Section Editors

Section Board for 'Bioinformatics and Systems Biology' (32)

Please see the section webpage for more information on this section.

Prof. Dr. Lukasz Kurgan
Website
Section Editor-in-Chief
Computer Science, Virginia Commonwealth University, Richmond, VA 23284, USA
Interests: structural bioinformatics; intrinsically disordered proteins; protein function prediction; protein-ligand interactions; protein-nucleic acids interactions; structural genomics
Special Issues, Collections and Topics in MDPI journals
Dr. Pedro J. Ballester
Website
Cancer Research Center of Marseille, INSERM U1068, F-13009 Marseille, France
Interests: structure bioinformatics; cancer pharmaco-omics modelling; biomarker discovery; precision oncology; chemoinformatics; drug discovery informatics; virtual screening; machine learning
Special Issues, Collections and Topics in MDPI journals
Prof. Dr. Hiroyuki Matsumoto
Website
1. Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA
2. Clinical Proteomics and Gene Therapy Laboratory, Kurume University School of Medicine, Kurume, Fukuoka 830-0011, Japan
Interests: proteomics; mass spectrometry; protein phosphorylation; signal transduction; systems biology
Dr. Sarah Teichmann
Website
EMBL-European Bioinformatics Institute and Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
Interests: structural bioinformatics; protein complexes, assembly, biophysics; genomics; immunology
Prof. Dr. Philip E. Bourne
Website
Data Science Institute, University of Virginia, Charlottesville, VA 22904, USA
Interests: structural bioinformatics; molecular visualization; early stage drug discovery; drug off-target effects and polypharmacology; protein evolution; cell signaling
Dr. Alessandro Paiardini
Website
Department of Biochemical Sciences “A. Rossi Fanelli”, Sapienza University of Rome, P.le Aldo Moro 5, 00185 Rome, Italy
Interests: drug design; molecular docking and virtual screening; protein structure prediction and homology modeling; protein structure and evolution
Special Issues, Collections and Topics in MDPI journals
Dr. Khaled Barakat
Website
Faculty of Pharmacy and Pharmaceutical Sciences, University of Alberta, Edmonton, AB, Canada
Interests: computational drug discovery; molecular dynamics simulations; free energy calculations; molecular docking; systems biology; mathematical biology; immunotherapy; ion channel research
Prof. Dr. Alex Zelikovsky
Website
Department of Computer Science, Georgia State University, Atlanta, GA 30303, USA
Interests: algorithms; discrete optimization; bioinformatics; computational genomics; high-performance computing; analysis of viral and single-cell high-throughput sequencing data
Prof. Dr. Zhiliang Ji
Website
School of Life Sciences, Xiamen University, Xiamen 360000, China
Interests: bioinformatics; systems biology; systems drug toxicology; pharmacogenomics; drug design; CADD; -omics; biomedical big data; machine learning
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Dr. Ugo Bastolla
Website
Bioinformatics Unit, Centre for Molecular Biology Severo Ochoa (CSIC-UAM), Madrid, Spain
Interests: protein evolution; protein dynamics; protein folding; computational biology; theoretical ecology; chromatin structure
Dr. Paulus S. Wang
Website
Department of Physiology, School of Medicine, National Yang Ming Chiao Tung University, Taipei 112304, Taiwan
Interests: endocrinology; reproductive endocrinology; neuroendocrinology
Special Issues, Collections and Topics in MDPI journals
Dr. Gaetano T. Montelione
Website
Rensselaer Polytechnic Institute, Troy, NY, USA
Interests: structural bioinformatics; host - pathogen interactions; protein structure, dynamics, and function; biomolecular NMR spectroscopy; molecular biophysics; integral membrane proteins
Dr. Dmitry Korkin
Website
Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, MA 01609, USA
Interests: bioinformatics of complex disease; biomedical visualization; computational genomics
Prof. Dr. Mauro Fasano
Website
Director of the Bioinformatics Research Center, Dept. of Science and High Technology, University of Insubria, via Manara 7, I-21052 Busto Arsizio, Italy
Interests: systems biology; proteomics; mitochondria; neurodegeneration; Parkinson’s disease; biomarkers; multivariate analysis
Prof. Dongqing Wei
Website
Department of Bioinformatics and Biostatistics, College of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
Interests: bioinformatics; drug design; AI drug; protein dynamics; personal drug
Special Issues, Collections and Topics in MDPI journals
Dr. Alfredo Pulvirenti
Website
Department of Clinical and Experimental Medicine, University of Catania, 95123 Catania, Italy
Interests: biological network analysis; non-coding RNAs; precision oncology; systems biology; machine learning; big data
Special Issues, Collections and Topics in MDPI journals
Prof. Dr. Matteo Floris
Website
Department of Biomedical Science, University of Sassari, Sassari, Italy
Interests: medical genetics; bioinformatics; computational genomics
Special Issues, Collections and Topics in MDPI journals
Dr. Thomas R. Caulfield
Website
1. Department of Neuroscience, Department of Cancer Biology, Department of Health Sciences Research, Department of Neurosurgery, Mayo Clinic, Jacksonville, FL 32224, USA
2. Department of Clinical Genomics, Mayo Clinic, Rochester, MN 55902, USA
Interests: neurodegeneration drugs and mechanism; cancer mechanisms and drugs (general); brain lymphoma and GBM drugs; dual inhibitors to slow tumorogenesis; drug and technology development; machine learning and deep learning algorithms for drug design; advanced molecular modeling techniques for meso-to-exascale conformational sampling
Special Issues, Collections and Topics in MDPI journals
Prof. Dr. Gang Hu
Website
School of Statistics and Data Science, Nankai University, Tianjin 300071, China
Interests: structural bioinformatics; statistical genomics; transcriptomics; intrinsically disordered proteins; single cell omics
Special Issues, Collections and Topics in MDPI journals
Prof. Dr. Xiaobo Zhou

McGovern Medical School, and School of Biomedical Informatics, The University of Texas Health Science Center at Houston (UTHealth), Houston, TX 77030, USA
Interests: bioinformatics; systems biology; imaging informatics; clinical informatics
Prof. Dr. Jiangning Song
Website
Monash Biomedicine Discovery Institute and Monash Data Futures Institute, Monash University, Melbourne, VIC 3800, Australia
Interests: artificial intelligence; bioinformatics; computational biomedicine; data analytics; machine learning; medical imaging; pattern recognition
Dr. Mohit Kumar Jolly
Website
Centre for BioSystems Science and Engineering, Indian Institute of Science, Bangalore, India
Interests: metastasis; mathematical oncology; systems biology; computational biology; phenotypic plasticity; cellular decision-making; cancer stem cells; epithelial-mesenchymal transition
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Dr. Gian Gaetano Tartaglia
Website
Istituto Italiano di Tecnologia, Genova, Italy
Interests: computational modelling; phase-separation; solubility; ribonucleoprotein networks
Dr. Naglis Malys
Website
Bioprocess Research Centre, Faculty of Chemical Technology, Kaunas University of Technology, Radvilėnų pl. 19, LT-50254 Kaunas, Lithuania
Interests: systems biology; synthetic biology; yeast biology; microbial biotechnology; bacteriophage biology; metabolic engineering; metabolism; proteins; enzymes; metabolites; gene expression regulation; transcription factors; translation factors
Prof. Dr. Mire Zloh
Website
UCL School of Pharmacy, 29/39 Brunswick Square, London WC1N 1AX, UK
Interests: computer-aided molecular design; molecular dynamics; docking; in silico screening; structural chemistry; NMR spectroscopy; antimicrobial resistance; multidrug resistance; efflux pump inhibition; antimicrobial peptides; dendrimer design
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Dr. Dragos Horvath
Website
Laboratoire de Chemoinformatique, UMR 7140, Université de Strasbourg/CNRS, 1 rue B. Pascal, 67000 Strasbourg, France
Interests: chemoinformatics - methodology & applications; computer-aided drug design; flexible docking; nature-inspired computing
Special Issues, Collections and Topics in MDPI journals
Prof. Dr. Andrey P. Anisimov
Website
Laboratory for Plague Microbiology, Especially Dangerous Infections Department, State Research Center for Applied Microbiology and Biotechnology, 142279 Obolensk, Russia
Interests: molecular bacteriology; infectious diseases; molecular biology of host-vector-pathogen interactions; microbial pathogenesis; virulence factors; vaccinology; biotechnology
Special Issues, Collections and Topics in MDPI journals
Prof. Dr. Björn Wallner
Website
Division of Bioinformatics, Department of Physics, Chemistry and Biology, Linköping University, Linköping SE, Sweden
Interests: structural bioinformatics; protein structure prediction; protein docking; protein-protein interactions; protein-peptide interactions; disordered proteins; integrative modeling; machine learning; ligand binding
Prof. Dr. Jörg Gsponer
Website
Michael Smith Laboratories, Department of Biochemistry & Molecular Biology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
Interests: structural bioinformatics; molecular modeling; intrinsically disordered proteins; protein evolution; allostery; protein interactions; phase separation
Prof. Dr. Kyungsook Han
Website
Department of Computer Engineering, Inha University, Incheon, Korea
Interests: machine learning; protein-binding motif; protein-RNA interaction; protein-RNA interaction; cancer; gene correlation network; protein-protein interaction
Dr. Michael Hackenberg
Website
Computational Epigenomics Lab, Department of Genetics, Faculty of Science, University of Granada, 18071 Granada, Spain
Interests: computational genomics; bioinformatics; small RNA detection and prediction; miRNA targets; small RNAs at the interface between parasites and hosts; NGS data analysis; epigenomics; epitranscriptomics
Special Issues, Collections and Topics in MDPI journals
Dr. Michal Brylinski
Website
Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA
Interests: panomics data science; bioinformatics; cheminformatics; network biology; high-performance computing
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