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Keywords = Gramineae

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19 pages, 7920 KB  
Article
Oilseed Rape (Brassica napus L.) Straw Incorporation by Shallow Tillage as an Alternative Allelopathic Strategy for Natural Controlling Weeds in Transplanting Rice Fields
by Qingyi Cao, Siyu Yang, Rong Yang, Jinwen Zhu, Shuying Li, Mengcen Wang and Wenjun Gui
Agronomy 2026, 16(9), 876; https://doi.org/10.3390/agronomy16090876 - 26 Apr 2026
Viewed by 208
Abstract
Effective weed control is essential for sustainable and safe rice production, particularly under the long-term and widespread use of chemical herbicides. Oilseed rape (Brassica napus L.) is one of the most important oil crops worldwide, and the oilseed rape–rice rotation system is [...] Read more.
Effective weed control is essential for sustainable and safe rice production, particularly under the long-term and widespread use of chemical herbicides. Oilseed rape (Brassica napus L.) is one of the most important oil crops worldwide, and the oilseed rape–rice rotation system is widely practiced in China. It has been reported to exhibit strong allelopathy on various plants, but the feasibility of using its straw incorporation for weed control in transplanted rice fields remains unclear. In this study, a natural weed management strategy based on shallow tillage of oilseed rape straw (ORS) was evaluated through laboratory bioassays, greenhouse experiments, and field trials. The results indicated that soil decomposition liquids (SDLs) of ORS exhibited strong dose- and decomposition time-dependent allelopathic effects on seven paddy weed species, while rice showed markedly lower sensitivity. ORS incorporated at 700–1100 g/m2 generally exhibited high integrated allelopathic inhibition (in lab) and population control effects (in greenhouse) on paddy weeds, especially Leptochloa chinensis (L.) Nees, Cyperus iria L., and Cyperus difformis L. Among the growth parameters of ORS allelopathic stress, root growth was the most sensitive indicator, followed by shoot growth and seed germination. Greenhouse experiments displayed variety-dependent impact on the transplanted rice seedlings, with Xiushui134 and Yongyou1540 showing relatively high tolerance. Field trials revealed that ORS incorporation at 1100 g/m2 for 10 d achieved a satisfactory control of population (77.7–84.9%) and fresh weight (80.7–95.6%) across Gramineae, Cyperaceae and Broadleaf weeds, without adverse impact on the growth of transplanted rice seedlings (Yongyou1540). This treatment also significantly promoted theoretical grain yield by 13.4–19.4%. Overall, shallow tillage of oilseed rape straw provides a feasible and environmentally friendly weed control strategy for transplanted rice systems. Full article
(This article belongs to the Section Weed Science and Weed Management)
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21 pages, 7157 KB  
Article
Comprehensive Updated Genome-Wide Identification and Expression Patterns of the TaGeBP Gene Family in Wheat
by Shuqing Zhang, Jianwen Ding, Tianao Li, Yuxuan Zhao, Dengan Xu, Jianbin Zeng, Wenxing Liu, Mei Qu, Wujun Ma and Xuehuan Dai
Int. J. Mol. Sci. 2025, 26(24), 11972; https://doi.org/10.3390/ijms262411972 - 12 Dec 2025
Cited by 1 | Viewed by 694
Abstract
The GLABROUS1 Enhancer Binding Protein (GeBP) family, plant-specific transcription factors with a non-classical Leu-zipper motif, plays crucial roles in plant development and stress responses. Although GeBP genes have been characterized in several Gramineae crops, including a preliminary genome-wide identification of 11 GeBP genes [...] Read more.
The GLABROUS1 Enhancer Binding Protein (GeBP) family, plant-specific transcription factors with a non-classical Leu-zipper motif, plays crucial roles in plant development and stress responses. Although GeBP genes have been characterized in several Gramineae crops, including a preliminary genome-wide identification of 11 GeBP genes in common wheat (Triticum aestivum L.), a comprehensive and systematic analysis of the TaGeBP family remains lacking. In this study, 37 TaGeBP genes were identified in the wheat genome (cv. Chinese Spring), representing a substantially higher number than the 11 reported in the prior study. This discrepancy is likely attributable to the integration of updated genome assemblies, refined gene identification criteria, and comprehensive domain validation. Phylogenetic analysis classified these 37 TaGeBPs into four distinct groups, with members within the same subgroup sharing conserved exon–intron architectures and protein motif compositions. Promoter cis-acting element analysis revealed significant enrichment of motifs associated with abiotic stress responses and phytohormone signaling, implying potential involvement of TaGeBPs in mediating plant adaptive processes. Evolutionary analysis indicated that TaGeBP family expansion was primarily driven by allopolyploidization and segmental duplication, with purifying selection constraining their sequence divergence. Members within the same subgroup shared similar exon–intron structures and conserved protein motifs. Promoter analysis revealed that TaGeBP genes are enriched with cis-elements related to stress and phytohormone responses, suggesting their potential involvement in adaptive processes. Gene expansion in the TaGeBP family was mainly driven by allopolyploidization and segmental duplication, with evolution dominated by purifying selection. Tissue-specific expression profiling demonstrated that most TaGeBPs are preferentially expressed in roots and spikes, with varying expression patterns across different tissues. Under salt and drought stresses, qRT-PCR results indicated diverse response profiles among TaGeBPs. Furthermore, subcellular localization confirmed the nuclear presence of selected TaGeBPs, supporting their predicted role as transcription factors. These findings offer important insights for further functional characterization of TaGeBP genes, particularly regarding their roles in abiotic stress tolerance. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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18 pages, 1764 KB  
Article
Effects of Cover Crops on Water Use Efficiency in Orchard Systems in the Danjiangkou Catchment, Central China
by Linyang Li, Peng Chen, Xinxin Jing, Chenhao Lyu, Runqin Zhang, Xiaoliang Yuan, Qian Li, Yi Liu, Xiaoquan Zhang and Zhiguo Li
Plants 2025, 14(24), 3729; https://doi.org/10.3390/plants14243729 - 7 Dec 2025
Viewed by 789
Abstract
Water scarcity strongly limits the establishment and productivity of young orchards. Although cover crops are increasingly adopted to improve soil health, their integrated effects on soil–plant–water interactions under drought remain unclear. Here, a two-year field study evaluated Legume, Gramineae, and Legume-Gramineae mixture covers [...] Read more.
Water scarcity strongly limits the establishment and productivity of young orchards. Although cover crops are increasingly adopted to improve soil health, their integrated effects on soil–plant–water interactions under drought remain unclear. Here, a two-year field study evaluated Legume, Gramineae, and Legume-Gramineae mixture covers in relation to soil water dynamics, evapotranspiration (ET), and water use efficiency (WUE). Gramineae cover reduced 0–100 cm soil water storage by 5.99% compared with bare soil, whereas the Legume-Gramineae mixture effectively buffered drought-induced water loss. All cover treatments increased total ET, with the mixture showing the highest (10.31%), indicating that enhanced transpiration compensated for reduced soil evaporation. As a result, WUE improved, particularly during winter and spring when water demand was lower. Stepwise analysis identified rainfall as the primary climatic drivers of ET and WUE. Overall, the Legume-Gramineae mixture offers a promising strategy for improving WUE and mitigating drought stress in water-limited orchards. Full article
(This article belongs to the Special Issue Water and Nitrogen Management in the Soil–Crop System (3rd Edition))
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25 pages, 1112 KB  
Article
Influence of Atmospheric Pollutants on Allergic Sensitization to Cupressaceae, Olea, and Platanus Pollen in the Community of Madrid (2017–2021)
by Javier Chico-Fernández, Angélica Feliu Vila, Beatriz Rodríguez-Jiménez, Teresa Valbuena Garrido and Esperanza Ayuga-Téllez
Life 2025, 15(11), 1774; https://doi.org/10.3390/life15111774 - 19 Nov 2025
Viewed by 819
Abstract
Tree pollen is the most abundant in the Community of Madrid (CAM), and specifically, pollen types from Olea, Cupressaceae, and Platanus are the most allergenic, after Gramineae, in this Spanish region. Air pollutants are one of the most significant stress factors for [...] Read more.
Tree pollen is the most abundant in the Community of Madrid (CAM), and specifically, pollen types from Olea, Cupressaceae, and Platanus are the most allergenic, after Gramineae, in this Spanish region. Air pollutants are one of the most significant stress factors for wind-pollinated vegetation, especially in urban areas, and can cause alterations in the immune system and the consequent triggering of type I hypersensitivity reactions mediated by immunoglobulin E (IgE). This study analyses the allergic sensitization caused by the interrelation of O3, NO2, and PM10 pollutants with the tree pollen types Olea, Cupressaceae, and Platanus in the period 2017–2021. To this end, general linear models were calculated using the Statgraphics Centurion 19 tool. The data collected came from the Air Quality Networks of the CAM and Madrid City Council, the CAM Palynological Network, and the Allergy Services of the reference hospitals in the five study areas. This research confirms a statistically significant correlation between allergic sensitivity to pollen types and their concentrations in the air, and those of atmospheric pollutants, in the different areas and years studied. These pollen and pollutant concentrations in the atmosphere of the CAM jointly influence the prevalence of allergic sensitisation, as is evident in all the models calculated. Full article
(This article belongs to the Section Epidemiology)
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16 pages, 11893 KB  
Article
Stoichiometric Homeostasis and Functional Group Divergence Jointly Enhance Alpine Plant Adaptation to Environmental Stress
by Aihui Ma, Zhe Chen, Xin Jing, Yu Chen, Jinhong Guan, Shixiong Wang, Wenying Wang, Huakun Zhou, Jian Sun, Xufeng Mao and Yanxia Jin
Plants 2025, 14(18), 2835; https://doi.org/10.3390/plants14182835 - 11 Sep 2025
Cited by 1 | Viewed by 1118
Abstract
Climate warming promotes alpine plant migration to higher elevations, yet how they adapt via stoichiometric homeostasis remains unclear. We measured plant C, N, and P traits and homeostasis across community and functional group levels in three alpine vegetation types—meadow (3200–3400 m), shrubland (3400–3700 [...] Read more.
Climate warming promotes alpine plant migration to higher elevations, yet how they adapt via stoichiometric homeostasis remains unclear. We measured plant C, N, and P traits and homeostasis across community and functional group levels in three alpine vegetation types—meadow (3200–3400 m), shrubland (3400–3700 m), and cushion vegetation (3700–4400 m)—along an altitudinal gradient in the northern Qilian Mountains, Tibetan Plateau. Shrubland, as ecotones, had higher soil C and N, with plant communities showing the highest N and N:P but lowest C:N. At the functional group level, Poaceae (Gramineae) and forbs had the highest N and N:P, while Cyperaceae had the highest P in shrubland. Notably, Cyperaceae in shrubland exhibited weak P and C:P homeostasis. Poaceae (Gramineae) were mainly influenced by soil, Cyperaceae by climate, and forbs by elevation. Structural equation modeling showed elevation indirectly affected stoichiometry via climate and soil; climate influenced nutrient contents, while soil controlled C:N:P ratios. These results reveal diverse nutrient regulation and survival strategies in alpine plants, enhancing understanding of adaptation and community assembly under climate change. Full article
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15 pages, 4075 KB  
Review
Potential of Hairless Canary Seed as a Food-Based Remedy for Celiac Disease and Diabetes
by El-Sayed M. Abdel-Aal and Tamer H. Gamel
Foods 2025, 14(17), 3011; https://doi.org/10.3390/foods14173011 - 28 Aug 2025
Viewed by 2126
Abstract
Hairless canary seed (Phalaris canariensis L.) can play significant roles in human health and nutrition due to its unique nutrient profile. It belongs to the Gramineae family similar to common cereal grains like wheat, rice and corn. On the other hand, the [...] Read more.
Hairless canary seed (Phalaris canariensis L.) can play significant roles in human health and nutrition due to its unique nutrient profile. It belongs to the Gramineae family similar to common cereal grains like wheat, rice and corn. On the other hand, the traditional canary seed is characterized by the presence of silicified spicules or hairs on the hulls of the kernel that could pose health hazards to humans. The hairless canary seed was developed in Canada by a conventional breeding program to mitigate the health concerns associated with the silicified hairs. The hairless grain is silica free, i.e., totally glabrous, and is granted regulatory food approvals by Health Canada and US-FDA. The hairless grain holds a great potential as a whole grain functional food ingredient due to its unique nutritional and functional attributes. As a cereal grain, it is rich in protein that is non-gluten and exceptionally high in tryptophan and bioactive peptides. The grain also contains reasonable amounts of carotenoids, polyphenols, and healthy unsaturated oil. Because of these special characteristics, it is considered a promising nutritious and therapeutic food. This review provides insights into the potential of hairless canary seed as a functional ingredient in products designed to mitigate oxidative stress, diabetes and celiac disease and/or to improve vision and cognition. Full article
(This article belongs to the Section Nutraceuticals, Functional Foods, and Novel Foods)
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26 pages, 4417 KB  
Article
Transcriptome Analysis and Functional Characterization of the HvLRR_8-1 Gene Involved in Barley Resistance to Pyrenophora graminea
by Wenjuan Yang, Ming Guo, Yan Li, Qinglan Yang, Huaizhi Zhang, Chengdao Li, Juncheng Wang, Yaxiong Meng, Xiaole Ma, Baochun Li, Lirong Yao, Hong Zhang, Ke Yang, Xunwu Shang, Erjing Si and Huajun Wang
Plants 2025, 14(15), 2350; https://doi.org/10.3390/plants14152350 - 30 Jul 2025
Viewed by 1445
Abstract
Barley leaf stripe, caused by Pyrenophora graminea (Pg), significantly reduces yields across various regions globally. Understanding the resistance mechanisms of barley to Pg is crucial for advancing disease resistance breeding efforts. In this study, two barley genotypes—highly susceptible Alexis and immune [...] Read more.
Barley leaf stripe, caused by Pyrenophora graminea (Pg), significantly reduces yields across various regions globally. Understanding the resistance mechanisms of barley to Pg is crucial for advancing disease resistance breeding efforts. In this study, two barley genotypes—highly susceptible Alexis and immune Ganpi2—were inoculated with the highly pathogenic Pg isolate QWC for 7, 14, and 18 days. The number of differentially expressed genes (DEGs) in Alexis was 1350, 1898, and 2055 at 7, 14, and 18 days, respectively, while Ganpi2 exhibited 1195, 1682, and 2225 DEGs at the same time points. Gene expression pattern analysis revealed that Alexis responded more slowly to Pg infection compared to Ganpi2. A comparative analysis identified 457 DEGs associated with Ganpi2’s immunity to Pg. Functional enrichment of these DEGs highlighted the involvement of genes related to plant-pathogen interactions and kinase activity in Pg immunity. Additionally, 20 resistance genes and 24 transcription factor genes were predicted from the 457 DEGs. Twelve candidate genes were selected for qRT-PCR verification, and the results showed that the transcriptomic data was reliable. We conducted cloning of the candidate Pg resistance gene HvLRR_8-1 by the barley cultivar Ganpi2, and the sequence analysis confirmed that the HvLRR_8-1 gene contains seven leucine-rich repeat (LRR) domains and an S_TKc domain. Subcellular localization in tobacco indicates that the HvLRR_8-1 is localized on the cell membrane. Through the functional analysis using virus-induced gene silencing, it was demonstrated that HvLRR_8-1 plays a critical role in regulating barley resistance to Pg. This study represents the first comparative transcriptome analysis of barley varieties with differing responses to Pg infection, providing that HvLRR_8-1 represents a promising candidate gene for improving durable resistance against Pg in cultivated barley. Full article
(This article belongs to the Special Issue The Mechanisms of Plant Resistance and Pathogenesis)
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21 pages, 12149 KB  
Article
Comparative Analysis of TALE Gene Family in Gramineae
by Zicong Liang, Shuai Shi, Baoping Xue, Dongyang Li, Yue Liu and Chang Liu
Agronomy 2025, 15(6), 1460; https://doi.org/10.3390/agronomy15061460 - 16 Jun 2025
Cited by 2 | Viewed by 1430
Abstract
The transcription factor known as TALE (three-amino acid loop extension) is essential for plant growth, cell differentiation and responses to environmental stresses. Although the TALE gene family has been identified in various plants, there has been a lack of comprehensive whole-genome identification and [...] Read more.
The transcription factor known as TALE (three-amino acid loop extension) is essential for plant growth, cell differentiation and responses to environmental stresses. Although the TALE gene family has been identified in various plants, there has been a lack of comprehensive whole-genome identification and analysis in Gramineae species. In this study, 123 TALE family genes were identified in five Gramineae species, which can be categorized into two main subgroups: KONX and BELL. Most of the TALE genes in the same subgroup displayed analogous gene structures and conserved motifs. Furthermore, whole genome duplication (WGD) significantly contributes to the expansion of the TALE gene family in Gramineae. The promoter region of TALE genes in Gramineae contains a large number of cis-elements associated with abiotic stress and hormone response. Tissue-specific expression analysis indicated that most OsTALE, ZmTALE and AtTALE genes were highly expressed in stems and leaves. Additionally, RNA-seq data revealed that OsTALE, ZmTALE and AtTALE genes were found to respond to abiotic stress treatments. Furthermore, we found that the expression levels of SbTALE11/19 were up-regulated in response to PEG and NaCl treatment, respectively. This study provides a significant reference for further research on the biological function of TALE transcription factors in Gramineae plants. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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19 pages, 3356 KB  
Article
Grazing Exclusion Affects Alpine Meadow Plants’ Root Morphological Traits and Reduces Their Cold Resistance on the Qinghai–Tibetan Plateau
by Jiuyun Chen and Yan Yan
Sustainability 2025, 17(11), 5010; https://doi.org/10.3390/su17115010 - 29 May 2025
Viewed by 1513
Abstract
Against the background of climate change, grazing accelerates the warming and drying processes in grasslands. There is a relatively clear temperature and humidity difference between grassland used for grazing and grassland that has been excluded from grazing practices. This paper asks whether temperature [...] Read more.
Against the background of climate change, grazing accelerates the warming and drying processes in grasslands. There is a relatively clear temperature and humidity difference between grassland used for grazing and grassland that has been excluded from grazing practices. This paper asks whether temperature and humidity differences affect plant roots and cold resistance. Representative plants from an alpine meadow on the eastern margin of the Qinghai–Tibetan Plateau were selected under grazing exclusion and grazing conditions. Dominant plants within and outside of an alpine meadow enclosed for 10 years in the study area were selected as the research objects to study the root morphology and physiological indices of the cold resistance of these plants. The results showed that (1) grazing exclusion (GE) was beneficial for soil temperature and water retention, reduced soil pH, and increased soil nutrient content. Under grazing exclusion conditions, all plant root morphological traits, except root tissue density, increased compared with those under grazing grassland (FG) conditions. Grazed plants adopted resource acquisition strategies, while grazing exclusion plants adopted resource conservation strategies. (2) The changes in the physiological indices of cold resistance in different years and grazing treatments were different. In 2023, the superoxide dismutase (SOD) activity and soluble protein content in GE conditions were significantly lower than those in FG conditions, while the peroxidase (POD) activity was significantly higher than that under FG conditions. The activity of catalase (CAT) in the GE plot was significantly lower than that in the FG plot in 2024. The cold resistance of Gramineae species was lower than that of non-Gramineae plants. A redundancy analysis (RDA) of plant root morphological traits, soil properties, and cold resistance showed that root length and soil pH were the most important factors affecting plant cold resistance. We concluded that grazing exclusion is conducive to plant root growth, but also acidifies the soil and reduces plant cold resistance. Full article
(This article belongs to the Section Environmental Sustainability and Applications)
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14 pages, 5518 KB  
Article
Experimental and Theoretical Acoustic Performance of Esparto Grass Fibers
by Rubén Maderuelo-Sanz and Juan Miguel Meneses-Rodríguez
Acoustics 2025, 7(2), 32; https://doi.org/10.3390/acoustics7020032 - 25 May 2025
Cited by 3 | Viewed by 2115
Abstract
Nowadays, natural fiber-based materials are widely used in the building sector, where the use of green and sustainable products is of growing interest. One of these fibrous materials is the esparto, a plant belonging to the Gramineae family, with a height up to [...] Read more.
Nowadays, natural fiber-based materials are widely used in the building sector, where the use of green and sustainable products is of growing interest. One of these fibrous materials is the esparto, a plant belonging to the Gramineae family, with a height up to 1 m. It grows in arid places with scarce rainfall, being common in some areas of the Iberian Peninsula. Due to its morphology, it can be used to replace conventional materials used in soundproofing and building applications. In this work, the acoustic properties of esparto fibers are studied using impedance tube measurements and via a phenomenological acoustic model where the input parameters are some non-acoustic properties such as porosity, density, tortuosity, and flow resistivity. The experimental results obtained showed the good acoustic performance of esparto fibers, with a high sound absorption coefficient along the usual frequency bandwidth. Furthermore, the theoretical results obtained using the phenomenological model exhibited a strong correlation with the sound absorption spectra obtained through experimental measurements. Full article
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14 pages, 3284 KB  
Article
Changes in Biomass Production, Plant Diversity, and Their Relationship During the Early Establishment of Artificial Alpine Grasslands with Different Species Combinations
by Shu Wang, Runfang Feng, Jikui Ma, Nannan Wang, Linfeng Ji, Xiufen Zhao, Xiaoli Wang, Fei Ren, Honglin Li, Defei Liang, Jing Hu, Xilai Li and Lanping Li
Diversity 2025, 17(5), 341; https://doi.org/10.3390/d17050341 - 12 May 2025
Cited by 1 | Viewed by 832
Abstract
The establishment of artificial grasslands is a highly effective strategy for the rapid restoration of degraded grasslands. To investigate the dynamics of biomass production and plant diversity—two critical objectives of grassland restoration—and their relationship during the early stages of artificial grassland establishment, we [...] Read more.
The establishment of artificial grasslands is a highly effective strategy for the rapid restoration of degraded grasslands. To investigate the dynamics of biomass production and plant diversity—two critical objectives of grassland restoration—and their relationship during the early stages of artificial grassland establishment, we conducted an experiment in Menyuan County, located in the northeastern region of the Qinghai-Tibet Plateau. The experiment involved sowing different combinations of species (one, three, six, and nine species). Using data collected over three years (2021–2023), we found that biomass production generally increased over time. Specifically, in the second year, biomass production exhibited a unimodal relationship with the number of sown species, while in the third year, it increased linearly with the number of sown species. Plant diversity, which includes both sown and naturally occurring species, initially increased with the number of sown species in the first year but decreased in mixed sown plots in the third year. In the first year, biomass production was not correlated with plant diversity, whereas in the second and third years, biomass production decreased as plant diversity increased. This pattern was primarily driven by the accelerated growth of Gramineae. These results highlight the complex dynamics between biomass production and plant diversity during the early stages of artificial alpine grassland establishment. Our findings suggest that a trade-off between biomass and biodiversity should be carefully considered when designing restoration strategies, as achieving both high productivity and biodiversity may require a more nuanced approach. Full article
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16 pages, 9040 KB  
Article
The Essentials of PgPG1, a Polygalacturonase-Encoding Gene for the Invasion of Pyrenophora graminea to Hordeum vulgare
by Erjing Si, Ming Guo, Haiying Liu, Chengdao Li, Juncheng Wang, Lirong Yao, Yaxiong Meng, Xiaole Ma, Baochun Li, Ke Yang, Xunwu Shang and Huajun Wang
Int. J. Mol. Sci. 2025, 26(6), 2401; https://doi.org/10.3390/ijms26062401 - 7 Mar 2025
Cited by 4 | Viewed by 1299
Abstract
Barley leaf stripe, caused by Pyrenophora graminea, significantly reduces yield. Polygalacturonase, a key fungal pectinase, facilitates cell wall degradation for nutrition acquisition and colonization. To determine whether P. graminea contains polygalacturonase (PgPG)-encoding genes and their role in pathogenicity, four PgPG [...] Read more.
Barley leaf stripe, caused by Pyrenophora graminea, significantly reduces yield. Polygalacturonase, a key fungal pectinase, facilitates cell wall degradation for nutrition acquisition and colonization. To determine whether P. graminea contains polygalacturonase (PgPG)-encoding genes and their role in pathogenicity, four PgPG genes (PgPG1PgPG4) were identified in the P. graminea genome. Quantitative RT-PCR revealed that PgPG1 had the highest inducible expression during barley infection, suggesting its critical vital role in pathogenesis. PgPG1 was silenced and overexpressed in P. graminea QWC (wild-type) using CaCl2-PEG4000-mediated protoplast transformation. The PgPG1 RNAi mutants exhibited slower growth, while overexpression mutants grew faster. Relative to the wild-type, the disease incidence of Alexis, a highly susceptible barley variety, decreased by 62.94%, 42.19%, 45.74%, and 40.67% for RNAi mutants, and increased by 12.73%, 12.10%, 12.63%, and 10.31% for overexpression mutants. Pathogenicity analysis showed decreased disease incidence with PgPG1 RNAi mutants and increased severity with overexpression mutants. Trypan blue staining and polygalacturonase activity assays confirmed that overexpression mutants caused more severe damage compared to wild-type and RNAi mutants. These findings indicate that PgPG1 plays a vital role in the pathogenicity of P. graminea in barley and has great potential as a pathogen target gene to develop a durable resistance variety to P. graminea. Full article
(This article belongs to the Special Issue Plant Pathogen Interactions: 2nd Edition)
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23 pages, 12757 KB  
Article
Comparative Genomic Analysis of the Poaceae Cytokinin Response Regulator RRB Gene Family and Functional Characterization of OsRRB5 in Drought Stress Tolerance in Rice
by Rujia Chen, Qianfeng Huang, Yanan Xu, Zhichao Wang, Nian Li, Yue Lu, Tianyun Tao, Yu Hua, Gaobo Wang, Shuting Wang, Hanyao Wang, Yong Zhou, Yang Xu, Pengcheng Li, Chenwu Xu and Zefeng Yang
Int. J. Mol. Sci. 2025, 26(5), 1954; https://doi.org/10.3390/ijms26051954 - 24 Feb 2025
Cited by 1 | Viewed by 1574
Abstract
The cytokinin (CK) type B response regulator (RRB) gene is involved in the CK signaling pathway and performs a key function for mediating reactions to amounts of abiotic stresses. Nevertheless, the RRB gene family remains to be characterized in Poaceae (also [...] Read more.
The cytokinin (CK) type B response regulator (RRB) gene is involved in the CK signaling pathway and performs a key function for mediating reactions to amounts of abiotic stresses. Nevertheless, the RRB gene family remains to be characterized in Poaceae (also known as Gramineae or grasses). Here, we performed a comprehensive analysis encompassing phylogenetic relationships, evolutionary pressures, and expression patterns of the RRB gene family in six Poaceae species, including rice, Panicum, Sorghum, Setaria, maize, and wheat. Phylogenetic tree and syntenic analyses revealed that the RRB genes were divided into seven orthologous gene clusters (OGCs), indicating that the common ancestor of these Poaceae species possessed at least seven RRB genes. Further analysis revealed that the evolution of the Poaceae RRB gene family was primarily driven by purifying selection. The expression pattern of rice OsRRB toward phytohormonal and abiotic stresses was also investigated. The findings revealed that several phytohormones, including cytokinin (CK), abscisic acid (ABA), and methyl jasmonate (MeJA), as well as abiotic factors such as drought and cold, significantly increased the expression levels of these genes. Importantly, haplotype analysis identified four crucial variation sites within the OsRRB5 genomic regions that may contribute to drought resistance in rice. Our findings lay the groundwork for further elucidating the biological function of OsRRB genes and provide a promising new target for developing stress-resistant rice varieties. Full article
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27 pages, 6313 KB  
Article
Genome-Wide Exploration and Characterization of the TCP Gene Family’s Expression Patterns in Response to Abiotic Stresses in Siberian Wildrye (Elymus sibiricus L.)
by Tianqi Liu, Jinghan Peng, Zhixiao Dong, Yingjie Liu, Jiqiang Wu, Yanli Xiong, Changbing Zhang, Lijun Yan, Qingqing Yu, Minghong You, Xiao Ma and Xiong Lei
Int. J. Mol. Sci. 2025, 26(5), 1925; https://doi.org/10.3390/ijms26051925 - 23 Feb 2025
Cited by 1 | Viewed by 1675
Abstract
Siberian wildrye (Elymus sibiricus L.), a model Elymus Gramineae plant, has high eco-economic value but limited seed and forage yield. TCP transcription factors are widely regarded as influencing yield and quality and being crucial for growth and development; still, this gene family [...] Read more.
Siberian wildrye (Elymus sibiricus L.), a model Elymus Gramineae plant, has high eco-economic value but limited seed and forage yield. TCP transcription factors are widely regarded as influencing yield and quality and being crucial for growth and development; still, this gene family in Siberian wildrye remains unexplored. Therefore, this study looked at the Siberian wildrye TCP gene family’s reaction to several abiotic stresses, its expression pattern, and its potential evolutionary path. Fifty-four members of the EsTCP gene family were discovered. There are two major subfamilies based on the phylogenetic tree: 27 of Class I (PCF) and 27 of Class II (12 CIN-type and 15 TB1/CYC-type). Gene structure, conserved motif, and sequence alignment analyses further validated this classification. Cis-elements found in the promoter region of EsTCPs are associated with lots of plant hormones and stress-related reactions, covering drought induction and cold tolerance. EsCYC5, EsCYC6, and EsCYC7 may regulate tillering and lateral branch development. EsPCF10’s relative expression was significant under five stresses. Additionally, eight EsTCP genes are potential miR319 targets. These findings highlight the critical significance of the TCP gene family in Siberian wildrye, laying the groundwork for understanding the function of the EsTCP protein in abiotic stress studies and high-yield breeding. Full article
(This article belongs to the Special Issue Genetic Engineering of Plants for Stress Tolerance, Second Edition)
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13 pages, 2522 KB  
Article
Identification of Leaf Stripe Resistance Genes in Hulless Barley Landrace Teliteqingke from Qinghai-Tibet Plateau
by Zemin Tan, Sai Zhang, Yunfeng Qu, Shenghua Kang, Shiyu Fang and Lu Hou
Int. J. Mol. Sci. 2025, 26(3), 1133; https://doi.org/10.3390/ijms26031133 - 28 Jan 2025
Cited by 2 | Viewed by 1513
Abstract
Leaf stripe disease, caused by Pyrenophora graminea, is a seed-borne fungal disease that significantly impacts hulless barley (Hordeum vulgare var. nudum) production on the Qinghai-Tibet Plateau. This study aimed to identify genetic factors conferring resistance to the leaf stripe by [...] Read more.
Leaf stripe disease, caused by Pyrenophora graminea, is a seed-borne fungal disease that significantly impacts hulless barley (Hordeum vulgare var. nudum) production on the Qinghai-Tibet Plateau. This study aimed to identify genetic factors conferring resistance to the leaf stripe by analyzing an F3 population derived from a cross between the resistant landrace Teliteqingke and the susceptible landrace Dulihuang. Genetic analysis revealed that resistance in Teliteqingke was governed by two dominant genes. Using bulked segregant analysis combined with an SNP array (BSA-SNP) and RNA-seq, we identified two candidate regions on chromosomes 3H and 7H. Further analysis focused on chromosome 3H, which revealed a candidate genomic region containing seven potential disease-resistance genes. Among these, RT-qPCR experiments demonstrated significant expression induction of HORVU.MOREX.r3.3HG0232110.1 (encoding a RING/U-box superfamily protein) and HORVU.MOREX.r3.3HG0232410.1 (encoding a bZIP transcription factor) showed significant expression induction following inoculation with P. graminea. These genes are strong candidates for the resistance mechanism against leaf stripes in Teliteqingke. These results provide a foundation for functional validation of these genes and offer valuable insights for breeding disease-resistant hulless barley. Full article
(This article belongs to the Special Issue Molecular Research Progress of Cereal Crop Disease Resistance)
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