An Ancient Terror, Yersinia pestis: What's New?

A special issue of Pathogens (ISSN 2076-0817). This special issue belongs to the section "Bacterial Pathogens".

Deadline for manuscript submissions: 30 June 2024 | Viewed by 1760

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Guest Editor
Global Health Department, Institut Pasteur, 75015 Paris, France
Interests: pathogen circulation in biotopes; Yersinia pestis; plague
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Special Issue Information

Dear Colleagues,

For centuries, plague has been regarded with biblical terror—"the black Death"—afflicting humans since the Neolithic Age. Much active focus remains on this area, even though the number of human cases is low. In our modern world where boats can rapidly and easily transport rodents and fleas, the dissemination of plague is still a concern. Moreover, climate change can also modify the global distribution of the three fundamental determinants of plague: fleas, rodents and Y. pestis. Yersinia pestis is a complex and interesting pathogen with an ecological life circle that sharply adapts to the vector, rodents, and the environment. The last ten years have brought new insight into the understanding of this pathogen; several phylogroups have been described, and genomes from ancient strains have been fully sequenced. Thus, the role of plasminogen activators in rodent invasion has come to be understood.

In the era of the COVID-19 pandemic, which has brought new insight into disease dissemination, it is time to identify what we know and what remains uncertain about plague. This Special Issue of Pathogens aims to highlight and address scientific knowledge in this area. Original research papers as well as reviews proposing overviews of this "Ancient terror" are welcome. 

Dr. Ronan Jambou
Guest Editor

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Keywords

  • Yersinia pestis
  • plague
  • Yersinia
  • rodent
  • genomes

Published Papers (1 paper)

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Research

14 pages, 3549 KiB  
Article
Genomic Analysis of Yersinia pestis Strains from Brazil: Search for Virulence Factors and Association with Epidemiological Data
by João Luiz de Lemos Padilha Pitta, Matheus Filgueira Bezerra, Diego Leandro Reis da Silva Fernandes, Tessa de Block, Ane de Souza Novaes, Alzira Maria Paiva de Almeida and Antonio Mauro Rezende
Pathogens 2023, 12(8), 991; https://doi.org/10.3390/pathogens12080991 - 28 Jul 2023
Viewed by 1425
Abstract
Yersinia pestis, the etiological agent of the plague, is considered a genetically homogeneous species. Brazil is currently in a period of epidemiological silence but plague antibodies are still detected in sentinel animals, suggesting disease activity in the sylvatic cycle. The present study [...] Read more.
Yersinia pestis, the etiological agent of the plague, is considered a genetically homogeneous species. Brazil is currently in a period of epidemiological silence but plague antibodies are still detected in sentinel animals, suggesting disease activity in the sylvatic cycle. The present study deployed an in silico approach to analyze virulence factors among 407 Brazilian genomes of Y. pestis belonging to the Fiocruz Collection (1966–1997). The pangenome analysis associated several known virulence factors of Y. pestis in clades according to the presence or absence of genes. Four main strain clades (C, E, G, and H) exhibited the absence of various virulence genes. Notably, clade G displayed the highest number of absent genes, while clade E showed a significant absence of genes related to the T6SS secretion system and clade H predominantly demonstrated the absence of plasmid-related genes. These results suggest attenuation of virulence in these strains over time. The cgMLST analysis associated genomic and epidemiological data highlighting evolutionary patterns related to the isolation years and outbreaks of Y. pestis in Brazil. Thus, the results contribute to the understanding of the genetic diversity and virulence within Y. pestis and the potential for utilizing genomic data in epidemiological investigations. Full article
(This article belongs to the Special Issue An Ancient Terror, Yersinia pestis: What's New?)
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