You are currently on the new version of our website. Access the old version .

Pathogens

Pathogens is an international, peer-reviewed, open access journal on pathogens and pathogen-host interactions published monthly online by MDPI.

Indexed in PubMed | Quartile Ranking JCR - Q2 (Microbiology)

All Articles (8,979)

Urinary tract infections (UTIs) and urolithiasis exhibit a complex bidirectional relationship in which microbial colonization and urinary obstruction may mutually reinforce each other. This retrospective observational study evaluated clinical and microbiological factors associated with UTI in patients with urolithiasis using a large institutional dataset. A total of 23,241 urine cultures obtained from 12,708 unique patients were analyzed, comparing individuals with and without urolithiasis. In stone-forming patients, demographic variables, urine pH, hydronephrosis, ureteral double J stent presence and indwelling duration, urinary anomalies, and stone characteristics were assessed. Logistic regression identified independent associations, and ROC analysis defined optimal risk thresholds. UTI were more frequent in the stone group (34.5%) compared with non-stone forming patients (28.9%, p < 0.001). Escherichia coli was the most common uropathogen overall, whereas Klebsiella pneumoniae, Enterococcus faecalis, and Pseudomonas aeruginosa were significantly enriched in patients with stones. Elevated urine pH (OR: 6.37; CI: 2.67–15.19; p = 0.001) and hydronephrosis (OR: 9.14; CI: 3.74–22.35; p = 0.001) were independently associated with UTI. A stent dwell time above 29.5 days was associated with infection with 85% sensitivity and 54% specificity (AUC: 0.70; CI: 0.68–0.73), and urine pH 6.2 or higher was associated with infection with 86% sensitivity and 67% specificity (AUC: 0.77; CI: 0.75–0.80). These findings underscore that urine alkalinity, obstruction, and prolonged stenting are key factors associated with infection risk, supporting the need for careful stent management and timely microbiological evaluation in patients with urolithiasis.

16 January 2026

Receiver Operating Characteristic (ROC): (A) ROC curves illustrate the discriminative performance of urine pH and stent indwelling duration for UTI presence in patients with urolithiasis; (B) Parameters included in the ROC curve analysis. *: p &lt; 0.05.

Antimicrobial resistance (AMR) is a global threat to human, animal and environmental health, underscoring the need for integrated surveillance to understand its dynamics and ecosystem interactions. This study investigated the potential of swifts (Apus spp.), long-distance migratory birds, as valuable bioindicators of environmental AMR dissemination. Four sampling sessions were conducted over two years (2023–2024) at a wildlife rehabilitation center in Trieste, Italy. Buccal and cloacal swabs were collected from 47 swifts: 10 sampled at arrival and 37 before autumn migration. Swabs were streaked on selective media for targeted isolation of Enterobacterales, Bacillales and Lactobacillales, yielding 168 bacterial isolates. Bacteria were identified using MALDI-TOF and antimicrobial susceptibility was assessed through disk diffusion method, using ECOFFs values or “no inhibition zone” criterion. Of the 168 bacterial isolates, 51 (30.36%) were non-wild type (NWT), with highest percentages of NWT isolates for clarithromycin (33.33%), erythromycin (31.50%), clindamycin (21.88%) and tetracycline (14.29%). Methicillin-resistant staphylococci (45.83%) and carbapenem NWT isolates (9.38%) were also detected. Bacillales isolates showed significantly higher NWT proportion (58.33%; p < 0.0001) compared to Enterobacterales and Lactobacillales. These findings, in clinically healthy non-antimicrobial treated swifts, suggest environmental exposure to resistant bacteria, and support a possible role of swifts as bioindicators of environmental AMR contamination, highlighting the need to strengthen environmental AMR surveillance within a One Health perspective.

16 January 2026

Percentage distribution of bacterial species isolated from all sampled swifts in the present study.

Evidence on the contribution of human papillomaviruses (HPVs) to the development of esophageal papillomas is still controversial. Esophageal papillomatosis (EP) is considered an exceedingly rare, but distinct entity within esophageal proliferations, with about 57 cases published so far. Tissues derived from an EP case and from non-EP esophageal papillomas were investigated for the presence of HPVs and virus-positive specimens were subsequently analyzed for transcriptional activity and surrogate markers of infection. Low-risk type HPV6 DNA was detected in a subset of the esophageal papillomatous tissues, including EP, and a variant isolate belonging to lineage A. In the EP tissue, the abundant expression of the viral E6/E7 mRNA and the presence of HPV6-specific E1^E4 transcripts, the latter indicative of productive viral infection, were detected. An analysis of HPV-specific neutralizing antibodies in sera obtained from the EP case during natural infection as well as after HPV vaccination revealed that, despite extensive manifestation, HPV6-specific antibodies were absent during natural infection and only elicited after repeated HPV immunizations. Although limited by a small sample size, this exploratory study suggests a possible involvement of HPV6 in the development of EP. Furthermore, this study may contribute to the evidence distinguishing EP from less extensive forms of non-EP esophageal squamous papillomas.

15 January 2026

Detection and identification of HPV in the esophageal tissues. (A) Broad-spectrum HPV PCRs with primer pairs CP4/CP5 and PPF1/CP5 were used for detection of HPVs in the esophageal tissues. Tissues were obtained from a patient with extensive papillomatosis (EP) and from two patients with multiple esophageal squamous papillomas (non-EP 1 and non-EP 2). Amplicons at the expected base pair sizes were observed in the EP patient and in the non-EP patient 1 ((left); CP4/CP5 at 450 base pairs) and in the EP patient ((right); PPF1/CP5 at 280 base pairs), but not in both non-EP patients. (B) To determine the individual HPV6 variant, a nested PCR using nHPV6L2 primers, recognizing a conserved part within L2, was performed. HPV6L2-specific bands at the expected size of 1073 base pairs were observed in the virus-positive tissues, including the sample derived from the EP patient. DNA isolated from an HPV6-positive anogenital wart (pos. control) and water (neg. control) served as the respective positive and no-template controls in the PCRs. (C) Sequencing of the HPV6L2 isolates derived from the esophageal tissues as compared to the HPV6b reference genome (GenBank accession number X00203) revealed a virus variant belonging to the HPV6 lineage A. The three single nucleotide polymorphisms detected in both virus-positive samples are annotated.

Ascaris lumbricoides is one of the most epidemiologically significant soil-transmitted helminths, and the environmental persistence of its eggs is largely attributed to their robust structural architecture. The search for ovicidal alternatives capable of overcoming this barrier has increasingly focused on metallic nanoparticles obtained through biological synthesis. Scanning electron microscopy (SEM) was employed to evaluate the ultrastructural effects of silver nanoparticles (AgNPs) biosynthesised by the nematophagous fungus Duddingtonia flagrans on A. lumbricoides eggs. Ultraviolet-visible spectroscopy and transmission electron microscopy confirmed the synthesis of AgNPs, revealing predominantly spherical, well-dispersed particles with an average diameter of 9.22 ± 4.9 nm. Cytotoxicity assays indicated an IC50 of 7.7 µg/mL. SEM analyses showed that eggs in the control group maintained intact morphology, with no apparent deformities. In contrast, exposure to AgNPs induced pronounced structural alterations, including marked wrinkling, surface erosion and shell collapse, suggesting disruption of multiple layers. Albendazole alone produced deep linear fissures consistent with internal metabolic failure, though with minimal external erosion. The combined treatment with AgNPs and albendazole resulted in severe degradation. These findings demonstrate that AgNPs exhibit significant ovicidal activity and may serve as effective adjuvants to enhance the action of conventional anthelmintics against highly resistant helminth eggs.

15 January 2026

UV-Vis absorption spectrum of: (A) AgNPs-Duddingtonia flagrans, (B) 1 mM silver nitrate solution, and (C) cell-free fungal filtrate. The images in the upper right corner (A) show the visual difference in the fungal filtrate + AgNO3 solution over the incubation period and the image of AgNPs-D. flagrans obtained by TEM.

News & Conferences

Issues

Open for Submission

Editor's Choice

Reprints of Collections

Chagas Disease
Reprint

Chagas Disease

Celebrating the 115th Anniversary of the Discovery of <em>Trypanosoma cruzi</em>
Editors: Michel Tibayrenc
Parasitic Diseases of Fish
Reprint

Parasitic Diseases of Fish

Identification, Host-Parasite Interactions and Molecular Biology
Editors: Gokhlesh Kumar, Arun Sudhagar, Kandasamy Saravanan

Get Alerted

Add your email address to receive forthcoming issues of this journal.

XFacebookLinkedIn
Pathogens - ISSN 2076-0817