Announcements

Proteomes (ISSN: 2227-7382) is an open access, peer-reviewed journal centered around all aspects of proteome analysis, with a special focus on the quantification and characterisation of the proteome at the level of proteoforms and the functional biological units of canonical amino acid sequences.

As all the articles published in our journal are in an open access format, you have free and unlimited access to the full text. We welcome you to read the most viewed papers published in 2023 listed below.

1. “Spatial Proteomics for the Molecular Characterization of Breast Cancer”
by Klára Brožová, Brigitte Hantusch, Lukas Kenner and Klaus Kratochwill
Proteomes 2023, 11(2), 17; https://doi.org/10.3390/proteomes11020017
Full text available online: https://www.mdpi.com/2227-7382/11/2/17

2. “Proteomics-Based Identification of Dysregulated Proteins and Biomarker Discovery in Invasive Ductal Carcinoma, the Most Common Breast Cancer Subtype”
by Anca-Narcisa Neagu, Danielle Whitham, Logan Seymour, Norman Haaker, Isabella Pelkey and Costel C. Darie
Proteomes 2023, 11(2), 13; https://doi.org/10.3390/proteomes11020013
Full text available online: https://www.mdpi.com/2227-7382/11/2/13

3. “Proteomic Research of Extracellular Vesicles in Clinical Biofluid”
by Shipan Fan and Ansgar Poetsch
Proteomes 2023, 11(2), 18; https://doi.org/10.3390/proteomes11020018
Full text available online: https://www.mdpi.com/2227-7382/11/2/18

4. “Network-Based Prediction of Side Effects of Repurposed Antihypertensive Sartans against COVID-19 via Proteome and Drug-Target Interactomes”
by Despoina P. Kiouri, Charalampos Ntallis, Konstantinos Kelaidonis, Massimiliano Peana, Sotirios Tsiodras, Thomas Mavromoustakos, Alessandro Giuliani, Harry Ridgway, Graham J. Moore, John M. Matsoukas et al.
Proteomes 2023, 11(2), 21; https://doi.org/10.3390/proteomes11020021
Full text available online: https://www.mdpi.com/2227-7382/11/2/21

5. “Proteomics Methodologies: The Search of Protein Biomarkers Using Microfluidic Systems Coupled to Mass Spectrometry”
by Isabel De Figueiredo, Bernard Bartenlian, Guillaume Van der Rest, Antoine Pallandre and Frédéric Halgand
Proteomes 2023, 11(2), 19; https://doi.org/10.3390/proteomes11020019
Full text available online: https://www.mdpi.com/2227-7382/11/2/19

6. “Optimized Proteome Reduction for Integrative Top–Down Proteomics”
by Breyer Woodland, Aleksandar Necakov and Jens R. Coorssen
Proteomes 2023, 11(1), 10; https://doi.org/10.3390/proteomes11010010
Full text available online: https://www.mdpi.com/2227-7382/11/1/10

7. “Shotgun Proteomics of Co-Cultured Leukemic and Bone Marrow Stromal Cells from Different Species as a Preliminary Approach to Detect Intercellular Protein Transfer”
by Abraham Josué Nevárez-Ramírez, Ana Laura Guzmán-Ortiz, Pedro Cortes-Reynosa, Eduardo Perez-Salazar, Gustavo Alberto Jaimes-Ortega, Ricardo Valle-Rios, Álvaro Marín-Hernández, José S. Rodríguez-Zavala, Eliel Ruiz-May, José Luis Castrejón-Flores et al.
Proteomes 2023, 11(2), 15; https://doi.org/10.3390/proteomes11020015
Full text available online: https://www.mdpi.com/2227-7382/11/2/15

8. “Analysis of the Interactome of the Toxoplasma gondii Tgj1 HSP40 Chaperone”
by Jonathan Munera López, Andrés Mariano Alonso, Maria Julia Figueras, Ana María Saldarriaga Cartagena, Miryam A. Hortua Triana, Luis Diambra, Laura Vanagas, Bin Deng, Silvia N. J. Moreno and Sergio Oscar Angel
Proteomes 2023, 11(1), 9; https://doi.org/10.3390/proteomes11010009
Full text available online: https://www.mdpi.com/2227-7382/11/1/9

9. “Proteomics-Driven Biomarkers in Pancreatic Cancer”
by Luís Ramalhete, Emanuel Vigia, Rúben Araújo and Hugo Pinto Marques
Proteomes 2023, 11(3), 24; https://doi.org/10.3390/proteomes11030024
Full text available online: https://www.mdpi.com/2227-7382/11/3/24

10. “Deep Learning in Phosphoproteomics: Methods and Application in Cancer Drug Discovery”
by Neha Varshney and Abhinava K. Mishra
Proteomes 2023, 11(2), 16; https://doi.org/10.3390/proteomes11020016
Full text available online: https://www.mdpi.com/2227-7382/11/2/16

11. “The Double-Edged Proteins in Cancer Proteomes and the Generation of Induced Tumor-Suppressing Cells (iTSCs)”
by Kexin Li, Qingji Huo, Bai-Yan Li and Hiroki Yokota
Proteomes 2023, 11(1), 5; https://doi.org/10.3390/proteomes11010005
Full text available online: https://www.mdpi.com/2227-7382/11/1/5

12. “Comprehensive Kinase Activity Profiling Revealed the Kinase Activity Patterns Associated with the Effects of EGFR Tyrosine Kinase Inhibitor Therapy in Advanced Non-Small-Cell Lung Cancer Patients with Sensitizing EGFR Mutations”
by Rei Noguchi, Akihiro Yoshimura, Junji Uchino, Takayuki Takeda, Yusuke Chihara, Takayo Ota, Osamu Hiranuma, Hiroshi Gyotoku, Koichi Takayama and Tadashi Kondo
Proteomes 2023, 11(1), 6; https://doi.org/10.3390/proteomes11010006
Full text available online: https://www.mdpi.com/2227-7382/11/1/6

13. “Identification of Plasma Biomarkers from Rheumatoid Arthritis Patients Using an Optimized Sequential Window Acquisition of All THeoretical Mass Spectra (SWATH) Proteomics Workflow”
by Liang Jin, Fei Wang, Xue Wang, Bohdan P. Harvey, Yingtao Bi, Chenqi Hu, Baoliang Cui, Anhdao T. Darcy, John W. Maull, Ben R. Phillips et al.
Proteomes 2023, 11(4), 32; https://doi.org/10.3390/proteomes11040032
Full text available online: https://www.mdpi.com/2227-7382/11/4/32

14. “A Multi-Level Systems Biology Analysis of Aldrin’s Metabolic Effects on Prostate Cancer Cells”
by Carmen Bedia, Nuria Dalmau, Lars K. Nielsen, Romà Tauler and Igor Marín de Mas
Proteomes 2023, 11(2), 11; https://doi.org/10.3390/proteomes11020011
Full text available online: https://www.mdpi.com/2227-7382/11/2/11

15. “Non-Specific Signal Peptidase Processing of Extracellular Proteins in Staphylococcus aureus N315”
by Santosh A. Misal, Shital D. Ovhal, Sujun Li, Jonathan A. Karty, Haixu Tang, Predrag Radivojac and James P. Reilly
Proteomes 2023, 11(1), 8; https://doi.org/10.3390/proteomes11010008
Full text available online: https://www.mdpi.com/2227-7382/11/1/8

16. “Unveiling the Molecular Footprint: Proteome-Based Biomarkers for Alzheimer’s Disease”
by Mukul Jain, Rupal Dhariwal, Nil Patil, Sandhya Ojha, Reshma Tendulkar, Mugdha Tendulkar, Parmdeep Singh Dhanda, Alpa Yadav and Prashant Kaushik
Proteomes 2023, 11(4), 33; https://doi.org/10.3390/proteomes11040033
Full text available online: https://www.mdpi.com/2227-7382/11/4/33

17. “Enzymatic Investigation of Spongospora subterranea Zoospore Attachment to Roots of Potato Cultivars Resistant or Susceptible to Powdery Scab Disease”
by Xian Yu, Richard Wilson, Alieta Eyles, Sadegh Balotf, Robert Stephen Tegg and Calum Rae Wilson
Proteomes 2023, 11(1), 7; https://doi.org/10.3390/proteomes11010007
Full text available online: https://www.mdpi.com/2227-7382/11/1/7

18. “Changes in the Saliva Proteome of Pigs with Diarrhoea Caused by Escherichia coli”
by Miguel Rodrigues, Maria José López-Martinez, Alba Ortin-Bustillo, Jose Joaquin Cerón, Silvia Martinez-Subiela, Alberto Muñoz-Prieto and Elsa Lamy
Proteomes 2023, 11(2), 14; https://doi.org/10.3390/proteomes11020014
Full text available online: https://www.mdpi.com/2227-7382/11/2/14

19. “Oncogenic Proteomics Approaches for Translational Research and HIV-Associated Malignancy Mechanisms”
by Eduardo Alvarez-Rivera, Emanuel J. Ortiz-Hernández, Elyette Lugo, Lorraine M. Lozada-Reyes and Nawal M. Boukli
Proteomes 2023, 11(3), 22; https://doi.org/10.3390/proteomes11030022
Full text available online: https://www.mdpi.com/2227-7382/11/3/22

20. “Oxidative Stress Induced Dysfunction of Protein Synthesis in 661W Mice Photoreceptor Cells”
by Liting Deng, Vivek Gupta, Morteza Abyadeh, Nitin Chitranshi, Kanishka Pushpitha, Yunqi Wu, Veer Gupta, Yuyi You, Joao A. Paulo, Stuart L. Graham et al.
Proteomes 2023, 11(2), 12; https://doi.org/10.3390/proteomes11020012
Full text available online: https://www.mdpi.com/2227-7382/11/2/12

For more articles, please visit the following link: https://www.mdpi.com/journal/proteomes/most_cited.