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19 pages, 1069 KB  
Article
Management of Chilli Anthracnose Using Garcinia atroviridis Nanoemulsions Integrated with Trichoderma harzianum
by Yasmeen Siddiqui
Plants 2026, 15(8), 1214; https://doi.org/10.3390/plants15081214 - 15 Apr 2026
Viewed by 255
Abstract
Chilli is a major horticultural crop in tropical and subtropical regions that contributes substantially to the global culinary and economic sectors. However, anthracnose remains one of the most destructive diseases, causing severe losses in both field and stored fruits. Current management strategies offer [...] Read more.
Chilli is a major horticultural crop in tropical and subtropical regions that contributes substantially to the global culinary and economic sectors. However, anthracnose remains one of the most destructive diseases, causing severe losses in both field and stored fruits. Current management strategies offer limited long-term effectiveness, highlighting the need for sustainable alternatives. This study developed nanoemulsions (NEs) from Garcinia atroviridis fruit extract and evaluated their biocontrol potential against Colletotrichum capsici alone and in combination with Trichoderma harzianum. Two formulations, NE4 and NE7, exhibited good thermostability without phase separation at 25 and 54 °C, with droplet sizes of 135.1 and 124.1 nm, respectively, and were non-phytotoxic to chilli seedlings. In vitro, the nanoemulsions significantly suppressed C. capsici mycelial growth (62%) compared to the crude extract. Under rain shelter conditions, NE integrated with T. harzianum (T7 and T8) was highly effective in delaying disease onset and reducing disease severity, achieving 90.07% and 88.37% relative disease reduction, respectively. These treatments also produced the highest marketable yields, comparable to the synthetic fungicide Dithane M-45® (2 g L−1). In contrast, the untreated control group exhibited an 83% yield loss. The results indicate that nanoemulsions of G. atroviridis fruit extract, particularly when combined with T. harzianum, offer a promising and sustainable biological control option for managing pre-harvest chilli anthracnose. Their incorporation into integrated pest management programmes may reduce dependence on chemical fungicides and support safer chilli production systems. Full article
(This article belongs to the Special Issue Bio-Control of Plant Pathogens and Pests)
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32 pages, 3545 KB  
Review
Microbiome-Mediated Cd Stabilization in Chilli Pepper: Roles of Capsaicinoids and Cultivar Genetics Under Environmental Stress
by Irfan Haidri, Qudrat Ullah, Muhammad Qasim, Muhammad Ali Amir, Waqas Haider, Hien Huu Nguyen and Athakorn Promwee
Plants 2026, 15(4), 630; https://doi.org/10.3390/plants15040630 - 16 Feb 2026
Viewed by 938
Abstract
Chilli pepper agroecosystems (Capsicum annuum L.) are increasingly threatened by cadmium (Cd) contamination, with emerging climatic stressors such as drought further exacerbating risks to food safety and crop productivity. This review synthesizes current evidence on microbiome-mediated Cd phytostabilisation in chilli pepper, with [...] Read more.
Chilli pepper agroecosystems (Capsicum annuum L.) are increasingly threatened by cadmium (Cd) contamination, with emerging climatic stressors such as drought further exacerbating risks to food safety and crop productivity. This review synthesizes current evidence on microbiome-mediated Cd phytostabilisation in chilli pepper, with a particular focus on the roles of capsaicinoids and cultivar-specific genetic regulation in shaping rhizosphere microbial communities. Existing studies demonstrate that capsaicinoid-rich cultivars selectively recruit specialized rhizosphere microbes, enhancing root-level Cd sequestration and achieving Cd retention efficiencies of approximately 40–55%, thereby substantially restricting Cd translocation to edible fruit tissues. Multi-strain plant growth-promoting rhizobacteria (PGPR) consortia, especially when combined with structured organic amendments, have been reported to reduce fruit Cd and nickel (Ni) accumulation by more than 87% in contaminated soils. These responses are regulated by pungency-associated genetic loci, including Pun1 (pungency locus 1) and Pun4 (pungency locus 4) genes, which influence secondary metabolism and microbial assembly under metal stress conditions. The review highlights key knowledge gaps regarding the long-term stability of engineered rhizobiomes, the in situ dynamics of the Capsicum volatilome as a microbial recruitment signal, and the interactive effects of Cd contamination and drought in field environments. Overall, this synthesis provides a mechanistic framework for deploying high-pungency cultivars and microbiome-based strategies to improve Cd phytostabilisation, with important implications for sustainable chilli production in drought-prone, metal-contaminated agroecosystems. Full article
(This article belongs to the Section Plant Physiology and Metabolism)
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21 pages, 3016 KB  
Article
Gelatin–Chitosan–PVA Hydrogels Incorporating Trichoderma and Their Application in the Control of Phytopathogens
by Lizbeth de Jesús Martínez-Vela, Mayra Itzcalotzin Montero-Cortés, Joaquín Alejandro Qui-Zapata, Vania Sbeyde Farias-Cervantes, Julio César López-Velázquez, Arturo Moisés Chávez-Rodríguez, Jonathan M. Barba-Godínez and Zaira Yunuen García-Carvajal
Gels 2026, 12(2), 144; https://doi.org/10.3390/gels12020144 - 4 Feb 2026
Viewed by 700
Abstract
The utilization of microorganisms as biocontrol agents represents a sustainable alternative to agrochemicals. Trichoderma spp. has been identified as a fungus that promotes plant growth and suppresses phytopathogens. Nonetheless, conventional commercial formulations are constrained by factors such as their limited shelf life, environmental [...] Read more.
The utilization of microorganisms as biocontrol agents represents a sustainable alternative to agrochemicals. Trichoderma spp. has been identified as a fungus that promotes plant growth and suppresses phytopathogens. Nonetheless, conventional commercial formulations are constrained by factors such as their limited shelf life, environmental sensitivity, and inadequate carrier systems. In this study, Trichoderma harzianum (T22) and T. viride (T18) strains were encapsulated in a hydrogel composed of chitosan, gelatin, and polyvinyl alcohol, which was prepared by pH-induced gelation via alkaline precipitation. The characterization of the hydrogels was conducted in several domains. Initially, the water absorption of the samples was examined at varying pH values. Secondly, the morphology of the samples was investigated using scanning electron microscopy (SEM) and stereo microscopy. Thirdly, the chemical interactions in the hydrogels were analyzed by Fourier-transform infrared spectroscopy (FTIR). The final stage of the experiment involved assessing the degradation behaviour of the hydrogels in both sterile and inoculated soils. The efficacy of the isolates in protecting chilli plants from Phytophthora capsici was subsequently evaluated. As demonstrated in the extant research, encapsulation techniques have been shown to preserve the viability of fungal organisms and promote their growth after 10 days of storage at ambient temperature. These effects have been observed to exhibit strain-dependent variations. It is noteworthy that hydrogels loaded with T. viride (HT18) induced resistance against P. capsici, resulting in complete symptom suppression and enhanced plant growth, whereas hydrogels loaded with T. harzianum (HT22) showed no protective effect. These results demonstrate the potential of the hydrogel formulated with T18 as an effective carrier, as it maintains Trichoderma spp. viability and protects chilli plants against P. capsici infection. Full article
(This article belongs to the Special Issue Recent Advances in Biopolymer Gels (2nd Edition))
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27 pages, 2081 KB  
Review
Spicy Personality: On the Relationship Between Personality Traits and the Preference for Spicy Foods
by Ceyhun Uçuk and Charles Spence
Foods 2026, 15(3), 559; https://doi.org/10.3390/foods15030559 - 4 Feb 2026
Viewed by 1754
Abstract
This narrative historical review assesses the relationship between personality traits and the preference for spicy foods. While genetic, cultural, and personality factors have all been shown to influence taste preferences, the evidence that has been published to date suggests that personality plays a [...] Read more.
This narrative historical review assesses the relationship between personality traits and the preference for spicy foods. While genetic, cultural, and personality factors have all been shown to influence taste preferences, the evidence that has been published to date suggests that personality plays a greater role in the liking and consumption of spicy food than for those basic tastes linked to the essential elements of a healthy diet. Archaeological and historical data illustrate the global dissemination and cultural integration of Capsicum into the human diet. Meanwhile, physiological and psychophysical research highlight that the pungent quality of capsaicin, together with the gustatory and olfactory cues associated with the flavour of chilli, affects hedonic evaluation, with repeated exposure often increasing acceptance through a process of desensitisation. Developmental factors, such as prenatal taste/flavour transmission and benign risk learning during childhood, underpin adult preferences. Cross-cultural studies reveal that the tolerance for pungency varies by country/culture and is also markedly shaped by personality traits. Recent social media trends have also increased some people’s exposure to very spicy foods, linked to their sensation-seeking tendencies. As such, those theories that focus solely on biological sensitivity and cultural exposure likely fail to capture personality-driven factors like sensation seeking and reward sensitivity that drive the liking for spicy foods. Full article
(This article belongs to the Section Sensory and Consumer Sciences)
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13 pages, 2339 KB  
Article
Molecular Identification and Pathogenicity of a Chilli Veinal Mottle Virus Isolate from Sichuan, China
by Cheng Chen, Daihua Lu, Xiaotong Lin, Xueping Zhou and Xiuling Yang
Int. J. Mol. Sci. 2026, 27(2), 1113; https://doi.org/10.3390/ijms27021113 - 22 Jan 2026
Viewed by 562
Abstract
Chilli veinal mottle virus (ChiVMV) is an important potyvirus that poses a serious threat to crop production. In this study, small RNA sequencing and molecular cloning were used to obtain the complete genome sequence of a ChiVMV isolate identified in pepper plants in [...] Read more.
Chilli veinal mottle virus (ChiVMV) is an important potyvirus that poses a serious threat to crop production. In this study, small RNA sequencing and molecular cloning were used to obtain the complete genome sequence of a ChiVMV isolate identified in pepper plants in Sichuan (SC1 isolate). Molecular evolutionary and phylogenetic analysis of SC1 and 35 ChiVMV isolates revealed four clades of ChiVMV isolates. Recombination analysis found 23 recombinant events and 28 recombinants, with the SC1 isolate arising from the recombination of the PK isolate from Pakistan and the YNpe isolate from Yunnan, China. A full-length infectious cDNA clone of ChiVMV was constructed and demonstrated to be infectious in both Nicotiana benthamiana and pepper plants. Moreover, a Myc-tag was inserted after NIb, and the derived infectious clone of ChiVMV remained infectious, and NIb-Myc was readily expressed in infected host plants. These reverse genetic tools will promote the study of the function of ChiVMV-encoded proteins, especially the NIb protein, and facilitate basic and translational studies of ChiVMV. Full article
(This article belongs to the Section Molecular Microbiology)
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30 pages, 6863 KB  
Article
Explainable Deep Learning and Edge Inference for Chilli Thrips Severity Classification in Strawberry Canopies
by Uchechukwu Ilodibe, Daeun Choi, Sriyanka Lahiri, Changying Li, Daniel Hofstetter and Yiannis Ampatzidis
Agriculture 2026, 16(2), 252; https://doi.org/10.3390/agriculture16020252 - 19 Jan 2026
Viewed by 623
Abstract
Traditional plant scouting is often a costly and labor-intensive task that requires experienced specialists to diagnose and manage plant stresses. Artificial intelligence (AI), particularly deep learning and computer vision, offers the potential to transform scouting by enabling rapid, non-intrusive detection and classification of [...] Read more.
Traditional plant scouting is often a costly and labor-intensive task that requires experienced specialists to diagnose and manage plant stresses. Artificial intelligence (AI), particularly deep learning and computer vision, offers the potential to transform scouting by enabling rapid, non-intrusive detection and classification of early stress symptoms from plant images. However, deep learning models are often opaque, relying on millions of parameters to extract complex nonlinear features that are not interpretable by growers. Recently, eXplainable AI (XAI) techniques have been used to identify key spatial regions that contribute to model predictions. This project explored the potential of convolutional neural networks (CNNs) for classifying the severity of chilli thrips damage in strawberry plants in Florida and employed XAI techniques to interpret model decisions and identify symptom-relevant canopy features. Four CNN architectures, YOLOv11, EfficientNetV2, Xception, and MobileNetV3, were trained and evaluated using 2353 square RGB canopy images of different sizes (256, 480, 640 and 1024 pixels) to classify symptoms as healthy, moderate, or severe. Trade-offs between image size, model parameter count, inference speed, and accuracy were examined in determining the best-performing model. The models achieved accuracies ranging from 77% to 85% with inference times of 5.7 to 262.3 ms, demonstrating strong potential for real-time pest severity estimation. Gradient-Weighted Class Activation Mapping (Grad-CAM) visualization revealed that model attention focused on biologically relevant regions such as fruits, stems, leaf edges, leaf surfaces, and dying leaves, areas commonly affected by chilli thrips. Subsequent analysis showed that model attention spread from localized regions in healthy plants to wide diffuse regions in severe plants. This alignment between model attention and expert scouting logic suggests that CNNs internalize symptom-specific visual cues and can reliably classify pest-induced plant stress. Full article
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5 pages, 978 KB  
Proceeding Paper
Non-Formal, Experiential Learning and Agritourism: The Case of “The Chilli Factor Organic Farm’’
by Georgios Karanagnostis, Maria Partalidou, George Malandrakis and Konstantinos Papaspyropoulos
Proceedings 2026, 134(1), 39; https://doi.org/10.3390/proceedings2026134039 - 12 Jan 2026
Viewed by 335
Abstract
The aim of this research is to elaborate on the activities of non-formal experiential learning in agritourism developed by an organic family farm in Thessaloniki, Greece. Based on a qualitative approach, in-depth interviews with the owners of the farm and a Business Model [...] Read more.
The aim of this research is to elaborate on the activities of non-formal experiential learning in agritourism developed by an organic family farm in Thessaloniki, Greece. Based on a qualitative approach, in-depth interviews with the owners of the farm and a Business Model Canvas (BMC) approach to this case study, the results indicate that workshops, seminars on nutrition, environmental conservation activities, plant identification, hands-on activities for children and cooking lessons with chefs are some of the non-formal learning tools. The aforementioned activities, on the one hand, raise gate sales for the family and, on the other hand, promote knowledge and awareness towards the contemporary environmental challenges that the rural areas and our food chain are facing. Future development strategies were also identified through the BMC, such as the adoption of digital educational tools, and ‘Do It Yourself’ kits for growing microgreens at home, while the need for official certification and support of multifunctional farms by the Ministry of Rural Development was also highlighted. Full article
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7 pages, 820 KB  
Proceeding Paper
Potential of Open-Pollinated Varieties (OPVs) in Chilli Crop Breeding—A Review
by Israr Ali, Muhammad Azam Khan, Muhammad Tahir Akram, Rashid Mehmood Rana, Inaba Hawraa, Hina Nawaz and Feroz Ahmed Tipu
Biol. Life Sci. Forum 2025, 51(1), 11; https://doi.org/10.3390/blsf2025051011 - 6 Jan 2026
Viewed by 683
Abstract
The research for crop improvement is a continuous process that enhances plant quality, yield, and ameliorates their adaptability to changing climatic conditions. Chilli is cultivated worldwide as a vegetable, spice, or natural colour additive and is an economically and medicinally important crop. A [...] Read more.
The research for crop improvement is a continuous process that enhances plant quality, yield, and ameliorates their adaptability to changing climatic conditions. Chilli is cultivated worldwide as a vegetable, spice, or natural colour additive and is an economically and medicinally important crop. A basic requirement for crop improvement in breeding programmes is the presence of genetic diversity within the crop. Smallholder farmers of chilli usually face challenges in acquiring commercial hybrid seeds because of their high cost and the need for annual purchases. Open-pollinated varieties (OPVs) can serve as a sustainable alternative that provides broader genetic variability, allowing adaptation to local growing conditions, and enabling farmers to save seeds for successive planting season. These characteristics make OPVs economically viable and valuable genetic resources for future chilli cultivation and breeding programmes. This review highlights the potential of OPVs in promoting sustainable chilli cultivation, enhancing genetic diversity, and supporting breeding to develop resilient and economically viable cultivars. Full article
(This article belongs to the Proceedings of The 9th International Horticulture Conference & Expo)
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10 pages, 1644 KB  
Proceeding Paper
Heat Stress in Chillies: Integrating Physiological Responses and Heterosis Breeding Approaches for Enhanced Resilience
by Inaba Hawraa, Muhammad Azam Khan, Muhammad Tahir Akram, Rashid Mehmood Rana, Feroz Ahmed Tipu, Israr Ali, Hina Nawaz and Muhammad Hashir Khan
Biol. Life Sci. Forum 2025, 51(1), 12; https://doi.org/10.3390/blsf2025051012 - 6 Jan 2026
Viewed by 858
Abstract
Chilli (Capsicum annuum) is a popular spice and vegetable crop of significant economic importance that is cultivated worldwide in warm and humid climatic zones. Although chilli is a thermophilic crop, its quality and yield potential are significantly affected due to various [...] Read more.
Chilli (Capsicum annuum) is a popular spice and vegetable crop of significant economic importance that is cultivated worldwide in warm and humid climatic zones. Although chilli is a thermophilic crop, its quality and yield potential are significantly affected due to various abiotic factors, including extremely fluctuating temperatures beyond the optimum temperatures (18–30 °C). Global warming and anthropogenic activities lead to adverse climatic changes, imposing severe stress on growth, development, and productivity. High temperatures above 43–45 °C adversely affect chilli crops, especially during the reproductive stages, by causing immature fruit dropping, poor seed vigour, reduced number of flowers, flower abscission, aborted reproductive organs, reduced fruit set, and significant yield loss by 50%. Therefore, to reduce quantitative and qualitative losses, heat management is necessary from April to June in Pakistan, when the temperature rises beyond 40 °C. For heat management, the hybridisation of heat-resilient and high-yielding genotypes to develop heat-tolerant high-yielding hybrids appears to be a rational approach. These genetically improved hybrids inherit such characteristics that assist in maintaining vigorous growth, fruit quality, and stable yield without significant yield losses even under heat-stressed conditions. Hence, the thermotolerant chilli hybrids developed through hybridisation help to satisfy the escalating demand for chilli and guarantee the financial stability of farmers. Full article
(This article belongs to the Proceedings of The 9th International Horticulture Conference & Expo)
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19 pages, 365 KB  
Review
Mycotoxins Occurrence in Herbs, Spices, Dietary Supplements, and Their Exposure Assessment
by Joanna Kanabus, Marcin Bryła, Krystyna Leśnowolska-Wnuczek, Agnieszka Waśkiewicz and Magdalena Twarużek
Toxins 2026, 18(1), 20; https://doi.org/10.3390/toxins18010020 - 29 Dec 2025
Viewed by 1646
Abstract
Mycotoxins are toxic secondary metabolites produced mainly by filamentous fungi of the genera Aspergillus, Penicillium, and Fusarium and pose a significant food safety concern. This review summarizes current literature on the occurrence of major regulated and emerging mycotoxins, including aflatoxins, ochratoxin [...] Read more.
Mycotoxins are toxic secondary metabolites produced mainly by filamentous fungi of the genera Aspergillus, Penicillium, and Fusarium and pose a significant food safety concern. This review summarizes current literature on the occurrence of major regulated and emerging mycotoxins, including aflatoxins, ochratoxin A, fumonisins, trichothecenes, zearalenone, and selected Fusarium and Alternaria metabolites, in herbs, spices, and plant-based dietary supplements. Available data indicate that spices—particularly chilli, paprika, ginger, and various types of pepper—represent high-risk commodities and are often more heavily contaminated than dried herbs. Although reported concentrations of individual mycotoxins are frequently low to moderate, numerous studies highlight the common co-occurrence of multiple toxins within a single product, raising concerns regarding cumulative and combined toxic effects. Dietary supplements, especially those containing concentrated plant extracts such as green tea or green coffee, are also identified as potential sources of multi-mycotoxin exposure. The review outlines key analytical approaches for mycotoxin determination, emphasizing the critical role of sample preparation for chromatographic analysis in complex plant matrices. Despite increasing evidence of contamination, important knowledge gaps persist regarding emerging mycotoxins, underrepresented botanical matrices, and long-term exposure assessment, while regulatory limits remain incomplete or inconsistent. Continued monitoring and harmonized analytical and risk assessment strategies are, therefore, essential to ensure consumer safety. Full article
(This article belongs to the Section Mycotoxins)
24 pages, 957 KB  
Article
An In-Depth Exploration of the BELONG Conceptual Model of Engineering Persistence
by Gail Baura, Leanne Kallemeyn, Erika Esmeralda de la Riva, Andrea Hercules and Matthew J. Miller
Educ. Sci. 2025, 15(12), 1604; https://doi.org/10.3390/educsci15121604 - 27 Nov 2025
Viewed by 575
Abstract
At Loyola University Chicago, the B.S. Engineering program graduates about 53% women annually, which is much higher than the United States’ average of 25%. In this paper, Loyola University Chicago’s BELONG (Becoming Engineers Leading Our Next Generation) Conceptual Model of Engineering Persistence is [...] Read more.
At Loyola University Chicago, the B.S. Engineering program graduates about 53% women annually, which is much higher than the United States’ average of 25%. In this paper, Loyola University Chicago’s BELONG (Becoming Engineers Leading Our Next Generation) Conceptual Model of Engineering Persistence is described. Grounded in social cognitive career theory, the BELONG model inputs collaborative program structures and uses sense of belonging to explain engineering persistence. Program structures that minimize the chilly climate of engineering for women, particularly those administered during the first undergraduate semester, are described. To explore the model, qualitative semi-structured interviews with self-identified women of color were conducted to gain an in-depth understanding of their program experiences during their first semester. After applying emergent, focused, and thematic coding, results revealed student experiences and understandings of engineering self-efficacy, outcome expectations, interest, sense of belonging, and experiences of program structures. Results support the BELONG model, an approach that addresses the exclusion of women in engineering through program structures and rethinks and repositions engineering education as a more inclusive environment. Full article
(This article belongs to the Special Issue Rethinking Engineering Education)
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16 pages, 2190 KB  
Article
Functional Analysis of the Pathogenesis-Related Protein 1 (CaPR1) Gene in the Pepper Response to Chilli veinal mottle virus (ChiVMV) Infection
by Chunzi Huang, Zengjing Zhao, Xing Wu, Hu Zhao, Meng Wang, Zhi He, Zongjun Li, Lihao Wang, Yafei Tang, Risheng Wang, Longfei He and Mingxia Gong
Viruses 2025, 17(11), 1456; https://doi.org/10.3390/v17111456 - 31 Oct 2025
Cited by 1 | Viewed by 1019
Abstract
Chilli veinal mottle virus (ChiVMV) causes severe yield losses in pepper across Asia. It is very urgent to study the host plant resistance to control this viral disease. As a type of defense response gene, pathogenesis-related protein 1 (PR1) is a well-established defense [...] Read more.
Chilli veinal mottle virus (ChiVMV) causes severe yield losses in pepper across Asia. It is very urgent to study the host plant resistance to control this viral disease. As a type of defense response gene, pathogenesis-related protein 1 (PR1) is a well-established defense marker against fungal/bacterial pathogens, and its role in virus resistance remains unclear. Here, we cloned CaPR1 from the ChiVMV-highly resistant pepper variety ‘Perennial’. The 477 bp ORF encodes a 17.65 kDa basic protein containing a conserved CAP-PR1 domain. The subcellular localization of CaPR1 revealed that it was located in the plasma membrane, endoplasmic reticulum (ER), and nucleus. RT-qPCR revealed leaf-predominant expression, with earlier and stronger induction in the highly resistant than the highly susceptible variety after ChiVMV inoculation (6.4-fold at 2 days post-inoculation). The overexpression of CaPR1 in tobacco significantly increased resistance, reducing disease index by 25% and viral coat protein accumulation. Our findings identified CaPR1 as a positive regulator of ChiVMV resistance, providing a molecular target for pepper breeding. In addition, exogenous SA treatment increased the resistance of the highly susceptible cultivar ‘Guijiao 12’ to ChiVMV, and 0.25 mM had a greater effect. Full article
(This article belongs to the Special Issue Emerging and Reemerging Plant Viruses in a Changing World)
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22 pages, 10850 KB  
Article
Analysis of Colored Lesions of Chilli Yellow Ringspot Orthotospovirus Infection in Tomato Fruits
by Yu Li, Jie Zhang, Kuo Wu, Yongdui Chen, Tiantian Wang and Zhongkai Zhang
Viruses 2025, 17(11), 1426; https://doi.org/10.3390/v17111426 - 27 Oct 2025
Viewed by 705
Abstract
Chilli yellow ringspot orthotospovirus (CYRSV) causes colored lesions in tomato fruits. In this study, tomato fruits with different-colored lesions were used as experimental materials to explore the color formation mechanism. After CYSRV infection, the structure of chromoplasts inside the cells of tomato fruits [...] Read more.
Chilli yellow ringspot orthotospovirus (CYRSV) causes colored lesions in tomato fruits. In this study, tomato fruits with different-colored lesions were used as experimental materials to explore the color formation mechanism. After CYSRV infection, the structure of chromoplasts inside the cells of tomato fruits was distorted and the number of plastoglobules per chromoplast significantly decreased, but the plastoglobule areas increased, as determined via ultrathin sectioning and transmission electron microscopy. Transcriptome and metabolome analyses revealed enrichment of secondary metabolites, carotenoids, and flavonoids in tomatoes with colored lesions. Metabolome analysis revealed markedly reduced carotenoid metabolites (lycopene and α-carotene) in both red-yellow and yellow tomatoes. The flavonoid metabolites rutin, catechin, and naringenin chalcone were markedly increased in the yellow group only. RT-qPCR analysis revealed that the expression of genes involved in carotenoid and flavonoid synthesis increased, but the expression of C4H decreased. Transcription regulators such as AP2 and MYB12 play important roles in flavonoid and carotenoid biosynthesis in CYRSV-infected tomato fruits. The results of greenhouse isolation experiments revealed that CYRSV may induce color lesions via decreases in plastoglobule numbers and chromoplast areas, the absence of carotenoid metabolites, and the presence of yellow-colored flavonoid metabolites. These results provide new insights into the interaction between CYRSV and tomato plants. Full article
(This article belongs to the Section Viruses of Plants, Fungi and Protozoa)
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31 pages, 7541 KB  
Article
Harnessing Bacillus subtilis–Moss Synergy: Carbon–Structure Optimization for Erosion-Resistant Barrier Formation in Cold Mollisols
by Tianxiao Li, Shunli Zheng, Zhaoxing Xiao, Qiang Fu, Fanxiang Meng, Mo Li, Dong Liu and Qingyuan Liu
Agriculture 2025, 15(14), 1465; https://doi.org/10.3390/agriculture15141465 - 8 Jul 2025
Viewed by 1120
Abstract
Soil degradation exerts profound impacts on soil ecological functions, global food security, and human development, making the development of effective technologies to mitigate degradation a critical research focus. Microorganisms play a leading role in rehabilitating degraded land, improving soil hydraulic properties, and enhancing [...] Read more.
Soil degradation exerts profound impacts on soil ecological functions, global food security, and human development, making the development of effective technologies to mitigate degradation a critical research focus. Microorganisms play a leading role in rehabilitating degraded land, improving soil hydraulic properties, and enhancing soil structural stability. Mosses contribute to soil particle fixation through their unique rhizoid structures; however, the mechanisms underlying their interactions in mixed inoculation remain unclear. Therefore, this study addresses soil and water loss caused by rainfall erosion in the cold black soil region. We conducted controlled laboratory experiments cultivating Bacillus subtilis and cold-adapted moss species, evaluating the erosion mitigation effects of different biological treatments under gradient slopes (3°, 6°, 9°) and rainfall intensities (70 mm h−1, 120 mm h−1), and elucidating their carbon-based structural reinforcement mechanism. The results indicated that compared to the control group, Treatment C significantly increased the mean weight diameter (MWD) and geometric mean diameter (GMD) of soil aggregates by 121.6% and 76.75%, respectively. In separate simulated rainfall events at 70 mm h−1 and 120 mm h−1, Treatment C reduced soil loss by 95.70% and 96.75% and decreased runoff by 38.31% and 67.21%, respectively. Crucially, the dissolved organic carbon (DOC) loss rate in Treatment C was only 21.98%, significantly lower than that in Treatment A (32.32%), Treatment B (22.22%), and the control group (51.07%)—representing a 59.41% reduction compared to the control. This demonstrates the following: (1) Bacillus subtilis enhances microbial metabolism, driving carbon conversion into stable pools, while mosses reduce carbon leaching via physical barriers, synergistically forming a dual “carbon protection–structural reinforcement” barrier. (2) The combined inoculation optimizes soil structure by increasing the proportion of large soil particles and enhancing aggregate stability, effectively suppressing soil loss even under extreme rainfall erosion. This study elucidates, for the first time, the biological pathway through which microbe–moss interactions achieve synergistic carbon sequestration and erosion resistance by regulating aggregate formation and pore water dynamics. It provides a scalable “carbon–structure”-optimized biotechnology system (co-inoculation of Bacillus subtilis and moss) for the ecological restoration of the cold black soil region. Full article
(This article belongs to the Section Agricultural Soils)
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19 pages, 3327 KB  
Article
YOLOv8m for Automated Pepper Variety Identification: Improving Accuracy with Data Augmentation
by Madalena de Oliveira Barbosa, Fernanda Pereira Leite Aguiar, Suely dos Santos Sousa, Luana dos Santos Cordeiro, Irenilza de Alencar Nääs and Marcelo Tsuguio Okano
Appl. Sci. 2025, 15(13), 7024; https://doi.org/10.3390/app15137024 - 22 Jun 2025
Cited by 4 | Viewed by 2192
Abstract
This research addresses the critical need for an efficient and precise identification of Capsicum spp. fruit varieties within the post-harvest contexts to enhance quality control and ensure consumer satisfaction. Employing the YOLOv8m convolutional neural network, the study identified eight distinct pepper varieties: Pimento, [...] Read more.
This research addresses the critical need for an efficient and precise identification of Capsicum spp. fruit varieties within the post-harvest contexts to enhance quality control and ensure consumer satisfaction. Employing the YOLOv8m convolutional neural network, the study identified eight distinct pepper varieties: Pimento, Bode, Cambuci, Chilli, Fidalga, Habanero, Jalapeno, and Scotch Bonnet. A dataset comprising 1476 annotated images was utilized and significantly expanded through data augmentation techniques, including rotation, flipping, and contrast adjustments. Comparative analysis reveals that training with the augmented dataset yielded significant improvements across key performance indicators, particularly in box precision, recall, and mean average precision (mAP50 and mAP95), underscoring the effectiveness of data augmentation. These findings underscore the considerable potential of CNNs to advance the AgriFood sector through increased automation and efficiency. While acknowledging the constraints of a controlled image dataset, subsequent research should prioritize expanding the dataset and conducting real-world testing to confirm the model’s robustness across various environmental factors. This study contributes to the field by illustrating the application of deep learning methodologies to enhance agricultural productivity and inform decision-making. Full article
(This article belongs to the Special Issue Advances in Automation and Controls of Agri-Food Systems)
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