Search Results (759)

This review delves into the characteristics of lipid metabolism reprogramming in cancer cells and immune cells within the tumor microenvironment (TME), discussing its role in tumorigenesis and development and analyzing the value of lipid metabolism-related molecules in tumor diagnosis and prognosis. Cancer cells support their rapid growth through aerobic glycolysis and lipid metabolism reprogramming. Lipid metabolism plays distinct roles in cancer and immune cells, including energy supply, cell proliferation, angiogenesis, immune suppression, and tumor metastasis. This review focused on shared lipid metabolic enzymes and transporters, lipid metabolism-related oncogenes and non-coding RNAs (ncRNAs) involved in cancer cells, and the influence of lipid metabolism on T cells, dendritic cells (DCs), B cells, tumor associated macrophages (TAMs), tumor associated neutrophils (TANs), and natural killer cells (NKs) within TME. Additionally, the role of lipid metabolism in tumor diagnosis and prognosis was explored, and lipid metabolism-based anti-tumor treatment strategies were summarized, aiming to provide new perspectives for achieving precision medicine. Full article

Tellurite (TeO₃²⁻) is a highly soluble and toxic oxyanion that inhibits the growth of Escherichia coli at concentrations as low as ~1 µg/mL. This toxicity has been primarily attributed to the generation of reactive oxygen species (ROS) during its intracellular reduction by thiol-containing molecules and NAD(P)H-dependent enzymes. However, under anaerobic conditions, E. coli exhibits significantly increased tellurite tolerance—up to 100-fold in minimal media—suggesting the involvement of additional, ROS-independent mechanisms. In this study, we combined chemical-genomic screening, untargeted metabolomics, and targeted biochemical assays to investigate the effects of tellurite under both aerobic and anaerobic conditions. Our findings reveal that tellurite perturbs amino acid and nucleotide metabolism, leading to intracellular imbalances that impair protein synthesis. Additionally, tellurite induces notable changes in membrane lipid composition, particularly in phosphatidylethanolamine derivatives, which may influence biophysical properties of the membrane, such as fluidity or curvature. This membrane remodeling could contribute to the increased resistance observed under anaerobic conditions, although direct evidence of altered membrane fluidity remains to be established. Overall, these results demonstrate that tellurite toxicity extends beyond oxidative stress, impacting central metabolic pathways and membrane-associated functions regardless of oxygen availability. Full article

This study evaluates the agronomic potential of two types of vermicompost—one produced solely from wine industry residues (WIR) and one incorporating sewage sludge (WIR + SS)—under rainfed and deficit irrigation conditions in Mediterranean vineyards. The vermicompost was obtained through a two-phase process involving initial thermophilic pre-composting, followed by vermicomposting using Eisenia fetida for 90 days. The conditions were optimized to ensure aerobic decomposition and maintain proper moisture levels (70–85%) and temperature control. This resulted in end products that met the legal standards required for agricultural use. However, population dynamics revealed significantly higher worm reproduction and biomass in the WIR treatment, suggesting superior substrate quality. When applied to grapevines, WIR vermicompost increased soil organic matter, nitrogen availability, and overall fertility. Under rainfed conditions, it improved vegetative growth, yield, and must quality, with increases in yeast assimilable nitrogen (YAN), sugar content, and amino acid levels comparable to those achieved using chemical fertilizers, as opposed to the no-fertilizer trial. Foliar analyses at veraison revealed stronger nutrient uptake, particularly of nitrogen and potassium, which was correlated with improved oenological parameters compared to the no-fertilizer trial. In contrast, WIR + SS compost was less favorable due to lower worm activity and elevated trace elements, despite remaining within legal limits. These results support the use of vermicompost derived solely from wine residues as a sustainable alternative to chemical fertilizers, in line with the goals of the circular economy in viticulture. Full article

Organic amendments provide a sustainable strategy to enhance soil quality in degraded environments while also helping to reduce greenhouse gas emissions, for example, by improving soil structure, minimizing the use of synthetic fertilizers, and promoting a green economy. This study assessed the comparative effects of two organic amendments—vermicompost leachate and biochar—on the performance of popcorn maize (Zea mays L. var. everta) cultivated in saline soil conditions. Four treatments were evaluated: T0 (Control), T1 (Vermicompost leachate), T2 (Biochar), and T3 (Vermicompost leachate + Biochar), each with 10 replicates arranged in a Completely Randomized Design (CRD). Although various soil physicochemical, microbiological, and agronomic parameters displayed no significant differences compared to the control, the application of biochar resulted in considerable improvements in soil total organic carbon, the microbial community (mesophilic aerobic bacteria, molds, and yeasts), and increased seed length and diameter. In contrast, vermicompost leachate alone negatively impacted plant growth, leading to decreases in leaf area, stem thickness, and grain yield. Specifically, grain yield declined by 46% with leachate alone and by 31% when combined with biochar, compared to the control. These findings emphasize the superior effectiveness of biochar over vermicompost leachate as a soil amendment under saline conditions and highlight the potential risks of widely applying compost teas in stressed soils. It is recommended to conduct site-specific assessments and screenings for phytotoxins and phytopathogens prior to use. Additionally, the combined application of leachate and biochar may not be advisable given the tested soil characteristics. Full article

Biodrying and composting are aerobic processes to treat and stabilize organic solid waste, but biodrying involves a shorter process time and does not require the addition of water. The resulting biodried material (BM) is mainly used as an energy source in cement production or in municipal solid waste incineration with energy recovery, but when obtained from agricultural or agroindustrial organic waste, it could also be used as a soil amendment, such as compost (CO). In this study, the phytotoxicity of BM compared to CO, both made from organic wastes (orange peel, mulch and grass), was evaluated on seed germination and growth (for 90 days) of lettuce (Lactuca sativa L.) seedlings on treatments prepared from mixtures of BM and soil, soil (100%) and a mixture of CO and soil. The germination index (GI%) was higher for BM extracts (200 g/L) than for CO extracts (68% vs. 53%, respectively). According to their dry weight, lettuce grew more on the CO mixture (16.5 g) than on the BM (5.4–7.4 g), but both materials far exceeded the soil values (0.15 g). The absence of phytotoxicity suggests that BM acts as a soil amendment, improving soil structure and providing nutrients to the soil. Therefore, biodrying is a quick and low-cost bioprocess to obtain a soil improver. Full article

Background: The purpose of this study was to investigate the effects of a 16-week exercise program combining aerobic and resistance training on body composition, growth differentiation factor-15 (GDF-15), apelin-12, and interleukin-15 (IL-15) in older Korean women according to obesity status. Methods: Participants were divided into obesity (n = 15) and normal-weight groups (n = 14). A walking exercise was performed at 60–70% heart rate reserve (RPE 13–15). The bodyweight resistance exercises were progressively intensified over 16 weeks. Analysis methods included two-way repeated measures ANOVA, ANCOVA, and paired and independent t-tests. Results: Significant main effects of time and group were observed in body weight (p < 0.001), and both groups demonstrated significant within-group reductions in body mass index (BMI) (obese: p < 0.001; normal-weight: p < 0.05), along with significant between-group differences (p < 0.001). The percentage of body fat significantly decreased over time (p < 0.01) and differed between groups (p < 0.001). GDF-15 exhibited a significant group × time interaction (p < 0.05) and a main group effect (p < 0.05). Although no statistically significant changes were observed in Apelin-12 levels, an opposite trend was identified between groups, with an increase in the obese group and a decrease in the normal-weight group. For IL-15, no significant interaction effect was found between the groups. Conclusions: The 16-week combined exercise intervention improved key markers of body composition, particularly in obese older women, and led to increased GDF-15, indicating potential metabolic benefits. While changes in apelin-12 and IL-15 were not statistically significant, the findings support the utility of combined exercise for mitigating fat accumulation and promoting healthy aging in older adults. Full article

The gut microbiota, dominated by bacteria from the Firmicutes, Bacteroidetes, Proteobacteria, and Actinobacteria phyla, plays an essential role in fermenting indigestible carbohydrates, regulating metabolism, synthesizing vitamins, and maintaining immune functions and intestinal barrier integrity. Dysbiosis is associated with obesity development. Shifts in the ratio of Firmicutes to Bacteroidetes, particularly an increase in Firmicutes, may promote enhanced energy storage, appetite dysregulation, and increased inflammatory processes linked to insulin resistance and other metabolic disorders. The purpose of this literature review is to summarize the current state of knowledge on the relationship between the development and treatment of obesity and overweight and the gut microbiota. Current evidence suggests that probiotics, prebiotics, synbiotics, and fecal microbiota transplantation (FMT) can influence gut microbiota composition and metabolic parameters, including body weight and BMI. The most promising effects are observed with probiotic supplementation, particularly when combined with prebiotics, although efficacy depends on strain type, dose, and duration. Despite encouraging preclinical findings, FMT has shown limited and inconsistent results in human studies. Diet and physical activity are key modulators of the gut microbiota. Fiber, plant proteins, and omega-3 fatty acids support beneficial bacteria, while diets low in fiber and high in saturated fats promote dysbiosis. Aerobic exercise increases microbial diversity and supports growth of favorable bacterial strains. While microbiota changes do not always lead to immediate weight loss, modulating gut microbiota represents an important aspect of obesity prevention and treatment strategies. Further research is necessary to better understand the mechanisms and therapeutic potential of these interventions. Full article

The widely utilized TiO₂ nanoparticles (NPs) tend to accumulate in wastewater and affect microbial growth. This work investigated the impacts of prolonged TiO₂ NP addition to filamentous aerobic granular sludge (AGS) using two identical sequencing batch reactors (SBRs, R1 and R2). R1 (the control) had no TiO₂ NP addition. In this reactor, filamentous bacteria from large AGS grew rapidly and extended outward, the sludge volume index (SVI₃₀) quickly increased from 41.2 to 236.8 mL/g, mixed liquid suspended solids (MLSS) decreased from 4.72 to 0.9 g/L, and AGS disintegrated on day 40. Meanwhile, the removal rates of COD and NH₄⁺-N both exhibited significant declines. In contrast, 5–30 mg/L TiO₂ NPs was added to R2 from day 21 to 100, and the extended filamentous bacteria were effectively controlled on day 90 under a 30 mg/L NP dosage, leading to significant reductions in COD and NH₄⁺-N capabilities, particularly the latter. Therefore, NP addition was stopped on day 101, and AGS became dominant in R2, with an SVI₃₀ and MLSS of 48.5 mL/g and 5.67 g/L on day 130. COD and NH₄⁺-N capabilities both increased to 100%. Microbial analysis suggested that the dominant filamentous bacteria—Proteobacteria, Bacteroidetes, and Acidobacteria—were effectively controlled by adding 30 mg/L TiO₂ NPs. XRF analysis indicated that 11.7% TiO₂ NP accumulation made the filamentous bacteria a framework for AGS recovery and operation without NPs. Functional analysis revealed that TiO₂ NPs had stronger inhibitory effects on nitrogen metabolism compared to carbon metabolism, and both metabolic pathways recovered when NP addition was discontinued in a timely manner. These findings offer critical operational guidance for maintaining the stable performance of filamentous AGS systems treating TiO₂ NP wastewater in the future. Full article

The lyophilised sumac (Rhus coriaria L) extract (LSE), in amounts of 0.25, 0.5, 1.0, 1.25, and 1.5 g/100 ml of juice, was incorporated into carrot juice, and its properties were assessed after 24, 48, and 72 h. A product without the lyophilised sumac extract served as the control. The highest supplementation level enhanced the physicochemical characteristics of carrot juice, increasing carotenoid and polyphenolic contents by 22% and 70% on the first day. The LSE significantly boosted antioxidant activity, yielding over a tenfold increase, while reducing capacity was elevated more than sevenfold. LC-MS analysis confirmed the presence of bioactive compounds, such as chalcones, flavonols, flavones, and phenolic acids, further validating the extract’s functional potential. Acidity and redness exhibited a proportional increase with the rising concentrations of the additive used. Additionally, microbial growth, including aerobic mesophiles, yeasts, and moulds, was markedly suppressed. After 72 h, the total count of aerobic microorganisms and yeasts/mould was reduced by 5.64 log and 4.94 log, respectively, compared to the control. The lyophilised sumac extract, rich in valuable bioactive compounds with antioxidant properties, effectively preserved freshly pressed carrot juice, mitigating spoilage and extending its shelf life. This form of sumac serves as a sustainable beverage additive, minimises food waste, and aligns with clean-label trends. Full article

Acid phosphatase (ACPase) is an essential industrial enzyme, but its production via recombinant bacterial fermentation is often limited by insufficient dissolved oxygen control. This study optimized the aerobic fermentation of the ACPase-producing recombinant bacterium Bacillus subtilis 168/pMA5-Acp by refining the bioreactor’s aerodynamic structure using computational fluid dynamics (CFD) simulations. This was combined with fermentation kinetics modeling to achieve precise process control. First, the gas distributor structure of the 5 L bioreactor was optimized using CFD simulation results. Optimal mass transfer conditions were identified through comprehensive analysis of K_La in different reactor regions (aeration ratio: 1.142 VVm, K_La = 264.2 h⁻¹). The simulation results showed that the optimized oxygen transfer efficiency increased 2.49 fold compared to the prototype. Second, the process control issue was addressed by developing a BP (backpropagation) neural network model to predict K_La under alternative media conditions. The prediction error was less than 5%, and the model was combined with the logistic equation to construct the bacterial growth kinetic model (R² > 0.99). The experiments demonstrated that using the optimized reactor with a molasses–urea medium (molasses 7.5 g/L; urea 15 g/L; K₂HPO₄ 1.2 g/L; MgSO₄·7H₂O 0.25 g/L) reduced production costs while maintaining enzyme activity (215.99 U/mL) and biomass (OD₆₀₀ = 101.67) by 90.03%. This study provides an efficient and cost-effective process solution for the industrial production of ACPase and a theoretical foundation for bioreactor design and scale-up. Full article

ES5-4^T, a Gram-positive, motile, aerobic, and rod-shaped strain, was isolated from the rhizosphere of Galinsoga parviflora growing in the selenium-rich ore area of Enshi, Hubei Province, China. This strain can grow at pH levels of 5.0–10.0 and temperatures of 4–42 °C, with optimal growth at pH 7.0 and 28 °C. It was found to resist NaCl up to 5% (w/v), with an optimal growth condition of 0.5–1.0%. The strain exhibited tolerance to selenite (Se⁴⁺) concentrations up to 5000 mg/L. The major fatty acids of the ES5-4^T strain were anteiso-C_15:0 (46.5%) and C_16:0 (21.7%), its predominant respiratory quinone was MK-7, and its polar lipids included diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and an unidentified phospholipid (PL). The presence of the 16S rRNA gene sequence implies that ES5-4^T belongs to a member of the genus Paenibacillus, with the highest sequence similarity of 98.4% to Paenibacillus pabuli NBRC 13638^T. The bac120 tree also confirmed that the strain is within the genus Paenibacillus. The average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between ES5-4^T and closely related members of the genus Paenibacillus were all below the cutoff levels of 95–96% and 70%, respectively. Based on a polyphasic approach, including phenotypic, chemotaxonomic, and phylogenetic analyses, the ES5-4^T strain is proposed as a novel species of the genus Paenibacillus, for which the name Paenibacillus hubeiensis sp. nov. is proposed. This type strain is designated as ES5-4^T (=GDMCC 1.3540^T = KCTC 43478^T). Full article

The structure of microbial communities in sponge-sand filters, used for the treatment of real domestic sewage with elevated ammonium nitrogen concentrations (approximately 155 mg·dm⁻³), was characterized using 16S rRNA gene sequencing. Analyses using the Illumina technique allowed us to perform a comparison of filters by layer (two or three layers) and type of fill (waste PUR foams with 95% open porosity, sand). Proteobacteria, actinobacteria, and firmicutes were shown to be the most abundant phyla. The number and type of fill layers had a significant impact on the diversity of nitrifying bacteria. The presence of Nitrosomonas and Nitrospira was observed in every sponge fill sample, but the abundance of autotrophic nitrifiers was negligible in the two-layer filter. The conditions there proved more favorable for the growth of aerobic heterotrophic bacteria. Also in the Schmutzdecke layer, a dominance of heterotrophic nitrifiers was found. The abundance of bacteria with nitrifying activity (AOB, comammox, HNAD) in the biomass of spongy fill placed in casings was 1.7 times lower than in foams without casings. In addition, anammox bacteria (unidentified Planctomycetes), found mainly in the sponge fill and Schmutzdecke of the three-layer filters, may have been responsible for NH4⁺-N removal exceeding 70%. In the case of the two-layer filter, the removal of this pollutant reached 92%. Burkholderia and Sphingopyxis were identified as the predominant denitrifying bacteria. The foam-filled filter in the casings showed an increase in o_Caldilineaceae, involved in nitrate removal as non-denitrifiers. Actinomycetes Pseudonocardia and Amycolatopsis, as well as Proteobacteria Devosia, Acinetobacter, and Bdellovibrio, were found to be involved in phosphorus removal in the waste PUR foams. Full article

Autosomal dominant polycystic kidney disease (ADPKD) is a prevalent hereditary renal disorder characterized by the progressive formation of numerous fluid-filled cysts, ultimately leading to end-stage kidney disease. The results of recent studies have demonstrated that metabolic reprogramming plays a crucial role in cystogenesis and disease progression, including enhanced aerobic glycolysis, impaired fatty acid oxidation, glutamine dependence, and mitochondrial dysfunction; these metabolic alterations are regulated by signaling pathways such as mTOR, cAMP/PKA, and HIF-1α, which can modulate cell proliferation, fluid secretion, and energy metabolism. Furthermore, hypoxia and the oxidative microenvironment also promote the growth of cysts. In this review, we summarized the complex interactions between metabolic pathway alterations and key signaling cascades in ADPKD, in addition to exploring new therapeutic strategies targeting these metabolic pathways, including drug and dietary interventions. A comprehensive understanding of these mechanisms may contribute to the development of innovative treatment methods aiming to slow the disease progression of patients with ADPKD. Full article

Extreme weather events such as heavy rainfall significantly reduce surface salinity in coastal waters, presenting considerable challenges to the aquaculture of Japanese scallops (Mizuhopecten yessoensis) in shallow cage systems. This study investigated the effects of chronic low-salinity stress on the growth performance, antioxidant capacity, and gene expression profile of M. yessoensis using a 60-day salinity gradient experiment. S33 represents the control treatment with normal seawater salinity (33‰), while S30, S28, and S26 represent experimental groups with progressively lower salinities of 30‰, 28‰, and 26‰, respectively. A decline in salinity was accompanied by an increase in oxygen consumption. The S26 group exhibited a higher ammonia excretion rate (2.73 μg/g·h) than other groups, indicating intensified nitrogen metabolism. Growth was inhibited under low-salinity conditions. The S33 group exhibited greater weight gain (16.7%) and shell growth (8.4%) compared to the S26 group (11.6% and 6%), which also showed a substantially higher mortality rate (46%) compared to the control (13%). At 28‰, antioxidant enzyme activities (T-AOC, SOD, CAT, POD) were elevated, indicating a moderate level of stress. However, at the lowest salinity (26‰), these indicators decreased, reflecting the exhaustion of the antioxidant systems and indicating that the mollusks’ adaptive capacity had been exceeded, leading to a state of stress fatigue. NAD-MDH activity was elevated in the S26 group, reflecting enhanced aerobic metabolism under stress. Transcriptome analysis revealed 564 differentially expressed genes (DEGs) between the S33 and S26 groups. Functional enrichment analysis indicated that these DEGs were mainly associated with immune and stress response pathways, including NF-κB, TNF, apoptosis, and Toll/Imd signaling. These genes are involved in key metabolic processes, such as alanine, aspartate, and glutamate metabolism. Genes such as GADD45, ATF4, TRAF3, and XBP1 were upregulated, contributing to stress repair and antioxidant responses. Conversely, the expressions of CASP3, IKBKA, BIRC2/3, and LBP were downregulated, potentially mitigating apoptosis and inflammatory responses. These findings suggest that M. yessoensis adapts to chronic low-salinity stress through the activation of antioxidant systems, modulation of immune responses, and suppression of excessive apoptosis. This study provides new insights into the molecular mechanisms underlying salinity adaptation in bivalves and offers valuable references for scallop aquaculture and selective breeding programs. Full article

Traditional methods of microbial quantification of irrigation water using colony counts from agar culture require dedicated laboratory space and trained personnel, limiting their on-site applicability. Dehydrated Petrifilm™ plates are a simpler alternative but still require 2–3 days to culture. Adenosine triphosphate (ATP) tests may offer a fast and reliable method for quantifying microbes in water. In this study, we compared (a) microbial quantification based on ATP assays with Petrifilm™-based assays, and (b) we evaluated the effectiveness of cold plasma or ozone treatments in controlling microbial growth at various oxidation–reduction potential (ORP) levels. Lake water was recirculated through an ozone or cold plasma treatment system until a target ORP of 700 mV was reached. Samples were collected at various ORP levels and plated for aerobic bacteria and yeast and mold counts using Petrifilm™ plates. The free and total ATP concentrations were measured using the Hygiena EnSURE luminometer and its accompanying free and total ATP swabs. Microbial ATP was calculated by subtracting the free from the total ATP. Cold plasma and ozone showed similar effects on microbial inactivation at 700 mV (p < 0.05). Both treatments achieved complete fungal inactivation at 600–700 mV ORP, bacterial inactivation at 600 mV ORP, and near-complete inactivation of microbial ATP at 600–700 mV. A moderate positive correlation (Pearson’s correlation = 0.39 and Spearman’s rank correlation = 0.39) was observed between the Petrifilm™ bacterial counts and microbial ATP levels, suggesting ATP quantification could complement Petrifilm™ for rapid and non-selective onsite microbial assessment of irrigation water. Full article