meeting the requirements for efficient, non-destructive, and continuous monitoring at the canopy level. This study aimed to explore the feasibility of predicting rice canopy CHI using nighttime multi-source spectral data combined with machine learning models. In this study, ground truth CHI values were obtained using a SPAD-502 chlorophyll meter. Canopy spectral data were acquired under nighttime conditions using a high-throughput phenotyping platform (HTTP) equipped with active light sources in a greenhouse environment. Three types of sensors—multispectral (MS), visible light (RGB), and chlorophyll fluorescence (ChlF)—were employed to collect data across different growth stages of rice, ranging from tillering to maturity. PCA and LASSO regression were applied for dimensionality reduction and feature selection of multi-source spectral variables. Subsequently, CHI prediction models were developed using four machine learning algorithms: support vector regression (SVR), random forest (RF), back-propagation neural network (BPNN), and k-nearest neighbors (KNNs). The predictive performance of individual sensors (MS, RGB, and ChlF) and sensor fusion strategies was evaluated across multiple growth stages. The results demonstrated that sensor fusion models consistently outperformed single-sensor approaches. Notably, during tillering (TI), maturity (MT), and the full growth period (GP), fused models achieved high accuracy (R2 > 0.90, RMSE < 2.0). The fusion strategy also showed substantial advantages over single-sensor models during the jointing–heading (JH) and grain-filling (GF) stages. Among the individual sensor types, MS data achieved relatively high accuracy at certain stages, while models based on RGB and ChlF features exhibited weaker performance and lower prediction stability. Overall, the highest prediction accuracy was achieved during the full growth period (GP) using fused spectral data, with an R2 of 0.96 and an RMSE of 1.99. This study provides a valuable reference for developing CHI prediction models based on nighttime multi-source spectral data. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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19 pages, 4387 KiB  
Article
Comparing Chlorophyll Fluorescence and Hyperspectral Indices in Drought-Stressed Young Plants in a Maize Diversity Panel
by Lovro Vukadinović, Vlatko Galić, Andrija Brkić, Antun Jambrović and Domagoj Šimić
Agronomy 2025, 15(7), 1604; https://doi.org/10.3390/agronomy15071604 - 30 Jun 2025
Viewed by 338
Abstract
Progressing climate change necessitates the development of drought-tolerant crops, and understanding the temporal dynamics of genotype x environment interactions (GxE) is crucial. This study aimed to test established phenotyping methods (chlorophyll a fluorescence (ChlF) and hyperspectral (HS) imaging) to investigate the variability in [...] Read more.
Progressing climate change necessitates the development of drought-tolerant crops, and understanding the temporal dynamics of genotype x environment interactions (GxE) is crucial. This study aimed to test established phenotyping methods (chlorophyll a fluorescence (ChlF) and hyperspectral (HS) imaging) to investigate the variability in 165 inbred maize lines’ responses to progressive drought stress. The inbred maize lines were grown under controlled conditions and were challenged with water withholding. Fifteen ChlF and HS indices were measured at three consecutive time points (M1, M2, and M3). Mixed models were employed to estimate the GxT interaction effects via Best Linear Unbiased Predictors (BLUPs) for each variable. A Principal Component Analysis (PCA) performed on the GxT BLUPs from each time point revealed a highly dynamic interaction structure. While the primary axis of GxT variation (PC1) was consistently associated with HI, which is related to plant vigor, across all measurement times, its importance intensified under severe stress (M3). The secondary axis (PC2) shifted markedly over time: after initial variations at M1, it was dominated by GxT effects in specific ChlF parameters related to photosynthetic regulation under moderate stress (M2), before shifting again under severe stress (M3) to reflect the GxT effects on indices potentially related to pigment degradation and other stress indicators. Full article
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